Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38172 * 119.83114 * 2 1 4 4 C 1.38123 * 119.99515 * 179.97438 * 3 2 1 5 5 C 1.38648 * 119.87341 * 0.02562 * 4 3 2 6 6 O 1.35899 * 119.95088 * 180.02562 * 5 4 3 7 7 C 1.38943 * 120.09609 * 359.97438 * 5 4 3 8 8 C 1.38163 * 119.81922 * 0.02562 * 7 5 4 9 9 C 1.51374 * 109.75263 * 179.97438 * 8 7 5 10 10 H 1.09001 * 110.38374 * 258.21192 * 9 8 7 11 11 C 1.53001 * 110.30301 * 136.10894 * 9 8 7 12 12 C 1.54342 * 105.17336 * 17.18194 * 9 8 7 13 13 C 1.51362 * 130.39813 * 179.97438 * 7 5 4 14 14 H 1.08996 * 110.30608 * 281.74249 * 13 7 5 15 15 N 1.46897 * 110.30377 * 43.90084 * 13 7 5 16 16 C 1.46903 * 110.99597 * 203.96071 * 15 13 7 17 17 C 1.53002 * 109.46993 * 175.23049 * 16 15 13 18 18 C 1.50704 * 109.47139 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00070 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99727 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00273 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46771 * 59.99791 * 22 20 18 24 24 H 1.48493 * 109.47130 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46781 * 300.00235 * 22 20 18 26 26 H 1.08992 * 109.47063 * 96.70546 * 1 2 3 27 27 H 1.09003 * 109.47067 * 216.70549 * 1 2 3 28 28 H 1.09000 * 109.46993 * 336.70413 * 1 2 3 29 29 H 1.08003 * 120.00455 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.06266 * 180.02562 * 4 3 2 31 31 H 0.96699 * 113.99924 * 269.97552 * 6 5 4 32 32 H 1.08999 * 109.47195 * 319.99163 * 11 9 8 33 33 H 1.09000 * 109.47437 * 79.99673 * 11 9 8 34 34 H 1.09004 * 109.46814 * 199.98889 * 11 9 8 35 35 H 1.09004 * 110.82443 * 91.88901 * 12 9 8 36 36 H 1.09004 * 110.82571 * 215.43339 * 12 9 8 37 37 H 1.00897 * 111.00171 * 327.91399 * 15 13 7 38 38 H 1.08998 * 109.47484 * 295.23160 * 16 15 13 39 39 H 1.09005 * 109.47169 * 55.23539 * 16 15 13 40 40 H 1.09003 * 109.47090 * 299.99863 * 17 16 15 41 41 H 1.08999 * 109.47336 * 59.99855 * 17 16 15 42 42 H 0.96997 * 120.00044 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1986 0.0000 4 6 3.5756 1.2026 0.0005 5 6 4.2696 0.0023 0.0005 6 8 5.6286 0.0044 0.0016 7 6 3.5777 -1.2026 0.0005 8 6 2.1961 -1.2014 0.0000 9 6 1.6833 -2.6257 -0.0005 10 1 1.3587 -2.9120 -1.0009 11 6 0.5301 -2.7751 0.9938 12 6 2.8853 -3.4880 0.4398 13 6 4.0888 -2.6273 0.0000 14 1 4.4120 -2.9129 -1.0010 15 7 5.1957 -2.7721 0.9549 16 6 6.0575 -3.9056 0.5937 17 6 7.2608 -3.9524 1.5376 18 6 8.1453 -5.1149 1.1667 19 1 7.8759 -5.7564 0.3407 20 6 9.2984 -5.3593 1.8819 21 7 9.6262 -4.5785 2.8881 22 14 10.3944 -6.8007 1.4227 23 1 10.8672 -6.6371 0.0245 24 1 11.5623 -6.8460 2.3387 25 1 9.6244 -8.0651 1.5401 26 1 -0.3633 -0.1200 -1.0206 27 1 -0.3633 -0.8239 0.6143 28 1 -0.3633 0.9439 0.4064 29 1 1.6516 2.1324 -0.0004 30 1 4.1139 2.1389 0.0010 31 1 6.0226 0.0050 -0.8815 32 1 0.7518 -2.2047 1.8958 33 1 -0.3890 -2.4002 0.5435 34 1 0.4058 -3.8272 1.2506 35 1 2.8848 -3.6304 1.5205 36 1 2.8848 -4.4469 -0.0784 37 1 5.7297 -1.9187 1.0215 38 1 5.4923 -4.8336 0.6794 39 1 6.4051 -3.7853 -0.4324 40 1 7.8261 -3.0244 1.4518 41 1 6.9133 -4.0727 2.5636 42 1 10.4376 -4.7503 3.3910 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342410326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -54.236593 kcal Electronic energy + Delta-G solvation = -21258.349263 eV Core-core repulsion = 18201.523620 eV Total energy + Delta-G solvation = -3056.825644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71623 -38.62800 -37.82688 -36.06964 -34.78211 -33.30157 -31.35676 -30.55039 -28.77685 -27.37818 -26.12280 -24.43732 -23.06140 -22.43649 -21.72689 -20.86860 -18.90839 -18.51064 -17.05937 -16.87607 -16.60481 -16.39677 -16.25753 -15.59181 -15.07998 -14.99521 -14.74458 -14.33663 -14.21740 -14.01736 -13.59378 -13.33011 -13.21571 -12.99010 -12.88708 -12.85277 -12.57815 -12.45427 -12.29538 -12.13176 -11.98258 -11.63875 -11.49254 -11.40781 -11.22466 -11.19720 -10.57848 -9.74788 -9.31291 -9.15908 -8.20852 -6.33627 0.27323 0.34690 1.39207 1.43395 1.51392 2.39851 2.60640 3.11912 3.18493 3.45569 3.49973 3.55320 3.97727 4.05089 4.12620 4.22312 4.30263 4.45882 4.49441 4.54856 4.58622 4.67262 4.75757 4.82100 4.90193 4.96174 5.01312 5.05263 5.09649 5.12092 5.20267 5.38279 5.40461 5.43038 5.48459 5.52354 5.63533 5.68592 5.77591 5.96891 6.13629 6.28890 6.54002 6.79732 6.83270 7.35766 8.91380 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.003857 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.091244 B = 7257.464325 C = 7988.227739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 C -0.105 4.105 4 C -0.151 4.151 5 C 0.095 3.905 6 O -0.513 6.513 7 C -0.141 4.141 8 C -0.078 4.078 9 C -0.044 4.044 10 H 0.101 0.899 11 C -0.143 4.143 12 C -0.105 4.105 13 C 0.125 3.875 14 H 0.050 0.950 15 N -0.691 5.691 16 C 0.086 3.914 17 C 0.033 3.967 18 C -0.546 4.546 19 H 0.062 0.938 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.265 1.265 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.401 0.599 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.344 0.656 38 H 0.060 0.940 39 H 0.017 0.983 40 H -0.014 1.014 41 H -0.009 1.009 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.010 10.171 -9.704 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.123 4.123 4 C -0.169 4.169 5 C 0.050 3.950 6 O -0.325 6.325 7 C -0.142 4.142 8 C -0.078 4.078 9 C -0.063 4.063 10 H 0.119 0.881 11 C -0.200 4.200 12 C -0.144 4.144 13 C 0.016 3.984 14 H 0.068 0.932 15 N -0.325 5.325 16 C -0.042 4.042 17 C -0.005 4.005 18 C -0.584 4.584 19 H 0.081 0.919 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.208 1.208 25 H -0.190 1.190 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.258 0.742 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.164 0.836 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.005 0.995 41 H 0.009 0.991 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.307 9.837 -8.516 24.966 hybrid contribution 1.989 -0.156 -1.081 2.270 sum -19.318 9.682 -9.598 23.644 Atomic orbital electron populations 1.21146 0.88975 1.04419 1.03559 1.19788 0.97774 0.91030 0.99954 1.21187 0.93047 0.98561 0.99482 1.21500 0.95375 0.97166 1.02883 1.18399 0.82776 0.91837 1.01954 1.84809 1.16542 1.96299 1.34803 1.21078 0.95800 0.94112 1.03247 1.20535 0.92394 0.95876 0.99034 1.20666 0.95471 0.89051 1.01089 0.88093 1.21953 0.97445 1.02405 0.98194 1.22513 0.92085 0.97933 1.01828 1.21086 0.92579 0.91064 0.93713 0.93206 1.60769 1.13603 1.08391 1.49716 1.21822 0.93095 0.93263 0.96055 1.18913 0.92079 0.95221 0.94257 1.21563 1.07515 1.13371 1.15941 0.91941 1.26038 0.99440 0.99687 0.94702 1.70122 1.25733 1.40232 1.21188 0.85422 0.77732 0.79028 0.78367 1.18995 1.20759 1.18987 0.90106 0.89589 0.90379 0.82637 0.83929 0.74159 0.93430 0.89576 0.91558 0.91329 0.90066 0.83551 0.92195 0.96510 0.99537 0.99085 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.66 71.24 0.69 -0.91 16 2 C -0.09 -1.71 5.86 -19.82 -0.12 -1.82 16 3 C -0.10 -2.02 9.66 22.23 0.21 -1.81 16 4 C -0.15 -3.50 9.98 22.34 0.22 -3.27 16 5 C 0.09 2.72 6.58 22.54 0.15 2.87 16 6 O -0.51 -15.27 11.57 -92.42 -1.07 -16.34 16 7 C -0.14 -4.20 5.74 -19.50 -0.11 -4.31 16 8 C -0.08 -1.90 5.45 -19.60 -0.11 -2.00 16 9 C -0.04 -0.94 3.34 -10.87 -0.04 -0.98 16 10 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 11 C -0.14 -2.42 7.79 71.98 0.56 -1.86 16 12 C -0.11 -2.91 6.20 31.51 0.20 -2.71 16 13 C 0.12 4.06 3.16 44.84 0.14 4.20 16 14 H 0.05 1.62 7.76 -2.39 -0.02 1.60 16 15 N -0.69 -28.18 6.35 -491.96 -3.12 -31.31 16 16 C 0.09 3.94 5.54 86.30 0.48 4.42 16 17 C 0.03 1.86 5.18 29.85 0.15 2.02 16 18 C -0.55 -32.35 9.11 25.60 0.23 -32.12 16 19 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 21 N -0.93 -58.95 13.29 21.45 0.28 -58.67 16 22 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.03 4.31 -2.39 -0.01 1.02 16 28 H 0.08 0.77 8.03 -2.39 -0.02 0.75 16 29 H 0.16 1.98 8.05 -2.91 -0.02 1.96 16 30 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.40 8.51 9.06 -74.06 -0.67 7.84 16 32 H 0.05 0.93 7.98 -2.39 -0.02 0.91 16 33 H 0.09 1.03 6.09 -2.39 -0.01 1.01 16 34 H 0.07 1.06 8.07 -2.39 -0.02 1.04 16 35 H 0.07 2.15 7.86 -2.39 -0.02 2.13 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.34 14.73 6.26 -89.70 -0.56 14.17 16 38 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 39 H 0.02 0.74 7.96 -2.38 -0.02 0.73 16 40 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 41 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -72.19 335.19 1.04 -71.15 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.21 Total: 25.75 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.13 Total: -37.87 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -2.84 Total: -89.97 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.07 Total: -16.34 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.19 1.04 -71.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds