Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99964 * 2 1 4 4 C 1.38211 * 119.99774 * 180.21331 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 C 1.50702 * 120.00325 * 180.25725 * 5 4 3 7 7 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 8 8 C 1.50700 * 120.00244 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46803 * 324.99456 * 8 7 5 10 10 C 1.52998 * 109.47390 * 84.99352 * 8 7 5 11 11 N 1.46500 * 109.47118 * 204.99724 * 8 7 5 12 12 C 1.34777 * 120.00047 * 154.99696 * 11 8 7 13 13 O 1.21281 * 120.00234 * 359.97438 * 12 11 8 14 14 C 1.50700 * 119.99978 * 180.02562 * 12 11 8 15 15 C 1.52993 * 109.47302 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47302 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99815 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00225 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99922 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46867 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47100 * 120.00088 * 20 18 16 23 23 H 1.48496 * 109.46939 * 240.00013 * 20 18 16 24 24 C 1.38211 * 119.99823 * 179.77787 * 2 1 3 25 25 H 1.09001 * 109.47235 * 270.21618 * 1 2 3 26 26 H 1.08998 * 109.46741 * 30.21621 * 1 2 3 27 27 H 1.09000 * 109.47220 * 150.21894 * 1 2 3 28 28 H 1.07998 * 119.99848 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 30 30 H 1.09002 * 109.46776 * 89.99934 * 6 5 4 31 31 H 1.08993 * 109.47429 * 210.00606 * 6 5 4 32 32 H 1.08998 * 109.46961 * 330.00857 * 6 5 4 33 33 H 1.08996 * 109.47164 * 179.97438 * 10 8 7 34 34 H 1.08994 * 109.47243 * 300.00266 * 10 8 7 35 35 H 1.09002 * 109.47062 * 60.00262 * 10 8 7 36 36 H 0.96998 * 119.99813 * 335.00347 * 11 8 7 37 37 H 1.09002 * 109.47031 * 300.00182 * 14 12 11 38 38 H 1.09005 * 109.47166 * 60.00244 * 14 12 11 39 39 H 1.09002 * 109.47283 * 300.00097 * 15 14 12 40 40 H 1.08998 * 109.47096 * 59.99960 * 15 14 12 41 41 H 0.97009 * 120.00152 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.00392 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0045 5 6 4.2717 0.0000 0.0011 6 6 5.7787 -0.0001 0.0021 7 6 3.5807 -1.1970 0.0051 8 6 4.3342 -2.5021 0.0105 9 1 5.2452 -2.3981 -0.5787 10 6 4.6971 -2.8755 1.4492 11 7 3.4946 -3.5531 -0.5698 12 6 4.0646 -4.6374 -1.1319 13 8 5.2725 -4.7428 -1.1578 14 6 3.2010 -5.7182 -1.7294 15 6 4.0903 -6.8264 -2.2967 16 6 3.2267 -7.9075 -2.8936 17 1 2.1510 -7.8134 -2.8710 18 6 3.8098 -9.0162 -3.4695 19 7 5.1197 -9.1306 -3.4974 20 14 2.7393 -10.3568 -4.2088 21 1 1.3087 -9.9916 -4.0498 22 1 3.0550 -10.5025 -5.6525 23 1 3.0032 -11.6414 -3.5122 24 6 2.1981 -1.1970 0.0046 25 1 -0.3634 0.0039 1.0277 26 1 -0.3633 0.8880 -0.5172 27 1 -0.3634 -0.8919 -0.5104 28 1 1.6583 2.1326 0.0004 29 1 4.1205 2.1326 -0.0076 30 1 6.1413 0.0043 1.0300 31 1 6.1424 -0.8921 -0.5078 32 1 6.1424 0.8877 -0.5151 33 1 5.2417 -3.8197 1.4531 34 1 5.3218 -2.0936 1.8809 35 1 3.7861 -2.9795 2.0384 36 1 2.5285 -3.4686 -0.5496 37 1 2.5514 -6.1322 -0.9581 38 1 2.5922 -5.2963 -2.5292 39 1 4.7395 -6.4121 -3.0681 40 1 4.6994 -7.2483 -1.4973 41 1 5.5299 -9.9105 -3.9029 42 1 1.6581 -2.1323 0.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458441678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = -38.829158 kcal Electronic energy + Delta-G solvation = -20709.192700 eV Core-core repulsion = 17653.035172 eV Total energy + Delta-G solvation = -3056.157527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.32720 -38.86827 -35.63160 -33.95906 -33.42393 -31.57473 -30.63642 -29.53945 -29.28778 -25.75033 -25.10161 -23.94413 -22.43798 -21.09056 -20.20204 -19.38211 -17.00718 -16.52872 -16.04705 -15.50446 -15.20779 -14.91308 -14.55683 -14.35952 -14.34877 -13.64697 -13.45160 -13.41041 -13.00175 -12.94042 -12.71947 -12.28511 -12.18803 -12.08963 -12.00842 -11.67040 -11.57133 -11.14782 -11.12525 -10.93277 -10.68181 -10.55865 -9.93820 -9.64378 -9.15966 -9.04424 -8.93938 -8.79686 -8.53193 -8.30567 -5.94562 -3.98771 1.14879 1.20218 3.28154 3.33640 3.40340 3.43545 3.48321 3.60759 4.45886 4.49003 4.59320 4.66623 4.80290 4.96546 5.18626 5.24701 5.31737 5.35331 5.37518 5.40443 5.44551 5.47386 5.54753 5.63182 5.72820 5.79104 5.87576 5.97979 6.02907 6.21861 6.24502 6.26308 6.28771 6.40377 6.45561 6.82368 6.84032 6.92037 7.76604 7.88699 7.91000 8.09167 8.40750 8.80995 9.10113 9.64712 11.16397 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.003404 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.866226 B = 8223.396108 C = 8961.785166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.082 4.082 6 C -0.122 4.122 7 C -0.080 4.080 8 C 0.179 3.821 9 H 0.099 0.901 10 C -0.156 4.156 11 N -0.740 5.740 12 C 0.511 3.489 13 O -0.534 6.534 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.113 4.113 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.260 0.740 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 22.144 9.805 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.082 4.082 6 C -0.178 4.178 7 C -0.081 4.081 8 C 0.074 3.926 9 H 0.116 0.884 10 C -0.214 4.214 11 N -0.396 5.396 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.131 4.131 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.590 21.923 9.716 24.622 hybrid contribution -1.059 -0.650 -0.392 1.303 sum -6.648 21.273 9.323 24.159 Atomic orbital electron populations 1.20796 0.91149 1.02899 1.02287 1.19863 0.96058 0.92999 0.99889 1.20989 0.94151 0.97422 1.01440 1.20978 0.94131 0.97295 1.00757 1.19677 0.96141 0.92288 1.00124 1.20911 0.91115 1.03288 1.02527 1.19854 0.93760 0.94331 1.00145 1.19750 0.94083 0.83602 0.95190 0.88363 1.22130 1.01761 1.02412 0.95130 1.46438 1.09867 1.21453 1.61843 1.21562 0.89706 0.82287 0.76452 1.90659 1.15250 1.77953 1.57064 1.21872 0.99470 0.95426 1.00272 1.18899 0.94061 0.90624 0.96484 1.21265 0.92996 1.04290 1.37877 0.92572 1.25028 0.94912 0.98291 0.96195 1.70012 1.08988 1.29125 1.44706 0.86540 0.80628 0.81926 0.78892 1.19756 1.21029 1.21029 1.20777 0.93406 0.97605 1.01302 0.91221 0.91612 0.91352 0.86215 0.86033 0.90938 0.90763 0.91511 0.91316 0.91874 0.92506 0.76922 0.90272 0.90289 0.95809 0.95804 0.93030 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 4 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 5 C -0.08 -0.87 5.88 -104.62 -0.62 -1.49 16 6 C -0.12 -1.12 9.38 36.01 0.34 -0.79 16 7 C -0.08 -0.94 5.06 -104.62 -0.53 -1.47 16 8 C 0.18 2.40 2.29 -69.08 -0.16 2.24 16 9 H 0.10 1.49 5.60 -51.93 -0.29 1.20 16 10 C -0.16 -1.94 9.47 37.16 0.35 -1.59 16 11 N -0.74 -10.90 5.00 -54.93 -0.27 -11.18 16 12 C 0.51 9.99 7.79 -10.99 -0.09 9.90 16 13 O -0.53 -12.61 15.64 5.56 0.09 -12.52 16 14 C -0.13 -2.69 5.64 -27.89 -0.16 -2.84 16 15 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 16 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 20 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.11 -1.21 8.89 -39.58 -0.35 -1.56 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.77 6.03 -51.93 -0.31 0.46 16 32 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.39 4.76 6.21 -40.82 -0.25 4.51 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.12 1.15 6.08 -52.49 -0.32 0.84 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -34.02 346.61 -8.62 -42.64 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.61 Total: 1.32 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.76 Total: -15.39 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.46 Total: -38.05 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.02 -8.62 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458441678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.813 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds