Wall clock time and date at job start Mon Mar 30 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.00270 * 2 1 4 4 C 1.38236 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.00264 * 179.97438 * 4 3 2 6 6 C 1.38238 * 120.00053 * 359.97438 * 4 3 2 7 7 C 1.38230 * 119.99966 * 359.96034 * 6 4 3 8 8 C 1.50705 * 120.00248 * 179.97438 * 7 6 4 9 9 C 1.52994 * 109.46849 * 90.00051 * 8 7 6 10 10 N 1.46904 * 109.47076 * 180.02562 * 9 8 7 11 11 C 1.47960 * 110.99975 * 190.00073 * 10 9 8 12 12 C 1.53940 * 86.18020 * 222.41827 * 11 10 9 13 13 O 1.42900 * 113.73337 * 269.26005 * 12 11 10 14 14 C 1.50694 * 113.73364 * 138.08016 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.89939 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.90102 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.48189 * 111.06803 * 90.56485 * 10 9 8 23 23 C 1.38238 * 120.00055 * 0.27751 * 7 6 4 24 24 H 1.09001 * 109.46658 * 89.99867 * 1 2 3 25 25 H 1.08993 * 109.47404 * 209.99860 * 1 2 3 26 26 H 1.08999 * 109.46650 * 330.00528 * 1 2 3 27 27 H 1.07997 * 120.00166 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.46694 * 270.02171 * 5 4 3 29 29 H 1.08999 * 109.46742 * 30.01360 * 5 4 3 30 30 H 1.08998 * 109.47409 * 150.01904 * 5 4 3 31 31 H 1.07995 * 120.00052 * 179.97438 * 6 4 3 32 32 H 1.08994 * 109.46817 * 330.00152 * 8 7 6 33 33 H 1.08995 * 109.46793 * 210.00116 * 8 7 6 34 34 H 1.09003 * 109.47110 * 60.00320 * 9 8 7 35 35 H 1.09005 * 109.47409 * 300.00449 * 9 8 7 36 36 H 1.09000 * 113.75922 * 108.10132 * 11 10 9 37 37 H 1.08996 * 113.85941 * 336.74802 * 11 10 9 38 38 H 0.96699 * 113.99865 * 178.10203 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08996 * 113.76245 * 23.24297 * 22 10 9 41 41 H 1.08999 * 113.82580 * 251.80952 * 22 10 9 42 42 H 1.07999 * 120.00485 * 179.72787 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3342 2.5021 -0.0011 6 6 4.2717 -0.0002 -0.0005 7 6 3.5805 -1.1973 0.0008 8 6 4.3340 -2.5025 0.0002 9 6 4.5908 -2.9436 1.4425 10 7 5.3258 -4.2155 1.4420 11 6 5.3850 -4.7943 2.8024 12 6 6.8548 -5.1250 2.4862 13 8 7.0414 -6.4172 1.9051 14 6 7.7973 -4.8540 3.6304 15 1 7.4128 -4.4924 4.5727 16 6 9.1505 -5.0675 3.4744 17 7 9.6187 -5.5083 2.3271 18 14 10.3188 -4.7308 4.8925 19 1 11.7094 -5.0383 4.4719 20 1 10.2239 -3.3014 5.2833 21 1 9.9517 -5.5858 6.0499 22 6 6.7896 -3.9850 1.4538 23 6 2.1982 -1.1972 -0.0036 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3632 0.8900 0.5138 27 1 1.6583 2.1324 -0.0004 28 1 4.5151 2.8166 -1.0289 29 1 3.7455 3.2618 0.5130 30 1 5.2870 2.3718 0.5121 31 1 5.3517 -0.0002 -0.0014 32 1 5.2856 -2.3723 -0.5149 33 1 3.7441 -3.2622 -0.5125 34 1 3.6391 -3.0737 1.9577 35 1 5.1806 -2.1837 1.9554 36 1 4.7552 -5.6742 2.9332 37 1 5.2616 -4.0609 3.5993 38 1 7.9598 -6.6175 1.6782 39 1 10.5707 -5.6582 2.2173 40 1 7.0779 -3.0131 1.8541 41 1 7.2799 -4.2196 0.5090 42 1 1.6581 -2.1325 -0.0070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349619463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:47 Heat of formation + Delta-G solvation = -28.632065 kcal Electronic energy + Delta-G solvation = -20786.689843 eV Core-core repulsion = 17730.974495 eV Total energy + Delta-G solvation = -3055.715348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93281 -40.34917 -36.57461 -34.83933 -34.37604 -34.12696 -31.18647 -28.70486 -27.96867 -27.55230 -26.90891 -25.99740 -22.99587 -21.60781 -21.19602 -20.49594 -19.19232 -17.25781 -17.16385 -16.85499 -16.79212 -16.03582 -15.83870 -15.33133 -15.05412 -14.79116 -14.50657 -14.03522 -13.99777 -13.83558 -13.70219 -13.44986 -13.32873 -13.26375 -13.15760 -12.85027 -12.67150 -12.63021 -12.28335 -12.24455 -12.04435 -11.90752 -11.71488 -11.57382 -11.15652 -10.63838 -10.14816 -9.63891 -9.46055 -9.44207 -8.25171 -6.43551 0.43471 0.45369 1.41903 1.43297 1.51509 2.36514 2.75951 2.95368 3.12511 3.78763 3.84017 3.93751 4.03007 4.04720 4.23131 4.27488 4.34479 4.43642 4.47381 4.50461 4.57656 4.62301 4.68798 4.75101 4.79814 4.80474 4.85836 4.89190 5.03607 5.05773 5.11039 5.13717 5.29440 5.37398 5.40326 5.49929 5.66151 5.67266 5.73196 5.76979 5.98164 6.15779 6.30345 6.61288 7.29407 7.50072 8.79503 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024299 B = 0.003633 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.034285 B = 7704.676023 C = 8346.753391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C -0.135 4.135 4 C -0.088 4.088 5 C -0.112 4.112 6 C -0.143 4.143 7 C -0.078 4.078 8 C -0.061 4.061 9 C 0.033 3.967 10 N -0.482 5.482 11 C 0.017 3.983 12 C 0.218 3.782 13 O -0.583 6.583 14 C -0.565 4.565 15 H 0.063 0.937 16 C 0.028 3.972 17 N -0.917 5.917 18 Si 0.967 3.033 19 H -0.279 1.279 20 H -0.270 1.270 21 H -0.272 1.272 22 C 0.000 4.000 23 C -0.137 4.137 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.382 0.618 39 H 0.274 0.726 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 14.501 -4.596 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.088 4.088 5 C -0.169 4.169 6 C -0.161 4.161 7 C -0.078 4.078 8 C -0.099 4.099 9 C -0.096 4.096 10 N -0.204 5.204 11 C -0.112 4.112 12 C 0.177 3.823 13 O -0.394 6.394 14 C -0.603 4.603 15 H 0.081 0.919 16 C -0.172 4.172 17 N -0.558 5.558 18 Si 0.791 3.209 19 H -0.204 1.204 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.130 4.130 23 C -0.155 4.155 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.306 14.055 -5.148 20.705 hybrid contribution 1.915 0.394 1.075 2.231 sum -12.391 14.449 -4.073 19.466 Atomic orbital electron populations 1.20823 0.89223 1.03578 1.03125 1.20240 0.97518 0.92690 0.98306 1.21174 0.93365 0.98356 1.02354 1.20202 0.94480 0.95652 0.98512 1.20827 0.99850 0.93156 1.03062 1.21077 0.99830 0.92172 1.03030 1.19893 0.94275 0.94541 0.99140 1.20340 0.99570 0.93841 0.96176 1.22574 0.98783 0.91238 0.96973 1.68431 1.06706 1.20623 1.24641 1.24041 0.97331 0.98997 0.90841 1.20116 0.91539 0.80889 0.89720 1.86025 1.34346 1.35421 1.83589 1.21893 0.92878 1.45855 0.99664 0.91877 1.25810 0.99623 0.93394 0.98370 1.69505 1.15269 1.45831 1.25168 0.85481 0.77435 0.78834 0.79113 1.20442 1.19495 1.19695 1.24518 0.88456 0.99926 1.00066 1.21102 0.93226 0.98572 1.02559 0.90216 0.91169 0.90289 0.84034 0.90252 0.90095 0.91693 0.86679 0.92214 0.90477 0.90747 0.94882 0.90481 0.90640 0.76531 0.91651 0.92555 0.92613 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 71.24 0.71 -0.88 16 2 C -0.09 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.13 -2.71 9.36 22.27 0.21 -2.51 16 4 C -0.09 -1.97 5.88 -19.86 -0.12 -2.09 16 5 C -0.11 -1.86 10.01 71.24 0.71 -1.14 16 6 C -0.14 -3.80 9.36 22.27 0.21 -3.59 16 7 C -0.08 -2.16 5.13 -19.86 -0.10 -2.26 16 8 C -0.06 -1.90 5.66 29.85 0.17 -1.74 16 9 C 0.03 1.15 4.78 86.30 0.41 1.56 16 10 N -0.48 -20.47 6.16 -910.15 -5.61 -26.07 16 11 C 0.02 0.74 7.34 86.41 0.63 1.37 16 12 C 0.22 11.34 1.40 -10.89 -0.02 11.33 16 13 O -0.58 -32.55 13.48 -148.98 -2.01 -34.56 16 14 C -0.56 -30.68 8.61 25.60 0.22 -30.46 16 15 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 16 C 0.03 1.49 5.40 84.66 0.46 1.95 16 17 N -0.92 -49.89 11.20 21.45 0.24 -49.65 16 18 Si 0.97 41.83 29.54 68.60 2.03 43.85 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C 0.00 -0.01 7.37 86.37 0.64 0.63 16 23 C -0.14 -3.35 9.36 22.27 0.21 -3.15 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 26 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 30 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 32 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 33 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 34 H 0.07 2.42 8.08 -2.39 -0.02 2.40 16 35 H 0.03 1.20 7.39 -2.38 -0.02 1.18 16 36 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.08 3.14 7.88 -2.39 -0.02 3.12 16 38 H 0.38 21.69 6.60 -74.06 -0.49 21.21 16 39 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 40 H 0.06 2.68 7.44 -2.39 -0.02 2.66 16 41 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -59.81 345.98 -0.62 -60.42 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: 0.50 Total: 38.92 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 4.23 Total: -32.91 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -5.36 Total: -75.73 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -2.01 Total: -34.56 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -59.81 -0.62 -60.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349619463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.791 kcal (2) G-P(sol) polarization free energy of solvation -59.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds