Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99964 * 2 1 4 4 C 1.38211 * 119.99774 * 180.21331 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.52161 * 4 3 2 6 6 C 1.50702 * 120.00325 * 180.25725 * 5 4 3 7 7 C 1.38215 * 120.00141 * 0.28711 * 5 4 3 8 8 C 1.50700 * 120.00244 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46803 * 324.99456 * 8 7 5 10 10 C 1.52998 * 109.47390 * 84.99352 * 8 7 5 11 11 N 1.46500 * 109.47118 * 204.99724 * 8 7 5 12 12 C 1.34777 * 120.00047 * 154.99696 * 11 8 7 13 13 O 1.21281 * 120.00234 * 359.97438 * 12 11 8 14 14 C 1.50700 * 119.99978 * 180.02562 * 12 11 8 15 15 C 1.52993 * 109.47302 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47302 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99815 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00225 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99922 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46867 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47100 * 120.00088 * 20 18 16 23 23 H 1.48496 * 109.46939 * 240.00013 * 20 18 16 24 24 C 1.38211 * 119.99823 * 179.77787 * 2 1 3 25 25 H 1.09001 * 109.47235 * 270.21618 * 1 2 3 26 26 H 1.08998 * 109.46741 * 30.21621 * 1 2 3 27 27 H 1.09000 * 109.47220 * 150.21894 * 1 2 3 28 28 H 1.07998 * 119.99848 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.00200 * 179.80765 * 4 3 2 30 30 H 1.09002 * 109.46776 * 89.99934 * 6 5 4 31 31 H 1.08993 * 109.47429 * 210.00606 * 6 5 4 32 32 H 1.08998 * 109.46961 * 330.00857 * 6 5 4 33 33 H 1.08996 * 109.47164 * 179.97438 * 10 8 7 34 34 H 1.08994 * 109.47243 * 300.00266 * 10 8 7 35 35 H 1.09002 * 109.47062 * 60.00262 * 10 8 7 36 36 H 0.96998 * 119.99813 * 335.00347 * 11 8 7 37 37 H 1.09002 * 109.47031 * 300.00182 * 14 12 11 38 38 H 1.09005 * 109.47166 * 60.00244 * 14 12 11 39 39 H 1.09002 * 109.47283 * 300.00097 * 15 14 12 40 40 H 1.08998 * 109.47096 * 59.99960 * 15 14 12 41 41 H 0.97009 * 120.00152 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.00392 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0045 5 6 4.2717 0.0000 0.0011 6 6 5.7787 -0.0001 0.0021 7 6 3.5807 -1.1970 0.0051 8 6 4.3342 -2.5021 0.0105 9 1 5.2452 -2.3981 -0.5787 10 6 4.6971 -2.8755 1.4492 11 7 3.4946 -3.5531 -0.5698 12 6 4.0646 -4.6374 -1.1319 13 8 5.2725 -4.7428 -1.1578 14 6 3.2010 -5.7182 -1.7294 15 6 4.0903 -6.8264 -2.2967 16 6 3.2267 -7.9075 -2.8936 17 1 2.1510 -7.8134 -2.8710 18 6 3.8098 -9.0162 -3.4695 19 7 5.1197 -9.1306 -3.4974 20 14 2.7393 -10.3568 -4.2088 21 1 1.3087 -9.9916 -4.0498 22 1 3.0550 -10.5025 -5.6525 23 1 3.0032 -11.6414 -3.5122 24 6 2.1981 -1.1970 0.0046 25 1 -0.3634 0.0039 1.0277 26 1 -0.3633 0.8880 -0.5172 27 1 -0.3634 -0.8919 -0.5104 28 1 1.6583 2.1326 0.0004 29 1 4.1205 2.1326 -0.0076 30 1 6.1413 0.0043 1.0300 31 1 6.1424 -0.8921 -0.5078 32 1 6.1424 0.8877 -0.5151 33 1 5.2417 -3.8197 1.4531 34 1 5.3218 -2.0936 1.8809 35 1 3.7861 -2.9795 2.0384 36 1 2.5285 -3.4686 -0.5496 37 1 2.5514 -6.1322 -0.9581 38 1 2.5922 -5.2963 -2.5292 39 1 4.7395 -6.4121 -3.0681 40 1 4.6994 -7.2483 -1.4973 41 1 5.5299 -9.9105 -3.9029 42 1 1.6581 -2.1323 0.0078 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458441678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = -59.280977 kcal Electronic energy + Delta-G solvation = -20710.079557 eV Core-core repulsion = 17653.035172 eV Total energy + Delta-G solvation = -3057.044385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35917 -40.17605 -36.80704 -35.54346 -34.79772 -33.21987 -32.07782 -30.41094 -30.10154 -27.71625 -25.82346 -24.99739 -23.89389 -22.45010 -21.29034 -20.69795 -18.83772 -17.68458 -17.55912 -16.53705 -16.47572 -16.46431 -16.10999 -15.46571 -15.23450 -14.91054 -14.51993 -14.36059 -14.20103 -14.08762 -13.74803 -13.63999 -13.39099 -13.23085 -13.12381 -12.84792 -12.73958 -12.60448 -12.44506 -12.32185 -11.93275 -11.88086 -11.65530 -11.55277 -11.28243 -10.74475 -10.57974 -10.19377 -9.71031 -9.29850 -8.17916 -6.31959 0.38013 0.44971 1.42297 1.43828 1.57144 1.70563 2.20856 2.44597 2.78136 3.15103 3.54236 3.85311 3.96655 4.01998 4.12602 4.19144 4.27213 4.38626 4.49035 4.50472 4.55158 4.66419 4.69214 4.76796 4.82504 4.87183 4.88823 4.93554 5.07842 5.11503 5.12567 5.23353 5.34720 5.42451 5.49703 5.56843 5.63157 5.69384 5.75015 5.85656 6.10907 6.17808 6.57036 6.86539 7.32303 7.38385 8.94961 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025803 B = 0.003404 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.866226 B = 8223.396108 C = 8961.785166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.097 4.097 8 C 0.179 3.821 9 H 0.076 0.924 10 C -0.150 4.150 11 N -0.717 5.717 12 C 0.513 3.487 13 O -0.585 6.585 14 C -0.120 4.120 15 C 0.042 3.958 16 C -0.542 4.542 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.280 1.280 24 C -0.125 4.125 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.411 0.589 37 H 0.105 0.895 38 H 0.103 0.897 39 H -0.018 1.018 40 H -0.017 1.017 41 H 0.263 0.737 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 23.639 10.166 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.095 4.095 6 C -0.178 4.178 7 C -0.097 4.097 8 C 0.075 3.925 9 H 0.094 0.906 10 C -0.208 4.208 11 N -0.372 5.372 12 C 0.302 3.698 13 O -0.464 6.464 14 C -0.160 4.160 15 C 0.005 3.995 16 C -0.580 4.580 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.176 1.176 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.143 4.143 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.250 0.750 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.000 1.000 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.631 23.465 10.102 26.966 hybrid contribution -0.120 -1.000 -0.473 1.113 sum -8.751 22.465 9.629 25.961 Atomic orbital electron populations 1.20841 0.89431 1.03634 1.03125 1.20178 0.97409 0.92710 0.99115 1.21354 0.94234 0.98338 1.00189 1.21267 0.94595 0.97607 0.99998 1.19878 0.96748 0.92508 1.00351 1.20921 0.90637 1.03070 1.03158 1.19715 0.94251 0.93441 1.02312 1.19771 0.93380 0.84204 0.95144 0.90603 1.22064 1.02305 1.01605 0.94811 1.46171 1.10909 1.20159 1.59961 1.21335 0.88756 0.83185 0.76545 1.90646 1.17266 1.79178 1.59352 1.21650 0.98635 0.94048 1.01631 1.18685 0.94113 0.92539 0.94180 1.21742 0.94029 1.04621 1.37613 0.90605 1.26147 0.96332 1.01383 0.96645 1.70189 1.11461 1.30219 1.45895 0.85262 0.79289 0.77959 0.77658 1.17587 1.20635 1.20600 1.20936 0.93024 0.98653 1.01699 0.90249 0.90410 0.91145 0.83830 0.83882 0.89889 0.92651 0.90024 0.94019 0.90029 0.91241 0.74994 0.87699 0.87922 0.99961 0.99846 0.92865 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 2 C -0.09 -1.57 5.88 -19.86 -0.12 -1.69 16 3 C -0.12 -1.90 9.70 22.27 0.22 -1.68 16 4 C -0.12 -1.93 9.70 22.27 0.22 -1.71 16 5 C -0.09 -1.90 5.88 -19.86 -0.12 -2.01 16 6 C -0.12 -2.17 9.38 71.24 0.67 -1.50 16 7 C -0.10 -2.17 5.06 -19.86 -0.10 -2.27 16 8 C 0.18 4.86 2.29 44.24 0.10 4.96 16 9 H 0.08 2.43 5.60 -2.39 -0.01 2.42 16 10 C -0.15 -3.73 9.47 71.98 0.68 -3.05 16 11 N -0.72 -20.94 5.00 -446.09 -2.23 -23.17 16 12 C 0.51 20.55 7.79 87.66 0.68 21.23 16 13 O -0.58 -29.29 15.64 -3.03 -0.05 -29.33 16 14 C -0.12 -4.93 5.64 29.85 0.17 -4.77 16 15 C 0.04 2.41 4.26 29.85 0.13 2.53 16 16 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 17 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.46 5.46 84.65 0.46 0.01 16 19 N -0.94 -60.06 13.29 21.45 0.28 -59.77 16 20 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 21 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 24 C -0.12 -2.45 8.89 22.27 0.20 -2.26 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 27 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 28 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.20 6.03 -2.39 -0.01 1.18 16 32 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.70 7.92 -2.39 -0.02 1.68 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 9.29 6.21 -92.71 -0.58 8.71 16 37 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 38 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 39 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 40 H -0.02 -1.08 8.10 -2.39 -0.02 -1.10 16 41 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 42 H 0.13 2.19 6.08 -2.91 -0.02 2.17 16 Total: -1.00 -77.01 346.61 4.60 -72.42 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.43 Total: 16.96 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 4.13 Total: -23.79 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -1.94 Total: -82.94 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.33 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -77.01 4.60 -72.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458441678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.134 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds