Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38177 * 119.83547 * 2 1 4 4 C 1.38115 * 119.99888 * 179.97438 * 3 2 1 5 5 C 1.38644 * 119.87106 * 0.26463 * 4 3 2 6 6 O 1.35902 * 119.95132 * 179.74761 * 5 4 3 7 7 C 1.38939 * 120.10091 * 359.50795 * 5 4 3 8 8 C 1.38172 * 119.81439 * 0.48468 * 7 5 4 9 9 C 1.51381 * 109.75406 * 179.72504 * 8 7 5 10 10 H 1.08998 * 110.30356 * 136.21031 * 9 8 7 11 11 C 1.52994 * 110.30400 * 258.27093 * 9 8 7 12 12 C 1.54349 * 105.17082 * 17.19430 * 9 8 7 13 13 C 1.51358 * 130.40744 * 180.15713 * 7 5 4 14 14 H 1.08998 * 110.30976 * 44.19963 * 13 7 5 15 15 N 1.46906 * 110.38591 * 282.09010 * 13 7 5 16 16 C 1.46900 * 110.99982 * 89.20729 * 15 13 7 17 17 C 1.52995 * 109.47056 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47519 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99277 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00423 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99859 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47506 * 359.97438 * 22 20 18 24 24 H 1.48510 * 109.47068 * 120.00120 * 22 20 18 25 25 H 1.48499 * 109.47149 * 239.99600 * 22 20 18 26 26 H 1.08993 * 109.47738 * 89.99722 * 1 2 3 27 27 H 1.09000 * 109.46900 * 209.99588 * 1 2 3 28 28 H 1.09002 * 109.46857 * 329.99105 * 1 2 3 29 29 H 1.08007 * 119.99513 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.06060 * 179.97438 * 4 3 2 31 31 H 0.96698 * 114.00390 * 89.99008 * 6 5 4 32 32 H 1.08998 * 109.47710 * 58.54212 * 11 9 8 33 33 H 1.09008 * 109.47142 * 178.54602 * 11 9 8 34 34 H 1.08999 * 109.47551 * 298.54218 * 11 9 8 35 35 H 1.08997 * 110.82578 * 91.87885 * 12 9 8 36 36 H 1.09002 * 110.82317 * 215.43500 * 12 9 8 37 37 H 1.00898 * 110.99739 * 325.25672 * 15 13 7 38 38 H 1.08999 * 109.46828 * 300.00131 * 16 15 13 39 39 H 1.08995 * 109.46954 * 60.00264 * 16 15 13 40 40 H 1.09004 * 109.46933 * 300.00321 * 17 16 15 41 41 H 1.09008 * 109.47362 * 59.99527 * 17 16 15 42 42 H 0.96999 * 120.00034 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 0.0005 5 6 4.2695 0.0023 -0.0045 6 8 5.6285 0.0043 -0.0092 7 6 3.5777 -1.2026 0.0003 8 6 2.1959 -1.2014 -0.0001 9 6 1.6831 -2.6257 -0.0012 10 1 0.8605 -2.7321 0.7059 11 6 1.2292 -3.0254 -1.4065 12 6 2.8851 -3.4882 0.4389 13 6 4.0886 -2.6273 -0.0003 14 1 4.9095 -2.7352 0.7087 15 7 4.5265 -3.0134 -1.3484 16 6 5.9423 -2.6815 -1.5572 17 6 6.3605 -3.0968 -2.9690 18 6 7.8130 -2.7570 -3.1832 19 1 8.3809 -2.2909 -2.3914 20 6 8.4167 -3.0400 -4.3900 21 7 7.7250 -3.6071 -5.3542 22 14 10.2173 -2.6193 -4.6550 23 1 10.7656 -1.9934 -3.4251 24 1 10.9755 -3.8592 -4.9603 25 1 10.3420 -1.6706 -5.7905 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6516 2.1324 -0.0004 30 1 4.1139 2.1389 0.0001 31 1 6.0249 0.0031 0.8728 32 1 2.0638 -2.9249 -2.1004 33 1 0.8871 -4.0604 -1.3973 34 1 0.4132 -2.3760 -1.7233 35 1 2.8846 -3.6309 1.5195 36 1 2.8846 -4.4469 -0.0797 37 1 3.9467 -2.5840 -2.0537 38 1 6.0851 -1.6076 -1.4374 39 1 6.5516 -3.2129 -0.8263 40 1 6.2175 -4.1707 -3.0892 41 1 5.7510 -2.5651 -3.6998 42 1 8.1498 -3.8065 -6.2031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342410328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = -36.251705 kcal Electronic energy + Delta-G solvation = -21644.004621 eV Core-core repulsion = 18587.958860 eV Total energy + Delta-G solvation = -3056.045760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74398 -37.56955 -36.53768 -34.41656 -32.75300 -31.83728 -30.05733 -29.16182 -27.54453 -26.27215 -24.51634 -23.39144 -21.86807 -20.74047 -20.49001 -19.67457 -17.79871 -16.30198 -16.24408 -15.54216 -15.24926 -14.82589 -14.51749 -14.24606 -13.98615 -13.57430 -13.40318 -12.97281 -12.81299 -12.67954 -12.50873 -12.24693 -11.98723 -11.86950 -11.60097 -11.27019 -11.16831 -10.97414 -10.90089 -10.81708 -10.51433 -10.37995 -10.23345 -9.86037 -9.25666 -9.07005 -8.68308 -8.34279 -8.27383 -7.66277 -5.92148 -3.93487 1.26457 1.33478 3.35992 3.42880 3.47618 3.58386 4.31143 4.40460 4.50704 4.56110 4.86547 4.91102 5.05353 5.06351 5.18637 5.27789 5.42559 5.44008 5.50425 5.54972 5.60335 5.71161 5.73963 5.90824 5.98229 6.02354 6.13645 6.16888 6.24195 6.34225 6.37413 6.50976 6.52468 6.65428 6.75536 6.89116 7.16486 7.57250 7.81199 7.83134 7.91599 8.04735 8.17748 8.53948 9.13962 9.69583 11.19613 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.004551 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.137081 B = 6151.478745 C = 6731.041030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.107 4.107 4 C -0.148 4.148 5 C 0.122 3.878 6 O -0.486 6.486 7 C -0.146 4.146 8 C -0.069 4.069 9 C -0.051 4.051 10 H 0.076 0.924 11 C -0.140 4.140 12 C -0.110 4.110 13 C 0.131 3.869 14 H 0.079 0.921 15 N -0.670 5.670 16 C 0.057 3.943 17 C 0.026 3.974 18 C -0.514 4.514 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.383 0.617 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.335 0.665 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.010 0.990 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.171 6.595 14.412 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.166 4.166 5 C 0.077 3.923 6 O -0.296 6.296 7 C -0.148 4.148 8 C -0.070 4.070 9 C -0.069 4.069 10 H 0.094 0.906 11 C -0.197 4.197 12 C -0.148 4.148 13 C 0.020 3.980 14 H 0.097 0.903 15 N -0.299 5.299 16 C -0.071 4.071 17 C -0.011 4.011 18 C -0.553 4.553 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.238 0.762 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.154 0.846 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.060 5.844 13.780 21.233 hybrid contribution 1.155 1.421 0.089 1.833 sum -13.906 7.265 13.868 20.940 Atomic orbital electron populations 1.20735 0.91414 1.02368 1.02186 1.19419 0.95878 0.91839 1.01752 1.20753 0.93502 0.97240 1.01010 1.21288 0.94516 0.97511 1.03293 1.18139 0.83119 0.91055 0.99992 1.84993 1.15595 1.96298 1.32714 1.21803 0.94860 0.96567 1.01579 1.20349 0.93317 0.94496 0.98826 1.20637 0.98114 0.89988 0.98150 0.90582 1.21802 1.01481 1.00930 0.95505 1.22470 0.92843 0.99182 1.00307 1.20984 0.96838 0.86535 0.93625 0.90308 1.61009 1.05819 1.61806 1.01311 1.22329 0.85251 0.98823 1.00718 1.19054 0.95574 0.97152 0.89359 1.21217 0.95850 1.39413 0.98812 0.92717 1.24998 0.97934 0.95369 0.96155 1.69990 1.36083 1.42946 1.04483 0.86550 0.85450 0.78002 0.78075 1.19775 1.21052 1.21114 0.91314 0.91634 0.91916 0.85816 0.85511 0.76176 0.91549 0.92058 0.92983 0.91281 0.89047 0.84589 0.94114 0.92846 0.95986 0.97127 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.86 36.00 0.36 -0.62 16 2 C -0.09 -1.05 5.88 -104.55 -0.62 -1.66 16 3 C -0.11 -1.24 9.68 -39.65 -0.38 -1.63 16 4 C -0.15 -1.92 9.98 -39.48 -0.39 -2.32 16 5 C 0.12 1.82 6.68 -39.17 -0.26 1.56 16 6 O -0.49 -7.42 11.34 -19.43 -0.22 -7.64 16 7 C -0.15 -2.16 5.43 -104.06 -0.56 -2.72 16 8 C -0.07 -0.90 5.31 -104.22 -0.55 -1.45 16 9 C -0.05 -0.58 2.97 -90.73 -0.27 -0.85 16 10 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 11 C -0.14 -1.62 9.14 37.15 0.34 -1.28 16 12 C -0.11 -1.37 6.30 -25.32 -0.16 -1.53 16 13 C 0.13 2.00 3.12 -67.83 -0.21 1.78 16 14 H 0.08 1.22 7.82 -51.93 -0.41 0.81 16 15 N -0.67 -12.53 6.18 -106.86 -0.66 -13.19 16 16 C 0.06 1.26 5.46 -3.83 -0.02 1.24 16 17 C 0.03 0.71 5.23 -27.88 -0.15 0.57 16 18 C -0.51 -15.17 9.11 -34.44 -0.31 -15.48 16 19 H 0.05 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 22 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.53 7.28 -51.93 -0.38 0.15 16 28 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.38 3.96 9.06 45.56 0.41 4.37 16 32 H 0.07 0.92 6.23 -51.93 -0.32 0.60 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 37 H 0.34 6.46 6.68 -39.29 -0.26 6.20 16 38 H 0.04 0.93 5.88 -51.93 -0.31 0.63 16 39 H 0.05 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -32.97 336.87 -9.21 -42.18 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.83 Total: 6.14 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.30 Total: -22.83 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.08 Total: -40.26 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.22 Total: -7.64 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.97 -9.21 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.927 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds