Wall clock time and date at job start Mon Mar 30 2020 01:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 120.06761 * 2 1 4 4 C 1.38033 * 119.82636 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.82377 * 179.97438 * 4 3 2 6 6 C 1.38681 * 120.35113 * 0.04425 * 4 3 2 7 7 C 1.37833 * 119.84691 * 359.82857 * 6 4 3 8 8 C 1.38018 * 120.06157 * 180.02562 * 2 1 3 9 9 C 1.50619 * 121.85147 * 180.28890 * 7 6 4 10 10 N 1.46638 * 110.48315 * 342.49083 * 9 7 6 11 11 C 1.46898 * 110.99549 * 289.15306 * 10 9 7 12 12 C 1.53001 * 109.46893 * 292.96976 * 11 10 9 13 13 H 1.08999 * 109.47164 * 60.00204 * 12 11 10 14 14 O 1.42903 * 109.47171 * 299.99938 * 12 11 10 15 15 C 1.50707 * 109.47316 * 180.02562 * 12 11 10 16 16 H 1.07995 * 119.99310 * 359.97438 * 15 12 11 17 17 C 1.37872 * 119.99931 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00169 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99871 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46985 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47121 * 210.00067 * 19 17 15 22 22 H 1.48504 * 109.47079 * 330.00105 * 19 17 15 23 23 C 1.47170 * 110.23766 * 52.55682 * 10 9 7 24 24 C 1.50714 * 118.48697 * 179.78036 * 6 4 3 25 25 H 1.08998 * 109.46821 * 269.98129 * 1 2 3 26 26 H 1.08998 * 109.46597 * 29.97676 * 1 2 3 27 27 H 1.08991 * 109.47277 * 149.97434 * 1 2 3 28 28 H 1.07997 * 120.08530 * 0.12983 * 3 2 1 29 29 H 1.09000 * 109.47091 * 270.05701 * 5 4 3 30 30 H 1.08997 * 109.47215 * 30.05374 * 5 4 3 31 31 H 1.08995 * 109.46946 * 150.05308 * 5 4 3 32 32 H 1.08000 * 119.81135 * 359.97438 * 8 2 1 33 33 H 1.08998 * 109.30192 * 222.18260 * 9 7 6 34 34 H 1.09005 * 109.30458 * 102.80135 * 9 7 6 35 35 H 1.08999 * 109.47049 * 172.97109 * 11 10 9 36 36 H 1.08997 * 109.47646 * 52.97159 * 11 10 9 37 37 H 0.96700 * 114.00311 * 300.00378 * 14 12 11 38 38 H 0.96998 * 119.99752 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.62635 * 48.42233 * 23 10 9 40 40 H 1.08997 * 109.62924 * 168.81176 * 23 10 9 41 41 H 1.09006 * 109.38522 * 43.12017 * 24 6 4 42 42 H 1.08995 * 109.30911 * 283.37178 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1965 0.0000 4 6 3.5801 1.1907 -0.0005 5 6 4.3351 2.4950 -0.0011 6 6 4.2758 -0.0090 -0.0020 7 6 3.5857 -1.2021 0.0007 8 6 2.1984 -1.1945 -0.0005 9 6 4.2953 -2.5307 0.0057 10 7 5.6932 -2.3674 -0.4062 11 6 5.7867 -2.0538 -1.8382 12 6 5.3273 -3.2625 -2.6561 13 1 4.2942 -3.5009 -2.4031 14 8 6.1616 -4.3839 -2.3585 15 6 5.4239 -2.9410 -4.1253 16 1 5.7772 -1.9714 -4.4437 17 6 5.0612 -3.8847 -5.0627 18 7 4.6315 -5.0656 -4.6748 19 14 5.1803 -3.4860 -6.8838 20 1 6.5252 -3.8650 -7.3866 21 1 4.1422 -4.2457 -7.6258 22 1 4.9680 -2.0303 -7.0867 23 6 6.3447 -1.3267 0.4053 24 6 5.7823 0.0337 -0.0076 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3633 -0.8897 -0.5142 28 1 1.6623 2.1332 0.0021 29 1 4.5158 2.8097 -1.0289 30 1 3.7475 3.2552 0.5136 31 1 5.2879 2.3634 0.5115 32 1 1.6564 -2.1286 -0.0005 33 1 3.7936 -3.2097 -0.6838 34 1 4.2626 -2.9529 1.0101 35 1 6.8198 -1.8153 -2.0912 36 1 5.1505 -1.1984 -2.0652 37 1 7.0969 -4.2425 -2.5591 38 1 4.3760 -5.7293 -5.3344 39 1 6.1386 -1.5031 1.4610 40 1 7.4208 -1.3488 0.2336 41 1 6.1253 0.7949 0.6933 42 1 6.1322 0.2808 -1.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354635272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:18 Heat of formation + Delta-G solvation = -54.860193 kcal Electronic energy + Delta-G solvation = -21935.022531 eV Core-core repulsion = 18878.169846 eV Total energy + Delta-G solvation = -3056.852685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58153 -38.91925 -37.06571 -35.06409 -34.22220 -32.96097 -31.73549 -30.10295 -28.48860 -27.27114 -27.17551 -24.99066 -23.36064 -22.65130 -21.46815 -19.85929 -18.93770 -17.27376 -16.89755 -16.73566 -16.59974 -16.16965 -15.78312 -15.41026 -15.30264 -14.90778 -14.40616 -14.25824 -14.15691 -13.93481 -13.78906 -13.53958 -13.23756 -13.03532 -12.95101 -12.85759 -12.82582 -12.70810 -12.31066 -12.21540 -12.04186 -11.93331 -11.77969 -11.51533 -10.95386 -10.69892 -10.08898 -9.45776 -9.26737 -9.10157 -8.13489 -6.39316 0.42018 0.42912 1.38441 1.39037 1.49763 2.37403 2.73515 3.10393 3.14490 3.75397 3.79850 3.92278 4.02823 4.11132 4.22202 4.27476 4.36954 4.40688 4.47543 4.57528 4.61690 4.66396 4.71126 4.76589 4.78123 4.82152 4.88174 4.93775 4.99960 5.05508 5.07115 5.11272 5.28714 5.38518 5.52968 5.61705 5.66294 5.74157 5.76353 6.03210 6.15726 6.21866 6.27302 6.73901 7.34685 7.63722 8.91115 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.005544 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.639890 B = 5049.037161 C = 5509.916560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.133 4.133 4 C -0.091 4.091 5 C -0.112 4.112 6 C -0.099 4.099 7 C -0.113 4.113 8 C -0.142 4.142 9 C 0.093 3.907 10 N -0.526 5.526 11 C 0.053 3.947 12 C 0.239 3.761 13 H 0.016 0.984 14 O -0.570 6.570 15 C -0.587 4.587 16 H 0.055 0.945 17 C 0.027 3.973 18 N -0.899 5.899 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.050 3.950 24 C -0.110 4.110 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.143 0.857 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.352 0.648 38 H 0.261 0.739 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 14.670 11.587 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.168 4.168 6 C -0.100 4.100 7 C -0.115 4.115 8 C -0.161 4.161 9 C -0.035 4.035 10 N -0.247 5.247 11 C -0.075 4.075 12 C 0.181 3.819 13 H 0.033 0.967 14 O -0.373 6.373 15 C -0.625 4.625 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.536 5.536 19 Si 0.782 3.218 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.078 4.078 24 C -0.148 4.148 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.197 0.803 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.876 13.770 11.815 18.371 hybrid contribution -0.163 0.592 -1.503 1.624 sum -3.039 14.362 10.312 17.940 Atomic orbital electron populations 1.20796 0.89345 1.03269 1.03129 1.20156 0.97477 0.92753 0.99004 1.21124 0.93542 0.98119 1.02305 1.20180 0.94258 0.95452 0.99248 1.20867 1.00417 0.92752 1.02754 1.19598 0.96255 0.92134 1.01967 1.20493 0.94670 0.96256 1.00086 1.21117 0.93544 0.98496 1.02902 1.21035 0.88234 0.92985 1.01259 1.62598 1.13662 1.44600 1.03867 1.22610 1.00079 0.97548 0.87271 1.19144 0.89391 0.82441 0.90896 0.96663 1.86497 1.20388 1.42502 1.87941 1.22023 1.46902 1.00283 0.93324 0.92648 1.25879 0.93492 0.94591 1.03605 1.70224 1.42574 1.05615 1.35199 0.85593 0.78202 0.78414 0.79580 1.19451 1.20801 1.19170 1.22358 0.99445 0.88039 0.97919 1.21110 0.90867 1.00149 1.02636 0.89869 0.90311 0.91837 0.83934 0.91097 0.89979 0.90337 0.86454 0.92190 0.89013 0.91355 0.95811 0.80338 0.92998 0.89905 0.89193 0.87831 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 10.02 71.24 0.71 -1.49 16 2 C -0.09 -2.55 5.87 -19.91 -0.12 -2.67 16 3 C -0.13 -3.35 9.35 22.23 0.21 -3.14 16 4 C -0.09 -2.40 5.88 -19.81 -0.12 -2.51 16 5 C -0.11 -2.09 9.55 71.24 0.68 -1.41 16 6 C -0.10 -3.01 5.05 -19.85 -0.10 -3.11 16 7 C -0.11 -3.86 5.19 -19.87 -0.10 -3.97 16 8 C -0.14 -4.55 9.31 22.34 0.21 -4.34 16 9 C 0.09 3.45 5.43 85.58 0.46 3.92 16 10 N -0.53 -19.58 4.88 -901.16 -4.40 -23.98 16 11 C 0.05 2.26 3.52 86.30 0.30 2.57 16 12 C 0.24 12.73 2.74 29.85 0.08 12.82 16 13 H 0.02 0.94 6.39 -2.39 -0.02 0.92 16 14 O -0.57 -31.00 12.59 -148.98 -1.88 -32.87 16 15 C -0.59 -33.29 8.76 25.60 0.22 -33.07 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.03 1.53 5.40 84.65 0.46 1.99 16 18 N -0.90 -55.11 12.84 21.45 0.28 -54.84 16 19 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 23 C 0.05 1.42 6.02 86.22 0.52 1.93 16 24 C -0.11 -2.89 4.45 29.82 0.13 -2.75 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 27 H 0.06 1.32 8.09 -2.39 -0.02 1.30 16 28 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.08 1.30 6.04 -2.39 -0.01 1.28 16 32 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.06 2.62 6.09 -2.39 -0.01 2.61 16 34 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 35 H 0.07 2.79 8.08 -2.39 -0.02 2.77 16 36 H 0.02 1.06 5.91 -2.39 -0.01 1.04 16 37 H 0.35 17.07 9.04 -74.06 -0.67 16.40 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.08 2.12 8.05 -2.39 -0.02 2.10 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.10 2.09 6.42 -2.38 -0.02 2.08 16 42 H 0.07 1.94 7.06 -2.39 -0.02 1.92 16 Total: -1.00 -68.56 329.77 -0.07 -68.63 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.35 Total: 32.00 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.56 Total: -35.24 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -4.13 Total: -78.82 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.88 Total: -32.87 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.56 -0.07 -68.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354635272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.771 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds