Wall clock time and date at job start Mon Mar 30 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.00270 * 2 1 4 4 C 1.38236 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00264 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00053 * 359.97438 * 4 3 2 7 7 C 1.38230 * 119.99966 * 359.96034 * 6 4 3 8 8 C 1.50705 * 120.00248 * 179.97438 * 7 6 4 9 9 C 1.52994 * 109.46849 * 90.00051 * 8 7 6 10 10 N 1.46904 * 109.47076 * 180.02562 * 9 8 7 11 11 C 1.47960 * 110.99975 * 190.00073 * 10 9 8 12 12 C 1.53940 * 86.18020 * 222.41827 * 11 10 9 13 13 O 1.42900 * 113.73337 * 269.26005 * 12 11 10 14 14 C 1.50694 * 113.73364 * 138.08016 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.89939 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.90102 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.48189 * 111.06803 * 90.56485 * 10 9 8 23 23 C 1.38238 * 120.00055 * 0.27751 * 7 6 4 24 24 H 1.09001 * 109.46658 * 89.99867 * 1 2 3 25 25 H 1.08993 * 109.47404 * 209.99860 * 1 2 3 26 26 H 1.08999 * 109.46650 * 330.00528 * 1 2 3 27 27 H 1.07997 * 120.00166 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.46694 * 270.02171 * 5 4 3 29 29 H 1.08999 * 109.46742 * 30.01360 * 5 4 3 30 30 H 1.08998 * 109.47409 * 150.01904 * 5 4 3 31 31 H 1.07995 * 120.00052 * 179.97438 * 6 4 3 32 32 H 1.08994 * 109.46817 * 330.00152 * 8 7 6 33 33 H 1.08995 * 109.46793 * 210.00116 * 8 7 6 34 34 H 1.09003 * 109.47110 * 60.00320 * 9 8 7 35 35 H 1.09005 * 109.47409 * 300.00449 * 9 8 7 36 36 H 1.09000 * 113.75922 * 108.10132 * 11 10 9 37 37 H 1.08996 * 113.85941 * 336.74802 * 11 10 9 38 38 H 0.96699 * 113.99865 * 178.10203 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08996 * 113.76245 * 23.24297 * 22 10 9 41 41 H 1.08999 * 113.82580 * 251.80952 * 22 10 9 42 42 H 1.07999 * 120.00485 * 179.72787 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0002 -0.0005 7 6 3.5805 -1.1973 0.0008 8 6 4.3340 -2.5025 0.0002 9 6 4.5908 -2.9436 1.4425 10 7 5.3258 -4.2155 1.4420 11 6 5.3850 -4.7943 2.8024 12 6 6.8548 -5.1250 2.4862 13 8 7.0414 -6.4172 1.9051 14 6 7.7973 -4.8540 3.6304 15 1 7.4128 -4.4924 4.5727 16 6 9.1505 -5.0675 3.4744 17 7 9.6187 -5.5083 2.3271 18 14 10.3188 -4.7308 4.8925 19 1 11.7094 -5.0383 4.4719 20 1 10.2239 -3.3014 5.2833 21 1 9.9517 -5.5858 6.0499 22 6 6.7896 -3.9850 1.4538 23 6 2.1982 -1.1972 -0.0036 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3632 0.8900 0.5138 27 1 1.6583 2.1324 -0.0004 28 1 4.5151 2.8166 -1.0289 29 1 3.7455 3.2618 0.5130 30 1 5.2870 2.3718 0.5121 31 1 5.3517 -0.0002 -0.0014 32 1 5.2856 -2.3723 -0.5149 33 1 3.7441 -3.2622 -0.5125 34 1 3.6391 -3.0737 1.9577 35 1 5.1806 -2.1837 1.9554 36 1 4.7552 -5.6742 2.9332 37 1 5.2616 -4.0609 3.5993 38 1 7.9598 -6.6175 1.6782 39 1 10.5707 -5.6582 2.2173 40 1 7.0779 -3.0131 1.8541 41 1 7.2799 -4.2196 0.5090 42 1 1.6581 -2.1325 -0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349619463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:48 Heat of formation + Delta-G solvation = -11.206148 kcal Electronic energy + Delta-G solvation = -20785.934198 eV Core-core repulsion = 17730.974495 eV Total energy + Delta-G solvation = -3054.959704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.70056 -38.82935 -34.87418 -33.55855 -33.42472 -32.06108 -29.83386 -27.50645 -26.70404 -26.58755 -25.06027 -24.38067 -21.47265 -20.74720 -20.05945 -18.57732 -17.17994 -16.29321 -15.82820 -15.17531 -15.08742 -14.42749 -14.25931 -14.20460 -13.89166 -13.35409 -13.33549 -13.08502 -12.90870 -12.71051 -12.62804 -12.11345 -11.95299 -11.83246 -11.58595 -11.38232 -11.21257 -11.01787 -10.98260 -10.90959 -10.51929 -10.46425 -10.21781 -9.92844 -9.25921 -8.63022 -8.53952 -8.52155 -8.19610 -7.76511 -6.24464 -4.34384 1.38175 1.39609 3.21636 3.26977 3.29585 3.71933 4.26572 4.65766 4.72253 4.75791 4.97488 5.05858 5.14262 5.24830 5.30982 5.36183 5.43685 5.50003 5.53870 5.62085 5.66236 5.72592 5.75704 5.94142 5.98827 6.02858 6.10662 6.19312 6.23285 6.33937 6.46022 6.52497 6.56670 6.58439 6.71999 6.77619 7.06363 7.07326 7.24503 7.38945 7.77307 8.01011 8.04658 8.67139 9.35504 9.64270 10.81343 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.003633 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.034285 B = 7704.676023 C = 8346.753391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.132 4.132 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.063 4.063 8 C -0.072 4.072 9 C 0.028 3.972 10 N -0.481 5.481 11 C 0.009 3.991 12 C 0.244 3.756 13 O -0.572 6.572 14 C -0.539 4.539 15 H 0.064 0.936 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.276 1.276 21 H -0.274 1.274 22 C -0.012 4.012 23 C -0.123 4.123 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.387 0.613 39 H 0.271 0.729 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 12.737 -5.065 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.150 4.150 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.141 4.141 7 C -0.063 4.063 8 C -0.110 4.110 9 C -0.101 4.101 10 N -0.204 5.204 11 C -0.120 4.120 12 C 0.203 3.797 13 O -0.383 6.383 14 C -0.578 4.578 15 H 0.082 0.918 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.730 3.270 19 H -0.210 1.210 20 H -0.201 1.201 21 H -0.200 1.200 22 C -0.141 4.141 23 C -0.142 4.142 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.072 12.286 -5.613 18.797 hybrid contribution 1.592 0.916 1.255 2.224 sum -11.480 13.202 -4.358 18.030 Atomic orbital electron populations 1.20769 0.91422 1.02611 1.02111 1.19865 0.95836 0.93156 0.99634 1.20810 0.93477 0.97293 1.03410 1.19875 0.93790 0.95216 0.99431 1.20781 0.99997 0.94089 1.02152 1.20975 0.99827 0.91468 1.01817 1.20005 0.93690 0.95298 0.97349 1.20503 0.99833 0.92729 0.97933 1.22562 0.99044 0.93218 0.95251 1.68495 1.07934 1.18640 1.25297 1.24094 0.99453 0.98530 0.89881 1.19743 0.89622 0.81130 0.89214 1.86042 1.34776 1.34119 1.83325 1.21628 0.91933 1.44985 0.99211 0.91784 1.25053 0.98243 0.93775 0.95996 1.69423 1.14851 1.45740 1.23750 0.86489 0.79472 0.78875 0.82214 1.21013 1.20099 1.19955 1.24778 0.86888 1.00851 1.01596 1.20940 0.93643 0.97474 1.02097 0.91365 0.91551 0.91783 0.86564 0.91330 0.91766 0.91459 0.86146 0.91039 0.90509 0.92008 0.94339 0.90755 0.91858 0.75865 0.91906 0.92310 0.91021 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.08 -0.98 5.88 -104.62 -0.62 -1.60 16 3 C -0.13 -1.49 9.36 -39.59 -0.37 -1.86 16 4 C -0.08 -0.99 5.88 -104.62 -0.62 -1.61 16 5 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 6 C -0.12 -1.65 9.36 -39.58 -0.37 -2.02 16 7 C -0.06 -0.88 5.13 -104.62 -0.54 -1.42 16 8 C -0.07 -1.11 5.66 -27.88 -0.16 -1.27 16 9 C 0.03 0.50 4.78 -3.83 -0.02 0.48 16 10 N -0.48 -10.20 6.16 -238.02 -1.47 -11.67 16 11 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 12 C 0.24 6.27 1.40 -90.83 -0.13 6.14 16 13 O -0.57 -15.62 13.48 -35.23 -0.48 -16.09 16 14 C -0.54 -14.55 8.61 -34.44 -0.30 -14.85 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.90 5.40 -17.82 -0.10 1.80 16 17 N -0.90 -24.17 11.20 55.43 0.62 -23.55 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.01 -0.28 7.37 -2.63 -0.02 -0.30 16 23 C -0.12 -1.59 9.36 -39.58 -0.37 -1.96 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 33 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.04 0.70 7.39 -51.93 -0.38 0.31 16 36 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.06 1.34 7.88 -51.93 -0.41 0.93 16 38 H 0.39 10.70 6.60 45.56 0.30 11.00 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.37 7.44 -51.93 -0.39 0.98 16 41 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -28.26 345.98 -10.34 -38.61 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.32 Total: 11.59 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -2.89 Total: -19.57 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.85 Total: -35.22 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.48 Total: -16.09 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.26 -10.34 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349619463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.400 kcal (2) G-P(sol) polarization free energy of solvation -28.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds