Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 119.99893 * 2 1 4 4 C 1.38212 * 120.00114 * 179.78717 * 3 2 1 5 5 C 1.38259 * 119.99749 * 0.42754 * 4 3 2 6 6 C 1.50703 * 120.00036 * 179.80698 * 5 4 3 7 7 C 1.38214 * 119.99882 * 359.52877 * 5 4 3 8 8 C 1.50707 * 119.99903 * 180.25437 * 7 5 4 9 9 H 1.08997 * 109.46799 * 325.00788 * 8 7 5 10 10 C 1.53000 * 109.46668 * 85.00298 * 8 7 5 11 11 N 1.46498 * 109.46842 * 204.99956 * 8 7 5 12 12 C 1.34778 * 119.99589 * 155.00181 * 11 8 7 13 13 O 1.21287 * 119.99884 * 0.02562 * 12 11 8 14 14 C 1.50697 * 120.00264 * 180.02562 * 12 11 8 15 15 H 1.09003 * 109.46967 * 300.00024 * 14 12 11 16 16 C 1.53001 * 109.47169 * 60.00038 * 14 12 11 17 17 C 1.50699 * 109.47528 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99508 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00360 * 179.97438 * 17 14 12 20 20 N 1.31520 * 119.99780 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00437 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46809 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47281 * 120.00041 * 21 19 17 24 24 H 1.48499 * 109.47366 * 240.00332 * 21 19 17 25 25 C 1.38213 * 120.00089 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47315 * 270.02309 * 1 2 3 27 27 H 1.09005 * 109.47660 * 30.01696 * 1 2 3 28 28 H 1.09003 * 109.47217 * 150.01989 * 1 2 3 29 29 H 1.08006 * 120.00088 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.00360 * 180.22781 * 4 3 2 31 31 H 1.09002 * 109.47152 * 269.72306 * 6 5 4 32 32 H 1.09001 * 109.46980 * 149.72407 * 6 5 4 33 33 H 1.09004 * 109.47113 * 29.72387 * 6 5 4 34 34 H 1.08998 * 109.47718 * 60.00239 * 10 8 7 35 35 H 1.09006 * 109.46776 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47700 * 299.99604 * 10 8 7 37 37 H 0.96993 * 120.00057 * 335.00246 * 11 8 7 38 38 H 1.08991 * 109.47468 * 180.02562 * 16 14 12 39 39 H 1.09004 * 109.46858 * 300.00283 * 16 14 12 40 40 H 1.08994 * 109.47061 * 59.99875 * 16 14 12 41 41 H 0.96997 * 119.99918 * 180.02562 * 20 19 17 42 42 H 1.07994 * 119.99919 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 0.0044 5 6 4.2716 0.0001 0.0000 6 6 5.7787 0.0001 0.0004 7 6 3.5806 -1.1969 0.0009 8 6 4.3341 -2.5020 0.0018 9 1 5.2448 -2.3961 -0.5877 10 6 4.6980 -2.8797 1.4391 11 7 3.4941 -3.5512 -0.5811 12 6 4.0638 -4.6338 -1.1469 13 8 5.2717 -4.7395 -1.1730 14 6 3.1999 -5.7129 -1.7471 15 1 2.5509 -6.1292 -0.9766 16 6 2.3446 -5.1174 -2.8673 17 6 4.0755 -6.8033 -2.3086 18 1 5.1502 -6.7230 -2.2375 19 6 3.5047 -7.9037 -2.9121 20 7 2.1960 -8.0016 -2.9981 21 14 4.5901 -9.2550 -3.6087 22 1 6.0168 -8.9077 -3.3866 23 1 4.2817 -10.5381 -2.9278 24 1 4.3349 -9.3936 -5.0650 25 6 2.1980 -1.1969 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1327 0.0082 31 1 6.1423 -0.0009 -1.0272 32 1 6.1418 -0.8895 0.5152 33 1 6.1418 0.8906 0.5136 34 1 3.7873 -2.9856 2.0287 35 1 5.2434 -3.8235 1.4397 36 1 5.3229 -2.0991 1.8729 37 1 2.5281 -3.4668 -0.5599 38 1 1.7194 -5.8977 -3.3011 39 1 1.7112 -4.3289 -2.4607 40 1 2.9935 -4.7010 -3.6376 41 1 1.7944 -8.7759 -3.4223 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520624949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -33.712203 kcal Electronic energy + Delta-G solvation = -21349.982183 eV Core-core repulsion = 18294.046544 eV Total energy + Delta-G solvation = -3055.935639 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13654 -38.56275 -35.38092 -33.76869 -33.69020 -31.30951 -30.13007 -29.41029 -28.92000 -25.10902 -25.01372 -23.95352 -22.82252 -21.30917 -20.02307 -19.11864 -16.66171 -16.22246 -15.93288 -15.52738 -14.93974 -14.56148 -14.39433 -14.24069 -13.87909 -13.39323 -13.34889 -13.26336 -12.83694 -12.69966 -12.54213 -12.23657 -12.10389 -11.93226 -11.58224 -11.49934 -11.35153 -11.01959 -10.95071 -10.68687 -10.67349 -10.52636 -10.22071 -9.93073 -8.93649 -8.84166 -8.58872 -8.51298 -8.32803 -8.28812 -6.00639 -4.03368 1.28869 1.35339 3.34026 3.41454 3.49824 3.63875 3.78502 3.94346 4.50129 4.64377 4.74057 4.79984 4.94808 5.11633 5.32636 5.33279 5.44625 5.47361 5.50088 5.53641 5.60550 5.61964 5.67645 5.79495 5.89768 6.02601 6.08582 6.15013 6.27902 6.38910 6.45092 6.55355 6.61987 6.65182 6.86254 6.95941 6.98230 7.17089 7.50846 7.78475 8.02236 8.18066 8.48401 9.06201 9.28296 9.62196 11.07103 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.004308 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.857281 B = 6497.936800 C = 7223.224525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.083 4.083 6 C -0.122 4.122 7 C -0.077 4.077 8 C 0.179 3.821 9 H 0.094 0.906 10 C -0.156 4.156 11 N -0.742 5.742 12 C 0.521 3.479 13 O -0.546 6.546 14 C 0.028 3.972 15 H 0.052 0.948 16 C -0.132 4.132 17 C -0.498 4.498 18 H 0.075 0.925 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.111 4.111 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.394 0.606 38 H 0.093 0.907 39 H 0.011 0.989 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 18.118 7.581 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.084 4.084 6 C -0.178 4.178 7 C -0.078 4.078 8 C 0.074 3.926 9 H 0.112 0.888 10 C -0.215 4.215 11 N -0.398 5.398 12 C 0.311 3.689 13 O -0.422 6.422 14 C 0.007 3.993 15 H 0.069 0.931 16 C -0.190 4.190 17 C -0.537 4.537 18 H 0.093 0.907 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.129 4.129 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.230 0.770 38 H 0.111 0.889 39 H 0.030 0.970 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.430 17.889 7.481 19.443 hybrid contribution -0.086 -0.610 -0.377 0.723 sum -1.517 17.278 7.104 18.743 Atomic orbital electron populations 1.20793 0.91208 1.02893 1.02228 1.19858 0.96035 0.92999 0.99931 1.20963 0.94129 0.97347 1.01726 1.20952 0.94125 0.97212 1.01054 1.19677 0.96066 0.92319 1.00311 1.20904 0.91234 1.02964 1.02715 1.19908 0.93779 0.94424 0.99661 1.19656 0.94191 0.83877 0.94904 0.88799 1.22161 1.01661 1.02194 0.95459 1.46506 1.09716 1.21678 1.61896 1.21970 0.89764 0.81917 0.75258 1.90521 1.15795 1.78081 1.57770 1.18879 0.94337 0.90845 0.95201 0.93064 1.21733 0.99138 0.99245 0.98843 1.21191 0.93975 1.02168 1.36327 0.90718 1.24953 0.95085 0.98222 0.96052 1.69885 1.09162 1.29676 1.44963 0.86410 0.81026 0.81414 0.78482 1.19564 1.21084 1.21081 1.20816 0.93502 0.97654 1.00947 0.91277 0.91693 0.91277 0.86324 0.86169 0.90956 0.90859 0.91620 0.92545 0.91375 0.92094 0.77022 0.88861 0.97034 0.95014 0.93074 0.85975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.00 0.36 -0.65 16 2 C -0.09 -1.00 5.88 -104.63 -0.62 -1.61 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.69 16 4 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.08 -1.02 5.88 -104.62 -0.62 -1.63 16 6 C -0.12 -1.28 9.22 36.01 0.33 -0.95 16 7 C -0.08 -1.05 5.06 -104.62 -0.53 -1.58 16 8 C 0.18 2.81 2.09 -69.08 -0.14 2.66 16 9 H 0.09 1.63 6.43 -51.93 -0.33 1.29 16 10 C -0.16 -2.23 9.27 37.16 0.34 -1.89 16 11 N -0.74 -13.35 4.89 -54.93 -0.27 -13.62 16 12 C 0.52 12.01 7.11 -10.99 -0.08 11.93 16 13 O -0.55 -14.25 15.12 5.55 0.08 -14.17 16 14 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 15 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 17 C -0.50 -14.26 8.37 -34.44 -0.29 -14.55 16 18 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 19 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 20 N -0.90 -25.34 11.32 55.43 0.63 -24.71 16 21 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.11 -1.42 8.89 -39.59 -0.35 -1.78 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.80 5.43 -51.93 -0.28 0.52 16 33 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.73 6.91 -51.93 -0.36 0.38 16 37 H 0.39 6.30 5.62 -40.82 -0.23 6.07 16 38 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.12 1.50 6.07 -52.49 -0.32 1.18 16 LS Contribution 338.57 15.07 5.10 5.10 Total: -1.00 -31.43 338.57 -8.20 -39.63 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.36 Total: 4.96 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.36 Total: -14.14 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.36 Total: -38.34 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.43 -8.20 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520624949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.921 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds