Wall clock time and date at job start Mon Mar 30 2020 01:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38172 * 119.83695 * 2 1 4 4 C 1.38111 * 120.00286 * 179.97438 * 3 2 1 5 5 C 1.38653 * 119.86892 * 0.02562 * 4 3 2 6 6 O 1.35899 * 119.94772 * 180.02562 * 5 4 3 7 7 C 1.38808 * 120.14768 * 359.92712 * 5 4 3 8 8 C 1.38340 * 119.79250 * 0.15679 * 7 5 4 9 9 C 1.51373 * 109.77367 * 179.86579 * 8 7 5 10 10 H 1.09004 * 110.30042 * 223.80593 * 9 8 7 11 11 C 1.53001 * 110.30148 * 101.65969 * 9 8 7 12 12 C 1.54339 * 105.17658 * 342.73124 * 9 8 7 13 13 C 1.51355 * 130.51982 * 179.82699 * 7 5 4 14 14 H 1.09000 * 110.30244 * 78.39599 * 13 7 5 15 15 N 1.46901 * 110.30442 * 316.34274 * 13 7 5 16 16 C 1.46899 * 110.99979 * 158.99227 * 15 13 7 17 17 C 1.53002 * 109.47240 * 174.83394 * 16 15 13 18 18 C 1.50695 * 109.47269 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00233 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99839 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00446 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47221 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47044 * 59.99624 * 22 20 18 25 25 H 1.48503 * 109.46778 * 300.00089 * 22 20 18 26 26 H 1.08993 * 109.47291 * 269.97970 * 1 2 3 27 27 H 1.09006 * 109.46760 * 29.98005 * 1 2 3 28 28 H 1.09005 * 109.47079 * 149.97519 * 1 2 3 29 29 H 1.08003 * 120.00001 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.06904 * 179.97438 * 4 3 2 31 31 H 0.96694 * 114.00379 * 90.00087 * 6 5 4 32 32 H 1.09008 * 109.46932 * 304.24641 * 11 9 8 33 33 H 1.08995 * 109.47461 * 64.24863 * 11 9 8 34 34 H 1.09006 * 109.47073 * 184.25055 * 11 9 8 35 35 H 1.09004 * 110.82350 * 268.11647 * 12 9 8 36 36 H 1.09002 * 110.82497 * 144.56288 * 12 9 8 37 37 H 1.00900 * 111.00033 * 35.04195 * 15 13 7 38 38 H 1.09005 * 109.47302 * 54.83709 * 16 15 13 39 39 H 1.08998 * 109.47246 * 294.83321 * 16 15 13 40 40 H 1.09005 * 109.46715 * 59.99956 * 17 16 15 41 41 H 1.08998 * 109.46942 * 300.00114 * 17 16 15 42 42 H 0.96998 * 119.99963 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1986 0.0000 4 6 3.5755 1.2026 0.0005 5 6 4.2695 0.0022 0.0005 6 8 5.6285 0.0043 0.0016 7 6 3.5793 -1.2021 0.0015 8 6 2.1959 -1.2015 -0.0008 9 6 1.6832 -2.6258 -0.0024 10 1 0.8621 -2.7313 -0.7115 11 6 1.2282 -3.0278 1.4019 12 6 2.8854 -3.4875 -0.4431 13 6 4.0886 -2.6274 -0.0017 14 1 4.4128 -2.9154 0.9983 15 7 5.1956 -2.7710 -0.9567 16 6 6.0154 -3.9478 -0.6392 17 6 7.0765 -4.1382 -1.7249 18 6 7.9172 -5.3458 -1.3995 19 1 7.7152 -5.9199 -0.5072 20 6 8.9449 -5.7172 -2.2402 21 7 9.1913 -5.0178 -3.3264 22 14 9.9866 -7.2146 -1.8372 23 1 11.0165 -7.3992 -2.8910 24 1 9.1198 -8.4188 -1.7765 25 1 10.6511 -7.0164 -0.5241 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6518 2.1324 -0.0004 30 1 4.1140 2.1388 0.0001 31 1 6.0212 0.0045 0.8852 32 1 2.0480 -2.8812 2.1053 33 1 0.3797 -2.4117 1.6993 34 1 0.9329 -4.0771 1.4017 35 1 2.8856 -3.6284 -1.5240 36 1 2.8846 -4.4471 0.0739 37 1 5.7593 -1.9347 -0.9852 38 1 5.3796 -4.8321 -0.5936 39 1 6.5037 -3.8013 0.3243 40 1 7.7124 -3.2540 -1.7705 41 1 6.5883 -4.2847 -2.6883 42 1 8.6502 -4.2405 -3.5359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342410334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:55 Heat of formation + Delta-G solvation = -64.773727 kcal Electronic energy + Delta-G solvation = -21294.272498 eV Core-core repulsion = 18236.989930 eV Total energy + Delta-G solvation = -3057.282568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77221 -38.69758 -37.91414 -36.33195 -34.91951 -33.05088 -31.39287 -30.45606 -28.59382 -27.20987 -26.11009 -24.88168 -23.14583 -22.69998 -21.84324 -20.73782 -19.01746 -18.68510 -17.29806 -17.00635 -16.62853 -16.38544 -15.65027 -15.55249 -15.29745 -14.85931 -14.79070 -14.52714 -14.37941 -14.06974 -13.66559 -13.59478 -13.36951 -13.21830 -12.77513 -12.74029 -12.53958 -12.47881 -12.23991 -11.97990 -11.96100 -11.79188 -11.75215 -11.59228 -11.31767 -10.75284 -10.56857 -9.81649 -9.37015 -9.23097 -8.72232 -6.42726 0.23409 0.30307 1.51528 1.61176 1.80606 2.54721 2.57564 3.12194 3.14220 3.38044 3.42308 3.48669 3.90109 4.00500 4.09649 4.11670 4.30648 4.31243 4.38153 4.47269 4.51356 4.55235 4.73829 4.81459 4.85678 4.87115 4.91974 4.97952 5.04264 5.09651 5.13441 5.21621 5.27774 5.34024 5.37371 5.40905 5.47242 5.65104 5.88774 5.92176 6.12796 6.17189 6.41080 6.55562 6.75140 7.41149 8.68621 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027486 B = 0.003873 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.448610 B = 7227.615091 C = 7909.503793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.103 4.103 4 C -0.150 4.150 5 C 0.096 3.904 6 O -0.513 6.513 7 C -0.139 4.139 8 C -0.077 4.077 9 C -0.044 4.044 10 H 0.095 0.905 11 C -0.133 4.133 12 C -0.108 4.108 13 C 0.130 3.870 14 H 0.048 0.952 15 N -0.693 5.693 16 C 0.093 3.907 17 C 0.019 3.981 18 C -0.621 4.621 19 H 0.054 0.946 20 C -0.040 4.040 21 N -0.936 5.936 22 Si 1.123 2.877 23 H -0.283 1.283 24 H -0.267 1.267 25 H -0.267 1.267 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.401 0.599 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.344 0.656 38 H 0.060 0.940 39 H 0.016 0.984 40 H -0.018 1.018 41 H -0.012 1.012 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.107 11.393 12.253 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.168 4.168 5 C 0.051 3.949 6 O -0.325 6.325 7 C -0.140 4.140 8 C -0.077 4.077 9 C -0.063 4.063 10 H 0.113 0.887 11 C -0.190 4.190 12 C -0.146 4.146 13 C 0.020 3.980 14 H 0.066 0.934 15 N -0.326 5.326 16 C -0.036 4.036 17 C -0.018 4.018 18 C -0.659 4.659 19 H 0.072 0.928 20 C -0.237 4.237 21 N -0.573 5.573 22 Si 0.942 3.058 23 H -0.208 1.208 24 H -0.192 1.192 25 H -0.192 1.192 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.175 0.825 30 H 0.162 0.838 31 H 0.259 0.741 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.165 0.835 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.000 1.000 41 H 0.006 0.994 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.288 10.164 10.665 24.272 hybrid contribution -0.058 1.436 1.397 2.004 sum -19.346 11.600 12.062 25.580 Atomic orbital electron populations 1.20817 0.88809 1.03672 1.03330 1.19817 0.97785 0.91080 1.00038 1.21178 0.93066 0.98555 0.99280 1.21504 0.95360 0.97168 1.02761 1.18348 0.82759 0.91784 1.01978 1.84796 1.16571 1.96297 1.34816 1.21027 0.95767 0.93960 1.03282 1.20540 0.92439 0.95733 0.99024 1.20615 0.97438 0.88898 0.99313 0.88714 1.21735 1.01261 1.02277 0.93756 1.22477 0.92589 0.98056 1.01480 1.21002 0.92292 0.91210 0.93471 0.93433 1.60723 1.13890 1.06855 1.51137 1.21657 0.93523 0.92539 0.95862 1.19055 0.93257 0.95115 0.94418 1.22420 1.18368 1.13847 1.11232 0.92818 1.27588 0.98470 1.04896 0.92774 1.70907 1.41405 1.18556 1.26455 0.82891 0.74779 0.71764 0.76321 1.20802 1.19157 1.19194 0.89820 0.90141 0.91201 0.82477 0.83777 0.74133 0.93659 0.90763 0.90922 0.91686 0.90102 0.83514 0.92118 0.96597 0.99958 0.99374 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.87 71.24 0.70 -0.67 16 2 C -0.09 -1.71 5.88 -19.82 -0.12 -1.82 16 3 C -0.10 -1.91 9.68 22.22 0.22 -1.70 16 4 C -0.15 -3.34 9.98 22.34 0.22 -3.12 16 5 C 0.10 2.67 6.59 22.51 0.15 2.82 16 6 O -0.51 -14.61 11.55 -92.41 -1.07 -15.68 16 7 C -0.14 -4.08 5.76 -19.50 -0.11 -4.19 16 8 C -0.08 -1.86 5.32 -19.56 -0.10 -1.96 16 9 C -0.04 -0.95 2.97 -10.87 -0.03 -0.98 16 10 H 0.09 1.78 7.62 -2.38 -0.02 1.77 16 11 C -0.13 -2.25 9.14 71.98 0.66 -1.59 16 12 C -0.11 -3.05 6.08 31.50 0.19 -2.86 16 13 C 0.13 4.20 3.13 44.83 0.14 4.34 16 14 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 15 N -0.69 -28.08 6.27 -491.99 -3.09 -31.17 16 16 C 0.09 4.27 5.44 86.30 0.47 4.74 16 17 C 0.02 1.08 4.59 29.85 0.14 1.22 16 18 C -0.62 -37.29 9.11 25.60 0.23 -37.06 16 19 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 20 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 21 N -0.94 -60.92 13.65 21.45 0.29 -60.62 16 22 Si 1.12 51.61 29.90 68.60 2.05 53.66 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 0.78 8.08 -2.38 -0.02 0.76 16 28 H 0.07 0.86 7.28 -2.38 -0.02 0.84 16 29 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.40 7.93 9.06 -74.06 -0.67 7.26 16 32 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 36 H 0.08 2.11 7.90 -2.39 -0.02 2.09 16 37 H 0.34 14.38 6.42 -89.69 -0.58 13.81 16 38 H 0.06 2.73 7.98 -2.38 -0.02 2.71 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H -0.02 -1.08 8.01 -2.38 -0.02 -1.10 16 41 H -0.01 -0.75 8.01 -2.39 -0.02 -0.76 16 42 H 0.25 16.92 7.22 -92.71 -0.67 16.25 16 Total: -1.00 -74.12 339.85 1.27 -72.85 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.13 Total: 25.76 kcal Atomic # 6 Polarization: -48.01 SS G_CDS: 3.22 Total: -44.79 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -2.79 Total: -91.79 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.07 Total: -15.68 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.05 Total: 53.66 kcal Total: -74.12 1.27 -72.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342410334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.072 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds