Wall clock time and date at job start Mon Mar 30 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 119.99893 * 2 1 4 4 C 1.38212 * 120.00114 * 179.78717 * 3 2 1 5 5 C 1.38259 * 119.99749 * 0.42754 * 4 3 2 6 6 C 1.50703 * 120.00036 * 179.80698 * 5 4 3 7 7 C 1.38214 * 119.99882 * 359.52877 * 5 4 3 8 8 C 1.50707 * 119.99903 * 180.25437 * 7 5 4 9 9 H 1.08997 * 109.46799 * 325.00788 * 8 7 5 10 10 C 1.53000 * 109.46668 * 85.00298 * 8 7 5 11 11 N 1.46498 * 109.46842 * 204.99956 * 8 7 5 12 12 C 1.34778 * 119.99589 * 155.00181 * 11 8 7 13 13 O 1.21287 * 119.99884 * 0.02562 * 12 11 8 14 14 C 1.50697 * 120.00264 * 180.02562 * 12 11 8 15 15 H 1.09005 * 109.46994 * 60.00015 * 14 12 11 16 16 C 1.53007 * 109.46993 * 300.00242 * 14 12 11 17 17 C 1.50699 * 109.47528 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99508 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00360 * 179.97438 * 17 14 12 20 20 N 1.31520 * 119.99780 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00437 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.46949 * 59.99955 * 21 19 17 23 23 H 1.48498 * 109.47494 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46759 * 300.00354 * 21 19 17 25 25 C 1.38213 * 120.00089 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47315 * 270.02309 * 1 2 3 27 27 H 1.09005 * 109.47660 * 30.01696 * 1 2 3 28 28 H 1.09003 * 109.47217 * 150.01989 * 1 2 3 29 29 H 1.08006 * 120.00088 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.00360 * 180.22781 * 4 3 2 31 31 H 1.09002 * 109.47152 * 269.72306 * 6 5 4 32 32 H 1.09001 * 109.46980 * 149.72407 * 6 5 4 33 33 H 1.09004 * 109.47113 * 29.72387 * 6 5 4 34 34 H 1.08998 * 109.47718 * 60.00239 * 10 8 7 35 35 H 1.09006 * 109.46776 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47700 * 299.99604 * 10 8 7 37 37 H 0.96993 * 120.00057 * 335.00246 * 11 8 7 38 38 H 1.08999 * 109.46872 * 59.99821 * 16 14 12 39 39 H 1.08996 * 109.46849 * 179.97438 * 16 14 12 40 40 H 1.09000 * 109.46679 * 299.99484 * 16 14 12 41 41 H 0.96997 * 119.99918 * 180.02562 * 20 19 17 42 42 H 1.07994 * 119.99919 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 0.0044 5 6 4.2716 0.0001 0.0000 6 6 5.7787 0.0001 0.0004 7 6 3.5806 -1.1969 0.0009 8 6 4.3341 -2.5020 0.0018 9 1 5.2448 -2.3961 -0.5877 10 6 4.6980 -2.8797 1.4391 11 7 3.4941 -3.5512 -0.5811 12 6 4.0638 -4.6338 -1.1469 13 8 5.2717 -4.7395 -1.1730 14 6 3.1999 -5.7129 -1.7471 15 1 2.5905 -5.2886 -2.5451 16 6 2.2888 -6.2972 -0.6656 17 6 4.0755 -6.8033 -2.3086 18 1 5.1502 -6.7230 -2.2375 19 6 3.5047 -7.9037 -2.9121 20 7 2.1960 -8.0016 -2.9981 21 14 4.5901 -9.2550 -3.6087 22 1 5.4207 -9.8325 -2.5216 23 1 3.7388 -10.3183 -4.2000 24 1 5.4738 -8.6879 -4.6588 25 6 2.1980 -1.1969 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1327 0.0082 31 1 6.1423 -0.0009 -1.0272 32 1 6.1418 -0.8895 0.5152 33 1 6.1418 0.8906 0.5136 34 1 3.7873 -2.9856 2.0287 35 1 5.2434 -3.8235 1.4397 36 1 5.3229 -2.0991 1.8729 37 1 2.5281 -3.4668 -0.5599 38 1 1.6555 -5.5088 -0.2591 39 1 1.6637 -7.0774 -1.0998 40 1 2.8982 -6.7215 0.1324 41 1 1.7944 -8.7759 -3.4223 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520624948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:11 Heat of formation + Delta-G solvation = -51.190762 kcal Electronic energy + Delta-G solvation = -21328.081169 eV Core-core repulsion = 18271.387602 eV Total energy + Delta-G solvation = -3056.693567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30123 -40.09459 -36.71243 -35.75090 -34.76078 -32.98188 -31.63277 -30.35470 -30.00900 -27.20865 -25.87414 -25.20326 -24.29562 -22.59751 -21.20371 -20.64725 -18.39863 -17.96105 -17.35853 -16.70554 -16.29091 -16.07616 -15.91872 -15.41966 -15.12314 -14.79160 -14.57451 -14.31655 -14.11270 -13.98410 -13.66102 -13.37583 -13.35337 -13.14714 -12.96786 -12.76490 -12.70675 -12.60964 -12.50673 -12.30948 -12.19445 -12.01574 -11.84738 -11.58176 -11.05666 -10.60557 -10.31876 -10.08175 -9.69751 -9.27583 -8.14847 -6.25333 0.39102 0.46122 1.41107 1.42763 1.51298 1.92689 2.32596 2.51120 2.79661 3.14604 3.58170 3.86934 3.98517 4.12093 4.21267 4.29705 4.33431 4.42005 4.50797 4.66340 4.73057 4.74310 4.78255 4.79615 4.86853 4.89451 4.93033 4.95016 5.02736 5.12006 5.16230 5.24124 5.37315 5.46173 5.49014 5.60792 5.70058 5.73126 5.79266 5.93892 6.12307 6.20852 6.71454 6.85230 7.39688 7.53255 8.90910 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024984 B = 0.004265 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.430749 B = 6563.177271 C = 7234.850258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.095 4.095 8 C 0.180 3.820 9 H 0.074 0.926 10 C -0.149 4.149 11 N -0.723 5.723 12 C 0.523 3.477 13 O -0.584 6.584 14 C 0.024 3.976 15 H 0.038 0.962 16 C -0.118 4.118 17 C -0.529 4.529 18 H 0.049 0.951 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.956 3.044 22 H -0.276 1.276 23 H -0.274 1.274 24 H -0.277 1.277 25 C -0.128 4.128 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 19.739 8.661 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.095 4.095 6 C -0.178 4.178 7 C -0.096 4.096 8 C 0.076 3.924 9 H 0.092 0.908 10 C -0.207 4.207 11 N -0.378 5.378 12 C 0.313 3.687 13 O -0.463 6.463 14 C 0.003 3.997 15 H 0.056 0.944 16 C -0.176 4.176 17 C -0.568 4.568 18 H 0.067 0.933 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.199 1.199 24 H -0.202 1.202 25 C -0.146 4.146 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.243 0.757 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.417 19.539 8.574 21.474 hybrid contribution 0.174 -1.084 -0.548 1.227 sum -2.242 18.455 8.026 20.249 Atomic orbital electron populations 1.20839 0.89533 1.03530 1.03136 1.20166 0.97378 0.92700 0.99194 1.21351 0.94291 0.98175 1.00221 1.21286 0.94529 0.97614 0.99892 1.19898 0.96861 0.92362 1.00344 1.20926 0.90451 1.03715 1.02701 1.19751 0.94141 0.93616 1.02060 1.19718 0.93333 0.84323 0.95027 0.90807 1.22084 1.02155 1.01587 0.94873 1.46263 1.10573 1.20636 1.60305 1.21540 0.88875 0.82603 0.75729 1.90495 1.17109 1.79082 1.59641 1.18807 0.94172 0.91593 0.95139 0.94383 1.21546 0.98527 1.01093 0.96440 1.21249 0.93224 1.04656 1.37636 0.93297 1.25601 0.96406 0.99949 0.95989 1.69944 1.10006 1.30586 1.44478 0.85645 0.78813 0.78773 0.78608 1.20126 1.19868 1.20231 1.20922 0.93286 0.98507 1.01912 0.90163 0.90159 0.91582 0.83603 0.83565 0.91343 0.91781 0.89214 0.91595 0.94019 0.89728 0.75707 0.93240 0.90974 0.95779 0.92588 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.23 0.71 -1.00 16 2 C -0.09 -1.91 5.88 -19.87 -0.12 -2.03 16 3 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 4 C -0.12 -2.14 9.70 22.27 0.22 -1.93 16 5 C -0.09 -2.14 5.88 -19.86 -0.12 -2.25 16 6 C -0.12 -2.39 9.22 71.24 0.66 -1.73 16 7 C -0.10 -2.51 5.06 -19.86 -0.10 -2.61 16 8 C 0.18 5.70 2.09 44.25 0.09 5.79 16 9 H 0.07 2.64 6.43 -2.39 -0.02 2.62 16 10 C -0.15 -4.25 9.27 71.98 0.67 -3.58 16 11 N -0.72 -26.29 4.89 -446.09 -2.18 -28.47 16 12 C 0.52 24.82 7.11 87.66 0.62 25.45 16 13 O -0.58 -31.75 15.12 -3.05 -0.05 -31.80 16 14 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 15 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 16 C -0.12 -5.48 8.86 71.98 0.64 -4.85 16 17 C -0.53 -31.21 8.37 25.60 0.21 -31.00 16 18 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 19 C 0.02 1.12 5.30 84.65 0.45 1.57 16 20 N -0.91 -51.68 11.32 21.45 0.24 -51.44 16 21 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 C -0.13 -3.12 8.89 22.27 0.20 -2.92 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 28 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 30 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.36 5.43 -2.39 -0.01 1.34 16 33 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.08 1.98 6.91 -2.39 -0.02 1.97 16 37 H 0.40 12.83 5.62 -92.71 -0.52 12.31 16 38 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 39 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 40 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.12 2.84 6.07 -2.91 -0.02 2.82 16 Total: -1.00 -68.66 338.56 4.85 -63.80 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.49 Total: 22.26 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.32 Total: -21.86 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.94 Total: -79.91 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.05 Total: -31.80 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.66 4.85 -63.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520624948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.613 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds