Wall clock time and date at job start Mon Mar 30 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38179 * 119.83386 * 2 1 4 4 C 1.38119 * 119.99413 * 179.97438 * 3 2 1 5 5 C 1.38642 * 119.87685 * 359.97438 * 4 3 2 6 6 O 1.35903 * 119.95437 * 179.97438 * 5 4 3 7 7 C 1.38942 * 120.09829 * 0.02562 * 5 4 3 8 8 C 1.38173 * 119.81751 * 359.97438 * 7 5 4 9 9 C 1.51374 * 109.75328 * 179.97438 * 8 7 5 10 10 H 1.09006 * 110.29875 * 136.21324 * 9 8 7 11 11 C 1.52995 * 110.30699 * 258.26514 * 9 8 7 12 12 C 1.54492 * 105.22017 * 17.12642 * 9 8 7 13 13 C 1.51357 * 130.40710 * 179.97438 * 7 5 4 14 14 H 1.09007 * 110.30291 * 281.86998 * 13 7 5 15 15 N 1.46905 * 110.30789 * 43.92355 * 13 7 5 16 16 C 1.46899 * 111.00317 * 205.18032 * 15 13 7 17 17 C 1.52999 * 109.47227 * 174.84791 * 16 15 13 18 18 C 1.50697 * 109.46852 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00629 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99650 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00082 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47098 * 60.00190 * 22 20 18 24 24 H 1.48500 * 109.46755 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.46985 * 299.99623 * 22 20 18 26 26 H 1.09005 * 109.47057 * 90.00220 * 1 2 3 27 27 H 1.08997 * 109.47487 * 210.00237 * 1 2 3 28 28 H 1.08996 * 109.47381 * 330.00238 * 1 2 3 29 29 H 1.07994 * 119.99924 * 359.95624 * 3 2 1 30 30 H 1.08005 * 120.05923 * 179.97438 * 4 3 2 31 31 H 0.96700 * 114.00160 * 270.02632 * 6 5 4 32 32 H 1.09005 * 109.46852 * 58.54659 * 11 9 8 33 33 H 1.08994 * 109.47505 * 178.54941 * 11 9 8 34 34 H 1.09003 * 109.46963 * 298.55171 * 11 9 8 35 35 H 1.09000 * 110.90840 * 215.55121 * 12 9 8 36 36 H 1.09003 * 110.80397 * 91.94998 * 12 9 8 37 37 H 1.00894 * 110.99912 * 81.22601 * 15 13 7 38 38 H 1.09003 * 109.46854 * 294.84796 * 16 15 13 39 39 H 1.08995 * 109.47289 * 54.84008 * 16 15 13 40 40 H 1.08999 * 109.46850 * 299.99441 * 17 16 15 41 41 H 1.08998 * 109.46978 * 60.00081 * 17 16 15 42 42 H 0.96996 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1987 0.0000 4 6 3.5756 1.2025 0.0005 5 6 4.2695 0.0023 0.0016 6 8 5.6286 0.0043 0.0016 7 6 3.5777 -1.2026 0.0016 8 6 2.1960 -1.2015 0.0011 9 6 1.6832 -2.6257 0.0006 10 1 0.8604 -2.7317 0.7077 11 6 1.2293 -3.0261 -1.4046 12 6 2.8860 -3.4900 0.4398 13 6 4.0886 -2.6273 0.0021 14 1 4.4146 -2.9126 -0.9982 15 7 5.1944 -2.7721 0.9583 16 6 6.0729 -3.8878 0.5824 17 6 7.2786 -3.9272 1.5235 18 6 8.1794 -5.0722 1.1382 19 1 7.9180 -5.7085 0.3056 20 6 9.3369 -5.3081 1.8493 21 7 9.6550 -4.5335 2.8634 22 14 10.4532 -6.7278 1.3721 23 1 10.9219 -6.5412 -0.0246 24 1 11.6234 -6.7659 2.2855 25 1 9.7020 -8.0045 1.4758 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6517 2.1323 -0.0007 30 1 4.1139 2.1388 0.0001 31 1 6.0219 0.0044 -0.8818 32 1 2.0640 -2.9259 -2.0984 33 1 0.8872 -4.0609 -1.3949 34 1 0.4133 -2.3767 -1.7217 35 1 2.8868 -4.4483 -0.0797 36 1 2.8854 -3.6338 1.5203 37 1 4.8468 -2.8866 1.8985 38 1 5.5221 -4.8254 0.6582 39 1 6.4165 -3.7503 -0.4428 40 1 7.8294 -2.9896 1.4477 41 1 6.9349 -4.0648 2.5487 42 1 10.4695 -4.6993 3.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342410331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:52 Heat of formation + Delta-G solvation = -35.082144 kcal Electronic energy + Delta-G solvation = -21253.209452 eV Core-core repulsion = 18197.214408 eV Total energy + Delta-G solvation = -3055.995045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62480 -37.46962 -36.47795 -34.58104 -32.83195 -31.84462 -30.16267 -29.19685 -27.21584 -26.22640 -24.71130 -23.42744 -21.97462 -20.77963 -20.40307 -19.72530 -17.63809 -16.38608 -16.08220 -15.36030 -15.24434 -14.77462 -14.56401 -14.27421 -13.77218 -13.74785 -13.57908 -13.31029 -12.81094 -12.73939 -12.34802 -12.17137 -12.11875 -11.89754 -11.66262 -11.35209 -11.18088 -11.04364 -10.92745 -10.87292 -10.70708 -10.51080 -10.14967 -9.91668 -9.32099 -9.09817 -8.54891 -8.29908 -8.21990 -7.64148 -5.94369 -3.97105 1.33730 1.38391 3.35791 3.40203 3.42306 3.63283 4.36267 4.45565 4.49228 4.56679 4.83760 4.88240 4.97234 5.06586 5.19763 5.22604 5.37676 5.41051 5.41623 5.46199 5.55582 5.58657 5.71070 5.79279 5.85759 5.92837 6.00381 6.04184 6.20650 6.23767 6.34546 6.42660 6.46051 6.58185 6.69806 6.92974 7.05508 7.58121 7.80688 7.89512 8.03106 8.05383 8.18065 8.49489 9.10603 9.66123 11.16926 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027765 B = 0.003876 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.212572 B = 7222.818340 C = 7925.167171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.153 4.153 5 C 0.139 3.861 6 O -0.476 6.476 7 C -0.100 4.100 8 C -0.079 4.079 9 C -0.048 4.048 10 H 0.077 0.923 11 C -0.138 4.138 12 C -0.147 4.147 13 C 0.131 3.869 14 H 0.085 0.915 15 N -0.670 5.670 16 C 0.069 3.931 17 C 0.028 3.972 18 C -0.522 4.522 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.278 1.278 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.383 0.617 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.337 0.663 38 H 0.013 0.987 39 H 0.055 0.945 40 H 0.026 0.974 41 H 0.012 0.988 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 9.037 -8.353 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.172 4.172 5 C 0.094 3.906 6 O -0.285 6.285 7 C -0.101 4.101 8 C -0.080 4.080 9 C -0.067 4.067 10 H 0.095 0.905 11 C -0.195 4.195 12 C -0.186 4.186 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.300 5.300 16 C -0.059 4.059 17 C -0.010 4.010 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.238 0.762 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.031 0.969 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.899 9.523 -7.902 22.590 hybrid contribution 0.282 -1.441 -0.410 1.525 sum -18.617 8.082 -8.313 21.932 Atomic orbital electron populations 1.20720 0.91587 1.02435 1.01883 1.19339 0.95696 0.91781 1.02348 1.20716 0.93554 0.97086 1.01311 1.21335 0.94454 0.97640 1.03736 1.18085 0.83525 0.90504 0.98499 1.84950 1.14984 1.96242 1.32323 1.20962 0.93517 0.95152 1.00509 1.20264 0.93523 0.94183 1.00028 1.20567 0.97958 0.90411 0.97761 0.90456 1.21751 1.01212 1.00993 0.95586 1.23195 0.94971 0.98762 1.01663 1.20944 0.90115 0.89271 0.97646 0.89671 1.60521 1.18022 1.47030 1.04382 1.22169 0.94565 0.88697 1.00475 1.19026 0.90953 0.97302 0.93693 1.21155 1.06294 1.13622 1.15010 0.92938 1.25001 0.97804 0.96445 0.95084 1.69971 1.25000 1.38361 1.19826 0.86671 0.80199 0.82840 0.78337 1.20268 1.21297 1.20342 0.91587 0.91742 0.91885 0.85965 0.85574 0.76193 0.92447 0.92246 0.92579 0.90456 0.90737 0.84503 0.96903 0.92640 0.95510 0.96950 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.86 36.00 0.36 -0.57 16 2 C -0.09 -1.04 5.88 -104.55 -0.62 -1.66 16 3 C -0.11 -1.21 9.68 -39.65 -0.38 -1.60 16 4 C -0.15 -1.93 9.98 -39.48 -0.39 -2.33 16 5 C 0.14 2.06 6.69 -39.17 -0.26 1.80 16 6 O -0.48 -7.52 13.06 -19.43 -0.25 -7.77 16 7 C -0.10 -1.47 5.78 -104.06 -0.60 -2.07 16 8 C -0.08 -1.01 5.31 -104.22 -0.55 -1.56 16 9 C -0.05 -0.53 2.97 -90.66 -0.27 -0.80 16 10 H 0.08 0.78 7.61 -51.93 -0.40 0.39 16 11 C -0.14 -1.30 9.14 37.15 0.34 -0.96 16 12 C -0.15 -1.88 6.24 -25.25 -0.16 -2.03 16 13 C 0.13 1.99 3.12 -67.84 -0.21 1.77 16 14 H 0.09 1.30 7.73 -51.93 -0.40 0.90 16 15 N -0.67 -12.46 5.88 -106.86 -0.63 -13.09 16 16 C 0.07 1.47 5.52 -3.83 -0.02 1.45 16 17 C 0.03 0.74 5.28 -27.89 -0.15 0.59 16 18 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 22 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.52 7.28 -51.93 -0.38 0.14 16 28 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.38 4.44 9.06 45.56 0.41 4.86 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 36 H 0.07 0.98 7.61 -51.93 -0.39 0.59 16 37 H 0.34 6.28 8.17 -39.29 -0.32 5.96 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -32.47 343.68 -9.39 -41.86 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.07 Total: 5.34 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.33 Total: -21.72 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.11 Total: -39.81 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.25 Total: -7.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.47 -9.39 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.775 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds