Wall clock time and date at job start Mon Mar 30 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38172 * 119.83695 * 2 1 4 4 C 1.38111 * 120.00286 * 179.97438 * 3 2 1 5 5 C 1.38653 * 119.86892 * 0.02562 * 4 3 2 6 6 O 1.35899 * 119.94772 * 180.02562 * 5 4 3 7 7 C 1.38808 * 120.14768 * 359.92712 * 5 4 3 8 8 C 1.38340 * 119.79250 * 0.15679 * 7 5 4 9 9 C 1.51373 * 109.77367 * 179.86579 * 8 7 5 10 10 H 1.09004 * 110.30042 * 223.80593 * 9 8 7 11 11 C 1.53001 * 110.30148 * 101.65969 * 9 8 7 12 12 C 1.54339 * 105.17658 * 342.73124 * 9 8 7 13 13 C 1.51355 * 130.51982 * 179.82699 * 7 5 4 14 14 H 1.09000 * 110.30244 * 78.39599 * 13 7 5 15 15 N 1.46901 * 110.30442 * 316.34274 * 13 7 5 16 16 C 1.46899 * 110.99979 * 158.99227 * 15 13 7 17 17 C 1.53002 * 109.47240 * 174.83394 * 16 15 13 18 18 C 1.50695 * 109.47269 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00233 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00446 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47221 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47044 * 59.99624 * 22 20 18 25 25 H 1.48503 * 109.46778 * 300.00089 * 22 20 18 26 26 H 1.08993 * 109.47291 * 269.97970 * 1 2 3 27 27 H 1.09006 * 109.46760 * 29.98005 * 1 2 3 28 28 H 1.09005 * 109.47079 * 149.97519 * 1 2 3 29 29 H 1.08003 * 120.00001 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.06904 * 179.97438 * 4 3 2 31 31 H 0.96694 * 114.00379 * 90.00087 * 6 5 4 32 32 H 1.09008 * 109.46932 * 304.24641 * 11 9 8 33 33 H 1.08995 * 109.47461 * 64.24863 * 11 9 8 34 34 H 1.09006 * 109.47073 * 184.25055 * 11 9 8 35 35 H 1.09004 * 110.82350 * 268.11647 * 12 9 8 36 36 H 1.09002 * 110.82497 * 144.56288 * 12 9 8 37 37 H 1.00900 * 111.00033 * 35.04195 * 15 13 7 38 38 H 1.09005 * 109.47302 * 54.83709 * 16 15 13 39 39 H 1.08998 * 109.47246 * 294.83321 * 16 15 13 40 40 H 1.09005 * 109.46715 * 59.99956 * 17 16 15 41 41 H 1.08998 * 109.46942 * 300.00114 * 17 16 15 42 42 H 0.96998 * 119.99963 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 0.0005 5 6 4.2695 0.0022 0.0005 6 8 5.6285 0.0043 0.0016 7 6 3.5793 -1.2021 0.0015 8 6 2.1959 -1.2015 -0.0008 9 6 1.6832 -2.6258 -0.0024 10 1 0.8621 -2.7313 -0.7115 11 6 1.2282 -3.0278 1.4019 12 6 2.8854 -3.4875 -0.4431 13 6 4.0886 -2.6274 -0.0017 14 1 4.4128 -2.9154 0.9983 15 7 5.1956 -2.7710 -0.9567 16 6 6.0154 -3.9478 -0.6392 17 6 7.0765 -4.1382 -1.7249 18 6 7.9172 -5.3458 -1.3995 19 1 7.7152 -5.9199 -0.5072 20 6 8.9449 -5.7172 -2.2402 21 7 9.1913 -5.0178 -3.3264 22 14 9.9866 -7.2146 -1.8372 23 1 11.0165 -7.3992 -2.8910 24 1 9.1198 -8.4188 -1.7765 25 1 10.6511 -7.0164 -0.5241 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6518 2.1324 -0.0004 30 1 4.1140 2.1388 0.0001 31 1 6.0212 0.0045 0.8852 32 1 2.0480 -2.8812 2.1053 33 1 0.3797 -2.4117 1.6993 34 1 0.9329 -4.0771 1.4017 35 1 2.8856 -3.6284 -1.5240 36 1 2.8846 -4.4471 0.0739 37 1 5.7593 -1.9347 -0.9852 38 1 5.3796 -4.8321 -0.5936 39 1 6.5037 -3.8013 0.3243 40 1 7.7124 -3.2540 -1.7705 41 1 6.5883 -4.2847 -2.6883 42 1 8.6502 -4.2405 -3.5359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342410334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:55 Heat of formation + Delta-G solvation = -42.554679 kcal Electronic energy + Delta-G solvation = -21293.309008 eV Core-core repulsion = 18236.989930 eV Total energy + Delta-G solvation = -3056.319078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78467 -37.66367 -36.67963 -34.76308 -33.08110 -31.98232 -30.21684 -29.01130 -27.30837 -26.33488 -24.61277 -23.22697 -22.04094 -21.09993 -20.61402 -19.66168 -17.80401 -16.69607 -16.24327 -15.63870 -15.45033 -15.39823 -14.23469 -14.05100 -13.84552 -13.68866 -13.64610 -13.47976 -13.00997 -12.87961 -12.49446 -12.38085 -12.04547 -11.95362 -11.77461 -11.58525 -11.27295 -10.94081 -10.91615 -10.76343 -10.74239 -10.33903 -10.11099 -10.05386 -9.65344 -8.76984 -8.50431 -8.43787 -8.26155 -7.77536 -6.29936 -3.98447 1.15455 1.23693 3.46433 3.47154 3.49267 3.68010 4.13723 4.34772 4.45399 4.57641 4.77132 4.82735 4.91410 4.96153 5.13980 5.16702 5.32710 5.38484 5.43772 5.47956 5.49811 5.52685 5.65948 5.76523 5.83003 5.88522 5.95471 6.06847 6.17292 6.21320 6.29099 6.30446 6.38359 6.44700 6.55405 6.76241 6.90879 7.35975 7.59542 7.63896 7.77435 8.02674 8.32005 8.53003 8.95278 9.74253 11.11257 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.003873 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.448610 B = 7227.615091 C = 7909.503793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.108 4.108 4 C -0.144 4.144 5 C 0.116 3.884 6 O -0.494 6.494 7 C -0.109 4.109 8 C -0.069 4.069 9 C -0.052 4.052 10 H 0.081 0.919 11 C -0.138 4.138 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.051 0.949 15 N -0.685 5.685 16 C 0.074 3.926 17 C 0.014 3.986 18 C -0.603 4.603 19 H 0.047 0.953 20 C 0.015 3.985 21 N -0.913 5.913 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.289 1.289 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.387 0.613 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.349 0.651 38 H 0.058 0.942 39 H 0.014 0.986 40 H 0.005 0.995 41 H 0.016 0.984 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 11.217 10.758 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.162 4.162 5 C 0.071 3.929 6 O -0.303 6.303 7 C -0.110 4.110 8 C -0.070 4.070 9 C -0.071 4.071 10 H 0.099 0.901 11 C -0.196 4.196 12 C -0.144 4.144 13 C 0.020 3.980 14 H 0.068 0.932 15 N -0.319 5.319 16 C -0.055 4.055 17 C -0.023 4.023 18 C -0.641 4.641 19 H 0.065 0.935 20 C -0.189 4.189 21 N -0.549 5.549 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.216 1.216 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.243 0.757 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.170 0.830 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.023 0.977 41 H 0.034 0.966 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.310 9.968 9.145 21.969 hybrid contribution -0.614 1.387 1.870 2.408 sum -17.925 11.354 11.015 23.907 Atomic orbital electron populations 1.20747 0.91279 1.02697 1.02061 1.19425 0.95971 0.91730 1.01370 1.20753 0.93474 0.97276 1.01135 1.21259 0.94517 0.97377 1.03072 1.18058 0.82767 0.91049 1.00986 1.84848 1.16014 1.96227 1.33258 1.21031 0.94608 0.94727 1.00673 1.20309 0.93131 0.94503 0.99027 1.20645 0.98503 0.90130 0.97797 0.90080 1.21762 1.01060 1.01216 0.95513 1.22482 0.91808 0.97354 1.02782 1.20931 0.93292 0.89157 0.94590 0.93153 1.60778 1.13694 1.08084 1.49346 1.22033 0.94489 0.91062 0.97879 1.19165 0.92530 0.96572 0.94061 1.21998 1.17959 1.13214 1.10974 0.93513 1.25836 0.97040 1.02426 0.93626 1.70757 1.40940 1.18259 1.24935 0.83543 0.76069 0.74946 0.75650 1.20769 1.21478 1.21554 0.91392 0.91719 0.91478 0.85653 0.85337 0.75739 0.92617 0.92611 0.92001 0.89554 0.90763 0.83009 0.92336 0.96752 0.97703 0.96605 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.87 36.00 0.36 -0.55 16 2 C -0.08 -0.94 5.88 -104.55 -0.62 -1.56 16 3 C -0.11 -1.15 9.68 -39.65 -0.38 -1.54 16 4 C -0.14 -1.70 9.98 -39.47 -0.39 -2.09 16 5 C 0.12 1.61 6.59 -39.22 -0.26 1.36 16 6 O -0.49 -6.79 11.55 -19.42 -0.22 -7.02 16 7 C -0.11 -1.60 5.76 -104.05 -0.60 -2.20 16 8 C -0.07 -0.88 5.32 -104.16 -0.55 -1.43 16 9 C -0.05 -0.60 2.97 -90.74 -0.27 -0.87 16 10 H 0.08 0.85 7.62 -51.93 -0.40 0.45 16 11 C -0.14 -1.32 9.14 37.16 0.34 -0.98 16 12 C -0.11 -1.50 6.08 -25.33 -0.15 -1.65 16 13 C 0.13 2.07 3.13 -67.84 -0.21 1.85 16 14 H 0.05 0.80 7.92 -51.93 -0.41 0.39 16 15 N -0.69 -13.34 6.27 -106.86 -0.67 -14.01 16 16 C 0.07 1.64 5.44 -3.82 -0.02 1.62 16 17 C 0.01 0.38 4.59 -27.88 -0.13 0.26 16 18 C -0.60 -17.81 9.11 -34.44 -0.31 -18.12 16 19 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 20 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 21 N -0.91 -28.95 13.65 55.43 0.76 -28.20 16 22 Si 1.07 25.91 29.90 -169.99 -5.08 20.83 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.07 0.53 7.28 -51.93 -0.38 0.15 16 29 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.39 3.63 9.06 45.56 0.41 4.04 16 32 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 36 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 37 H 0.35 6.93 6.42 -39.29 -0.25 6.67 16 38 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 41 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 42 H 0.27 8.62 7.22 -40.82 -0.29 8.32 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -33.56 339.85 -9.38 -42.94 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -5.98 Total: 5.89 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -3.30 Total: -25.56 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.09 Total: -42.21 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.22 Total: -7.02 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.56 -9.38 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.385 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds