Wall clock time and date at job start Mon Mar 30 2020 01:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 120.06761 * 2 1 4 4 C 1.38033 * 119.82636 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.82377 * 179.97438 * 4 3 2 6 6 C 1.38681 * 120.35113 * 0.04425 * 4 3 2 7 7 C 1.37833 * 119.84691 * 359.82857 * 6 4 3 8 8 C 1.38018 * 120.06157 * 180.02562 * 2 1 3 9 9 C 1.50619 * 121.85147 * 180.28890 * 7 6 4 10 10 N 1.46638 * 110.48315 * 342.49083 * 9 7 6 11 11 C 1.46898 * 110.99549 * 289.15306 * 10 9 7 12 12 C 1.53001 * 109.46893 * 292.96976 * 11 10 9 13 13 H 1.08999 * 109.47164 * 60.00204 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99938 * 12 11 10 15 15 C 1.50707 * 109.47316 * 180.02562 * 12 11 10 16 16 H 1.07995 * 119.99310 * 359.97438 * 15 12 11 17 17 C 1.37872 * 119.99931 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00169 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99871 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46985 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47121 * 210.00067 * 19 17 15 22 22 H 1.48504 * 109.47079 * 330.00105 * 19 17 15 23 23 C 1.47170 * 110.23766 * 52.55682 * 10 9 7 24 24 C 1.50714 * 118.48697 * 179.78036 * 6 4 3 25 25 H 1.08998 * 109.46821 * 269.98129 * 1 2 3 26 26 H 1.08998 * 109.46597 * 29.97676 * 1 2 3 27 27 H 1.08991 * 109.47277 * 149.97434 * 1 2 3 28 28 H 1.07997 * 120.08530 * 0.12983 * 3 2 1 29 29 H 1.09000 * 109.47091 * 270.05701 * 5 4 3 30 30 H 1.08997 * 109.47215 * 30.05374 * 5 4 3 31 31 H 1.08995 * 109.46946 * 150.05308 * 5 4 3 32 32 H 1.08000 * 119.81135 * 359.97438 * 8 2 1 33 33 H 1.08998 * 109.30192 * 222.18260 * 9 7 6 34 34 H 1.09005 * 109.30458 * 102.80135 * 9 7 6 35 35 H 1.08999 * 109.47049 * 172.97109 * 11 10 9 36 36 H 1.08997 * 109.47646 * 52.97159 * 11 10 9 37 37 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 38 38 H 0.96998 * 119.99752 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.62635 * 48.42233 * 23 10 9 40 40 H 1.08997 * 109.62924 * 168.81176 * 23 10 9 41 41 H 1.09006 * 109.38522 * 43.12017 * 24 6 4 42 42 H 1.08995 * 109.30911 * 283.37178 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1965 0.0000 4 6 3.5801 1.1907 -0.0005 5 6 4.3351 2.4950 -0.0011 6 6 4.2758 -0.0090 -0.0020 7 6 3.5857 -1.2021 0.0007 8 6 2.1984 -1.1945 -0.0005 9 6 4.2953 -2.5307 0.0057 10 7 5.6932 -2.3674 -0.4062 11 6 5.7867 -2.0538 -1.8382 12 6 5.3273 -3.2625 -2.6561 13 1 4.2942 -3.5009 -2.4031 14 8 6.1616 -4.3839 -2.3585 15 6 5.4239 -2.9410 -4.1253 16 1 5.7772 -1.9714 -4.4437 17 6 5.0612 -3.8847 -5.0627 18 7 4.6315 -5.0656 -4.6748 19 14 5.1803 -3.4860 -6.8838 20 1 6.5252 -3.8650 -7.3866 21 1 4.1422 -4.2457 -7.6258 22 1 4.9680 -2.0303 -7.0867 23 6 6.3447 -1.3267 0.4053 24 6 5.7823 0.0337 -0.0076 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6623 2.1332 0.0021 29 1 4.5158 2.8097 -1.0289 30 1 3.7475 3.2552 0.5136 31 1 5.2879 2.3634 0.5115 32 1 1.6564 -2.1286 -0.0005 33 1 3.7936 -3.2097 -0.6838 34 1 4.2626 -2.9529 1.0101 35 1 6.8198 -1.8153 -2.0912 36 1 5.1505 -1.1984 -2.0652 37 1 7.0969 -4.2425 -2.5591 38 1 4.3760 -5.7293 -5.3344 39 1 6.1386 -1.5031 1.4610 40 1 7.4208 -1.3488 0.2336 41 1 6.1253 0.7949 0.6933 42 1 6.1322 0.2808 -1.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354635272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:19 Heat of formation + Delta-G solvation = -33.950177 kcal Electronic energy + Delta-G solvation = -21934.115805 eV Core-core repulsion = 18878.169846 eV Total energy + Delta-G solvation = -3055.945959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37347 -37.53327 -35.20269 -33.95906 -32.04935 -31.74396 -30.45900 -28.33287 -27.50998 -26.19532 -25.34829 -23.53733 -22.05280 -21.04366 -20.27930 -18.44705 -16.92282 -16.07244 -15.61729 -15.27853 -14.68119 -14.53425 -14.31091 -14.06776 -13.78808 -13.59731 -13.21872 -13.08949 -12.90992 -12.64996 -12.41355 -12.40512 -12.07798 -11.89845 -11.56754 -11.21077 -11.08406 -10.93002 -10.89831 -10.82941 -10.70376 -10.47553 -10.28048 -9.99317 -8.92555 -8.53579 -8.31087 -8.16150 -8.05183 -7.61700 -5.96547 -4.14254 1.53562 1.57226 3.29430 3.36295 3.39105 3.85784 4.36954 4.57305 4.83350 4.87730 5.00355 5.10219 5.24879 5.28954 5.31341 5.40094 5.49049 5.55577 5.60994 5.62687 5.72125 5.79900 5.84776 5.89888 5.91918 6.03526 6.12972 6.15670 6.30348 6.33201 6.35667 6.47010 6.61300 6.67336 6.76001 6.86304 6.93404 7.24512 7.55635 7.65153 7.82379 7.92934 8.25427 8.89448 9.50895 9.67486 11.07667 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.005544 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.639890 B = 5049.037161 C = 5509.916560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.086 4.086 5 C -0.114 4.114 6 C -0.080 4.080 7 C -0.091 4.091 8 C -0.118 4.118 9 C 0.088 3.912 10 N -0.514 5.514 11 C 0.027 3.973 12 C 0.238 3.762 13 H 0.053 0.947 14 O -0.555 6.555 15 C -0.572 4.572 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.050 3.950 24 C -0.117 4.117 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.342 0.658 38 H 0.260 0.740 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 12.091 11.375 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.171 4.171 6 C -0.081 4.081 7 C -0.093 4.093 8 C -0.137 4.137 9 C -0.041 4.041 10 N -0.234 5.234 11 C -0.101 4.101 12 C 0.180 3.820 13 H 0.071 0.929 14 O -0.357 6.357 15 C -0.610 4.610 16 H 0.071 0.929 17 C -0.126 4.126 18 N -0.495 5.495 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.078 4.078 24 C -0.155 4.155 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.225 11.175 11.589 16.419 hybrid contribution -0.017 1.398 -1.509 2.058 sum -3.242 12.573 10.080 16.438 Atomic orbital electron populations 1.20749 0.91490 1.02656 1.01862 1.19776 0.95767 0.93181 1.00157 1.20723 0.93342 0.97251 1.03306 1.19759 0.93666 0.94655 1.00499 1.20817 0.99981 0.94058 1.02204 1.19342 0.95307 0.91981 1.01427 1.20518 0.94096 0.96452 0.98229 1.20958 0.93528 0.97574 1.01614 1.21211 0.88530 0.92527 1.01814 1.62683 1.13028 1.42674 1.05059 1.23116 1.00450 1.00550 0.85949 1.19312 0.90983 0.81007 0.90721 0.92921 1.86554 1.19549 1.41701 1.87851 1.21644 1.47218 1.00204 0.91945 0.92885 1.25005 0.94013 0.94852 0.98696 1.70081 1.41379 1.04464 1.33547 0.86713 0.77890 0.78424 0.85579 1.20494 1.21121 1.19943 1.22242 0.99088 0.88571 0.97916 1.21152 0.91828 1.00031 1.02495 0.91558 0.91883 0.91496 0.86652 0.91311 0.92012 0.91373 0.86139 0.88506 0.90177 0.92059 0.94775 0.81493 0.93052 0.91286 0.90537 0.90786 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.02 36.01 0.36 -0.85 16 2 C -0.09 -1.24 5.87 -104.69 -0.62 -1.86 16 3 C -0.13 -1.75 9.35 -39.65 -0.37 -2.12 16 4 C -0.09 -1.21 5.88 -104.53 -0.62 -1.83 16 5 C -0.11 -1.26 9.55 36.01 0.34 -0.91 16 6 C -0.08 -1.26 5.05 -104.60 -0.53 -1.78 16 7 C -0.09 -1.52 5.19 -104.63 -0.54 -2.07 16 8 C -0.12 -1.84 9.31 -39.48 -0.37 -2.21 16 9 C 0.09 1.55 5.43 -5.16 -0.03 1.52 16 10 N -0.51 -9.45 4.88 -236.19 -1.15 -10.61 16 11 C 0.03 0.56 3.52 -3.82 -0.01 0.55 16 12 C 0.24 6.10 2.74 -27.88 -0.08 6.02 16 13 H 0.05 1.49 6.39 -51.93 -0.33 1.16 16 14 O -0.55 -14.62 12.59 -35.23 -0.44 -15.07 16 15 C -0.57 -15.93 8.76 -34.44 -0.30 -16.23 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 17 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 18 N -0.86 -25.68 12.84 55.43 0.71 -24.97 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.05 0.75 6.02 -3.73 -0.02 0.73 16 24 C -0.12 -1.64 4.45 -27.93 -0.12 -1.77 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.69 6.04 -51.93 -0.31 0.37 16 32 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 1.94 6.09 -51.93 -0.32 1.62 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 36 H 0.03 0.74 5.91 -51.93 -0.31 0.44 16 37 H 0.34 8.12 9.04 45.56 0.41 8.53 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 42 H 0.08 1.18 7.06 -51.93 -0.37 0.81 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -31.31 329.77 -9.67 -40.97 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.73 Total: 8.89 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -3.00 Total: -20.63 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: -0.44 Total: -35.58 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.44 Total: -15.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.31 -9.67 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354635272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.023 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds