Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38177 * 119.83547 * 2 1 4 4 C 1.38115 * 119.99888 * 179.97438 * 3 2 1 5 5 C 1.38644 * 119.87106 * 0.26463 * 4 3 2 6 6 O 1.35902 * 119.95132 * 179.74761 * 5 4 3 7 7 C 1.38939 * 120.10091 * 359.50795 * 5 4 3 8 8 C 1.38172 * 119.81439 * 0.48468 * 7 5 4 9 9 C 1.51381 * 109.75406 * 179.72504 * 8 7 5 10 10 H 1.08998 * 110.30356 * 136.21031 * 9 8 7 11 11 C 1.52994 * 110.30400 * 258.27093 * 9 8 7 12 12 C 1.54349 * 105.17082 * 17.19430 * 9 8 7 13 13 C 1.51358 * 130.40744 * 180.15713 * 7 5 4 14 14 H 1.08998 * 110.30976 * 44.19963 * 13 7 5 15 15 N 1.46906 * 110.38591 * 282.09010 * 13 7 5 16 16 C 1.46900 * 110.99982 * 89.20729 * 15 13 7 17 17 C 1.52995 * 109.47056 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47519 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99277 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00423 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99859 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47506 * 359.97438 * 22 20 18 24 24 H 1.48510 * 109.47068 * 120.00120 * 22 20 18 25 25 H 1.48499 * 109.47149 * 239.99600 * 22 20 18 26 26 H 1.08993 * 109.47738 * 89.99722 * 1 2 3 27 27 H 1.09000 * 109.46900 * 209.99588 * 1 2 3 28 28 H 1.09002 * 109.46857 * 329.99105 * 1 2 3 29 29 H 1.08007 * 119.99513 * 359.97438 * 3 2 1 30 30 H 1.08002 * 120.06060 * 179.97438 * 4 3 2 31 31 H 0.96698 * 114.00390 * 89.99008 * 6 5 4 32 32 H 1.08998 * 109.47710 * 58.54212 * 11 9 8 33 33 H 1.09008 * 109.47142 * 178.54602 * 11 9 8 34 34 H 1.08999 * 109.47551 * 298.54218 * 11 9 8 35 35 H 1.08997 * 110.82578 * 91.87885 * 12 9 8 36 36 H 1.09002 * 110.82317 * 215.43500 * 12 9 8 37 37 H 1.00898 * 110.99739 * 325.25672 * 15 13 7 38 38 H 1.08999 * 109.46828 * 300.00131 * 16 15 13 39 39 H 1.08995 * 109.46954 * 60.00264 * 16 15 13 40 40 H 1.09004 * 109.46933 * 300.00321 * 17 16 15 41 41 H 1.09008 * 109.47362 * 59.99527 * 17 16 15 42 42 H 0.96999 * 120.00034 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 0.0005 5 6 4.2695 0.0023 -0.0045 6 8 5.6285 0.0043 -0.0092 7 6 3.5777 -1.2026 0.0003 8 6 2.1959 -1.2014 -0.0001 9 6 1.6831 -2.6257 -0.0012 10 1 0.8605 -2.7321 0.7059 11 6 1.2292 -3.0254 -1.4065 12 6 2.8851 -3.4882 0.4389 13 6 4.0886 -2.6273 -0.0003 14 1 4.9095 -2.7352 0.7087 15 7 4.5265 -3.0134 -1.3484 16 6 5.9423 -2.6815 -1.5572 17 6 6.3605 -3.0968 -2.9690 18 6 7.8130 -2.7570 -3.1832 19 1 8.3809 -2.2909 -2.3914 20 6 8.4167 -3.0400 -4.3900 21 7 7.7250 -3.6071 -5.3542 22 14 10.2173 -2.6193 -4.6550 23 1 10.7656 -1.9934 -3.4251 24 1 10.9755 -3.8592 -4.9603 25 1 10.3420 -1.6706 -5.7905 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6516 2.1324 -0.0004 30 1 4.1139 2.1389 0.0001 31 1 6.0249 0.0031 0.8728 32 1 2.0638 -2.9249 -2.1004 33 1 0.8871 -4.0604 -1.3973 34 1 0.4132 -2.3760 -1.7233 35 1 2.8846 -3.6309 1.5195 36 1 2.8846 -4.4469 -0.0797 37 1 3.9467 -2.5840 -2.0537 38 1 6.0851 -1.6076 -1.4374 39 1 6.5516 -3.2129 -0.8263 40 1 6.2175 -4.1707 -3.0892 41 1 5.7510 -2.5651 -3.6998 42 1 8.1498 -3.8065 -6.2031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342410328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -58.059119 kcal Electronic energy + Delta-G solvation = -21644.950261 eV Core-core repulsion = 18587.958860 eV Total energy + Delta-G solvation = -3056.991401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.77208 -38.66650 -37.72709 -36.02975 -34.60928 -32.99913 -31.31958 -30.56090 -28.89100 -27.17338 -26.18610 -24.80752 -22.86665 -22.51930 -21.69165 -20.78984 -18.89814 -18.53008 -17.26991 -16.80019 -16.47816 -16.44629 -15.94438 -15.52218 -14.96582 -14.82296 -14.65627 -14.34412 -14.26342 -13.79229 -13.62182 -13.43684 -13.31956 -13.09129 -12.89981 -12.71133 -12.55851 -12.44428 -12.24548 -12.19944 -11.98645 -11.68427 -11.52105 -11.36823 -11.26778 -11.09656 -10.58106 -9.79908 -9.33144 -9.12218 -8.21107 -6.32389 0.27847 0.34493 1.37958 1.39101 1.52711 2.39606 2.61455 3.11883 3.27323 3.39729 3.44053 3.67712 4.01113 4.09596 4.14568 4.19855 4.40428 4.49236 4.51465 4.62520 4.65287 4.74147 4.81274 4.88859 4.90377 5.01044 5.07570 5.11391 5.13131 5.14615 5.22918 5.31643 5.39681 5.44398 5.47778 5.53297 5.68117 5.70184 5.78187 5.97435 6.14007 6.30073 6.49013 6.84065 6.85403 7.36498 8.91626 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.004551 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.137081 B = 6151.478745 C = 6731.041030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.092 4.092 3 C -0.104 4.104 4 C -0.158 4.158 5 C 0.098 3.902 6 O -0.510 6.510 7 C -0.170 4.170 8 C -0.074 4.074 9 C -0.044 4.044 10 H 0.104 0.896 11 C -0.138 4.138 12 C -0.104 4.104 13 C 0.128 3.872 14 H 0.071 0.929 15 N -0.671 5.671 16 C 0.079 3.921 17 C 0.035 3.965 18 C -0.540 4.540 19 H 0.057 0.943 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.277 1.277 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.398 0.602 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.331 0.669 38 H 0.034 0.966 39 H 0.052 0.948 40 H -0.007 1.007 41 H -0.019 1.019 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.236 7.553 15.637 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.176 4.176 5 C 0.053 3.947 6 O -0.322 6.322 7 C -0.172 4.172 8 C -0.074 4.074 9 C -0.063 4.063 10 H 0.122 0.878 11 C -0.196 4.196 12 C -0.142 4.142 13 C 0.018 3.982 14 H 0.090 0.910 15 N -0.300 5.300 16 C -0.049 4.049 17 C -0.002 4.002 18 C -0.578 4.578 19 H 0.076 0.924 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.203 1.203 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.171 0.829 30 H 0.156 0.844 31 H 0.256 0.744 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.012 0.988 41 H 0.000 1.000 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.138 6.803 15.037 23.083 hybrid contribution 1.422 1.150 -0.276 1.849 sum -14.717 7.953 14.762 22.310 Atomic orbital electron populations 1.20797 0.88942 1.03869 1.02908 1.19821 0.97708 0.91268 1.00392 1.21151 0.93029 0.98597 0.99449 1.21503 0.95438 0.97283 1.03390 1.18460 0.82982 0.91998 1.01226 1.84923 1.16380 1.96411 1.34482 1.21789 0.95952 0.95921 1.03542 1.20609 0.92643 0.95767 0.98427 1.20645 0.98312 0.88757 0.98543 0.87842 1.21788 1.00717 1.02075 0.94978 1.22461 0.91826 0.98410 1.01506 1.21072 0.97867 0.88185 0.91107 0.91044 1.60944 1.03654 1.62149 1.03265 1.21885 0.87655 0.98105 0.97301 1.18893 0.94797 0.94791 0.91753 1.21599 0.96921 1.39923 0.99400 0.92430 1.25990 1.03291 0.94843 0.95646 1.70123 1.38440 1.43661 1.05095 0.85355 0.78904 0.78127 0.78380 1.18647 1.19999 1.20306 0.90814 0.90608 0.90064 0.82913 0.84437 0.74381 0.94523 0.90871 0.91707 0.89098 0.89683 0.85118 0.94735 0.92947 0.98846 1.00050 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.86 71.23 0.70 -0.83 16 2 C -0.09 -1.94 5.88 -19.82 -0.12 -2.06 16 3 C -0.10 -2.20 9.68 22.23 0.22 -1.98 16 4 C -0.16 -3.98 9.98 22.34 0.22 -3.76 16 5 C 0.10 2.95 6.68 22.53 0.15 3.10 16 6 O -0.51 -16.03 11.34 -92.44 -1.05 -17.08 16 7 C -0.17 -5.01 5.43 -19.50 -0.11 -5.12 16 8 C -0.07 -1.81 5.31 -19.60 -0.10 -1.92 16 9 C -0.04 -0.93 2.97 -10.87 -0.03 -0.97 16 10 H 0.10 1.65 7.61 -2.39 -0.02 1.63 16 11 C -0.14 -3.03 9.14 71.98 0.66 -2.37 16 12 C -0.10 -2.47 6.30 31.51 0.20 -2.27 16 13 C 0.13 3.93 3.12 44.84 0.14 4.07 16 14 H 0.07 2.25 7.82 -2.39 -0.02 2.23 16 15 N -0.67 -26.09 6.18 -491.98 -3.04 -29.13 16 16 C 0.08 3.68 5.46 86.30 0.47 4.15 16 17 C 0.04 2.02 5.23 29.85 0.16 2.18 16 18 C -0.54 -32.73 9.11 25.60 0.23 -32.49 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 21 N -0.93 -59.23 13.29 21.45 0.28 -58.95 16 22 Si 0.97 46.15 29.54 68.60 2.03 48.18 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 0.93 7.28 -2.39 -0.02 0.91 16 28 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.40 8.61 9.06 -74.06 -0.67 7.94 16 32 H 0.04 1.02 6.23 -2.39 -0.01 1.00 16 33 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.13 7.84 -2.39 -0.02 2.12 16 37 H 0.33 13.40 6.68 -89.70 -0.60 12.80 16 38 H 0.03 1.65 5.88 -2.39 -0.01 1.63 16 39 H 0.05 2.41 8.07 -2.39 -0.02 2.39 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 42 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -72.68 336.87 1.23 -71.45 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.25 Total: 25.32 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.25 Total: -39.79 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -2.75 Total: -88.08 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -1.05 Total: -17.08 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.68 1.23 -71.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.393 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds