Wall clock time and date at job start Mon Mar 30 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38179 * 119.83386 * 2 1 4 4 C 1.38119 * 119.99413 * 179.97438 * 3 2 1 5 5 C 1.38642 * 119.87685 * 359.97438 * 4 3 2 6 6 O 1.35903 * 119.95437 * 179.97438 * 5 4 3 7 7 C 1.38942 * 120.09829 * 0.02562 * 5 4 3 8 8 C 1.38173 * 119.81751 * 359.97438 * 7 5 4 9 9 C 1.51374 * 109.75328 * 179.97438 * 8 7 5 10 10 H 1.09006 * 110.29875 * 136.21324 * 9 8 7 11 11 C 1.52995 * 110.30699 * 258.26514 * 9 8 7 12 12 C 1.54492 * 105.22017 * 17.12642 * 9 8 7 13 13 C 1.51357 * 130.40710 * 179.97438 * 7 5 4 14 14 H 1.09007 * 110.30291 * 281.86998 * 13 7 5 15 15 N 1.46905 * 110.30789 * 43.92355 * 13 7 5 16 16 C 1.46899 * 111.00317 * 205.18032 * 15 13 7 17 17 C 1.52999 * 109.47227 * 174.84791 * 16 15 13 18 18 C 1.50697 * 109.46852 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00629 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99650 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00082 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47098 * 60.00190 * 22 20 18 24 24 H 1.48500 * 109.46755 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.46985 * 299.99623 * 22 20 18 26 26 H 1.09005 * 109.47057 * 90.00220 * 1 2 3 27 27 H 1.08997 * 109.47487 * 210.00237 * 1 2 3 28 28 H 1.08996 * 109.47381 * 330.00238 * 1 2 3 29 29 H 1.07994 * 119.99924 * 359.95624 * 3 2 1 30 30 H 1.08005 * 120.05923 * 179.97438 * 4 3 2 31 31 H 0.96700 * 114.00160 * 270.02632 * 6 5 4 32 32 H 1.09005 * 109.46852 * 58.54659 * 11 9 8 33 33 H 1.08994 * 109.47505 * 178.54941 * 11 9 8 34 34 H 1.09003 * 109.46963 * 298.55171 * 11 9 8 35 35 H 1.09000 * 110.90840 * 215.55121 * 12 9 8 36 36 H 1.09003 * 110.80397 * 91.94998 * 12 9 8 37 37 H 1.00894 * 110.99912 * 81.22601 * 15 13 7 38 38 H 1.09003 * 109.46854 * 294.84796 * 16 15 13 39 39 H 1.08995 * 109.47289 * 54.84008 * 16 15 13 40 40 H 1.08999 * 109.46850 * 299.99441 * 17 16 15 41 41 H 1.08998 * 109.46978 * 60.00081 * 17 16 15 42 42 H 0.96996 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1987 0.0000 4 6 3.5756 1.2025 0.0005 5 6 4.2695 0.0023 0.0016 6 8 5.6286 0.0043 0.0016 7 6 3.5777 -1.2026 0.0016 8 6 2.1960 -1.2015 0.0011 9 6 1.6832 -2.6257 0.0006 10 1 0.8604 -2.7317 0.7077 11 6 1.2293 -3.0261 -1.4046 12 6 2.8860 -3.4900 0.4398 13 6 4.0886 -2.6273 0.0021 14 1 4.4146 -2.9126 -0.9982 15 7 5.1944 -2.7721 0.9583 16 6 6.0729 -3.8878 0.5824 17 6 7.2786 -3.9272 1.5235 18 6 8.1794 -5.0722 1.1382 19 1 7.9180 -5.7085 0.3056 20 6 9.3369 -5.3081 1.8493 21 7 9.6550 -4.5335 2.8634 22 14 10.4532 -6.7278 1.3721 23 1 10.9219 -6.5412 -0.0246 24 1 11.6234 -6.7659 2.2855 25 1 9.7020 -8.0045 1.4758 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6517 2.1323 -0.0007 30 1 4.1139 2.1388 0.0001 31 1 6.0219 0.0044 -0.8818 32 1 2.0640 -2.9259 -2.0984 33 1 0.8872 -4.0609 -1.3949 34 1 0.4133 -2.3767 -1.7217 35 1 2.8868 -4.4483 -0.0797 36 1 2.8854 -3.6338 1.5203 37 1 4.8468 -2.8866 1.8985 38 1 5.5221 -4.8254 0.6582 39 1 6.4165 -3.7503 -0.4428 40 1 7.8294 -2.9896 1.4477 41 1 6.9349 -4.0648 2.5487 42 1 10.4695 -4.6993 3.3634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342410331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:51 Heat of formation + Delta-G solvation = -56.389070 kcal Electronic energy + Delta-G solvation = -21254.133390 eV Core-core repulsion = 18197.214408 eV Total energy + Delta-G solvation = -3056.918982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62675 -38.59680 -37.67279 -36.06759 -34.70315 -32.95966 -31.42186 -30.56219 -28.49944 -27.13619 -26.15917 -24.94402 -22.96142 -22.47704 -21.62329 -20.79590 -18.75080 -18.49547 -17.18849 -16.66727 -16.43107 -16.27619 -15.89632 -15.68093 -14.89246 -14.74029 -14.65474 -14.43021 -14.15889 -14.01059 -13.55330 -13.48311 -13.24140 -13.03704 -12.82817 -12.72499 -12.60047 -12.53614 -12.26451 -12.10845 -11.95834 -11.80088 -11.67410 -11.39657 -11.25763 -11.09848 -10.55805 -9.53217 -9.19548 -9.12148 -8.19312 -6.31720 0.37517 0.40743 1.39610 1.43604 1.51508 2.40630 2.67508 3.13568 3.30561 3.46611 3.53899 3.65111 3.98891 4.06525 4.14832 4.19706 4.37220 4.41776 4.53581 4.57765 4.59212 4.65772 4.78696 4.87755 4.90283 4.95510 5.00743 5.04860 5.08900 5.13402 5.15388 5.32427 5.40223 5.44703 5.48576 5.61047 5.68624 5.74712 5.80380 6.02557 6.16159 6.33234 6.54072 6.86143 7.02280 7.37590 8.92828 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027765 B = 0.003876 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.212572 B = 7222.818340 C = 7925.167171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.105 4.105 4 C -0.160 4.160 5 C 0.111 3.889 6 O -0.502 6.502 7 C -0.127 4.127 8 C -0.083 4.083 9 C -0.041 4.041 10 H 0.093 0.907 11 C -0.134 4.134 12 C -0.144 4.144 13 C 0.131 3.869 14 H 0.079 0.921 15 N -0.679 5.679 16 C 0.091 3.909 17 C 0.036 3.964 18 C -0.545 4.545 19 H 0.062 0.938 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.265 1.265 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.394 0.606 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.334 0.666 38 H 0.020 0.980 39 H 0.055 0.945 40 H -0.011 1.011 41 H -0.014 1.014 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.568 8.632 -9.518 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.178 4.178 5 C 0.066 3.934 6 O -0.313 6.313 7 C -0.128 4.128 8 C -0.084 4.084 9 C -0.060 4.060 10 H 0.111 0.889 11 C -0.191 4.191 12 C -0.183 4.183 13 C 0.021 3.979 14 H 0.097 0.903 15 N -0.309 5.309 16 C -0.038 4.038 17 C -0.002 4.002 18 C -0.583 4.583 19 H 0.080 0.920 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.190 1.190 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.155 0.845 31 H 0.250 0.750 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.151 0.849 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.008 0.992 41 H 0.004 0.996 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.088 9.123 -9.091 24.710 hybrid contribution 0.912 -1.211 -0.037 1.516 sum -20.176 7.912 -9.127 23.516 Atomic orbital electron populations 1.20786 0.89038 1.03499 1.03124 1.19748 0.97559 0.91163 1.00786 1.21110 0.92987 0.98479 0.99715 1.21527 0.95393 0.97277 1.03623 1.18422 0.83130 0.91636 1.00206 1.84904 1.16217 1.96425 1.33734 1.20997 0.94738 0.94519 1.02536 1.20521 0.92677 0.95575 0.99614 1.20565 0.97332 0.88922 0.99172 0.88889 1.21732 1.01219 1.02147 0.94036 1.23141 0.94762 0.99038 1.01320 1.20982 0.89810 0.90784 0.96289 0.90257 1.60410 1.19755 1.45689 1.05007 1.21744 0.93178 0.90116 0.98728 1.18863 0.92641 0.95093 0.93559 1.21595 1.07053 1.14260 1.15415 0.91998 1.26024 0.99572 0.99485 0.94800 1.70126 1.25714 1.40411 1.21071 0.85448 0.77794 0.79108 0.78359 1.19069 1.20857 1.18962 0.90101 0.91198 0.90399 0.82952 0.84462 0.74976 0.93575 0.90943 0.91115 0.89643 0.91400 0.84852 0.96179 0.92635 0.99229 0.99598 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.86 71.23 0.70 -0.70 16 2 C -0.09 -1.87 5.88 -19.82 -0.12 -1.98 16 3 C -0.11 -2.11 9.68 22.23 0.22 -1.89 16 4 C -0.16 -3.93 9.98 22.34 0.22 -3.70 16 5 C 0.11 3.36 6.69 22.54 0.15 3.51 16 6 O -0.50 -16.75 13.06 -92.46 -1.21 -17.95 16 7 C -0.13 -3.73 5.78 -19.50 -0.11 -3.85 16 8 C -0.08 -1.99 5.31 -19.60 -0.10 -2.09 16 9 C -0.04 -0.83 2.97 -10.82 -0.03 -0.86 16 10 H 0.09 1.61 7.61 -2.38 -0.02 1.59 16 11 C -0.13 -2.18 9.14 71.98 0.66 -1.53 16 12 C -0.14 -3.56 6.24 31.56 0.20 -3.37 16 13 C 0.13 4.04 3.12 44.83 0.14 4.18 16 14 H 0.08 2.48 7.73 -2.38 -0.02 2.46 16 15 N -0.68 -26.29 5.88 -491.99 -2.89 -29.19 16 16 C 0.09 4.01 5.52 86.30 0.48 4.48 16 17 C 0.04 2.02 5.28 29.85 0.16 2.18 16 18 C -0.54 -32.06 9.11 25.60 0.23 -31.82 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 21 N -0.93 -58.93 13.29 21.45 0.28 -58.65 16 22 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 26 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.07 0.86 7.28 -2.39 -0.02 0.84 16 28 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.39 9.95 9.06 -74.06 -0.67 9.28 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.96 7.90 -2.39 -0.02 1.94 16 36 H 0.07 1.77 7.61 -2.39 -0.02 1.75 16 37 H 0.33 13.05 8.17 -89.70 -0.73 12.32 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -71.67 343.68 1.07 -70.60 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.39 Total: 25.05 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 3.25 Total: -37.04 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -2.61 Total: -87.83 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.21 Total: -17.95 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.67 1.07 -70.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.208 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds