Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 119.99893 * 2 1 4 4 C 1.38212 * 120.00114 * 179.78717 * 3 2 1 5 5 C 1.38259 * 119.99749 * 0.42754 * 4 3 2 6 6 C 1.50703 * 120.00036 * 179.80698 * 5 4 3 7 7 C 1.38214 * 119.99882 * 359.52877 * 5 4 3 8 8 C 1.50707 * 119.99903 * 180.25437 * 7 5 4 9 9 H 1.08997 * 109.46799 * 325.00788 * 8 7 5 10 10 C 1.53000 * 109.46668 * 85.00298 * 8 7 5 11 11 N 1.46498 * 109.46842 * 204.99956 * 8 7 5 12 12 C 1.34778 * 119.99589 * 155.00181 * 11 8 7 13 13 O 1.21287 * 119.99884 * 0.02562 * 12 11 8 14 14 C 1.50697 * 120.00264 * 180.02562 * 12 11 8 15 15 H 1.09003 * 109.46967 * 300.00024 * 14 12 11 16 16 C 1.53001 * 109.47169 * 60.00038 * 14 12 11 17 17 C 1.50699 * 109.47528 * 180.02562 * 14 12 11 18 18 H 1.08000 * 119.99508 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00360 * 179.97438 * 17 14 12 20 20 N 1.31520 * 119.99780 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00437 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.46809 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47281 * 120.00041 * 21 19 17 24 24 H 1.48499 * 109.47366 * 240.00332 * 21 19 17 25 25 C 1.38213 * 120.00089 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47315 * 270.02309 * 1 2 3 27 27 H 1.09005 * 109.47660 * 30.01696 * 1 2 3 28 28 H 1.09003 * 109.47217 * 150.01989 * 1 2 3 29 29 H 1.08006 * 120.00088 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.00360 * 180.22781 * 4 3 2 31 31 H 1.09002 * 109.47152 * 269.72306 * 6 5 4 32 32 H 1.09001 * 109.46980 * 149.72407 * 6 5 4 33 33 H 1.09004 * 109.47113 * 29.72387 * 6 5 4 34 34 H 1.08998 * 109.47718 * 60.00239 * 10 8 7 35 35 H 1.09006 * 109.46776 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.47700 * 299.99604 * 10 8 7 37 37 H 0.96993 * 120.00057 * 335.00246 * 11 8 7 38 38 H 1.08991 * 109.47468 * 180.02562 * 16 14 12 39 39 H 1.09004 * 109.46858 * 300.00283 * 16 14 12 40 40 H 1.08994 * 109.47061 * 59.99875 * 16 14 12 41 41 H 0.96997 * 119.99918 * 180.02562 * 20 19 17 42 42 H 1.07994 * 119.99919 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1974 0.0044 5 6 4.2716 0.0001 0.0000 6 6 5.7787 0.0001 0.0004 7 6 3.5806 -1.1969 0.0009 8 6 4.3341 -2.5020 0.0018 9 1 5.2448 -2.3961 -0.5877 10 6 4.6980 -2.8797 1.4391 11 7 3.4941 -3.5512 -0.5811 12 6 4.0638 -4.6338 -1.1469 13 8 5.2717 -4.7395 -1.1730 14 6 3.1999 -5.7129 -1.7471 15 1 2.5509 -6.1292 -0.9766 16 6 2.3446 -5.1174 -2.8673 17 6 4.0755 -6.8033 -2.3086 18 1 5.1502 -6.7230 -2.2375 19 6 3.5047 -7.9037 -2.9121 20 7 2.1960 -8.0016 -2.9981 21 14 4.5901 -9.2550 -3.6087 22 1 6.0168 -8.9077 -3.3866 23 1 4.2817 -10.5381 -2.9278 24 1 4.3349 -9.3936 -5.0650 25 6 2.1980 -1.1969 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1327 0.0082 31 1 6.1423 -0.0009 -1.0272 32 1 6.1418 -0.8895 0.5152 33 1 6.1418 0.8906 0.5136 34 1 3.7873 -2.9856 2.0287 35 1 5.2434 -3.8235 1.4397 36 1 5.3229 -2.0991 1.8729 37 1 2.5281 -3.4668 -0.5599 38 1 1.7194 -5.8977 -3.3011 39 1 1.7112 -4.3289 -2.4607 40 1 2.9935 -4.7010 -3.6376 41 1 1.7944 -8.7759 -3.4223 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520624949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = -51.329691 kcal Electronic energy + Delta-G solvation = -21350.746135 eV Core-core repulsion = 18294.046544 eV Total energy + Delta-G solvation = -3056.699591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.30085 -40.09335 -36.71471 -35.75361 -34.75936 -32.98830 -31.63533 -30.34700 -30.00391 -27.21220 -25.88344 -25.23899 -24.26781 -22.58327 -21.20629 -20.65944 -18.38188 -17.98390 -17.36234 -16.69976 -16.30460 -16.07995 -15.90062 -15.39193 -15.06543 -14.90555 -14.53872 -14.42848 -14.10993 -13.76971 -13.69318 -13.50681 -13.32097 -13.16981 -12.97399 -12.76214 -12.66248 -12.59981 -12.53725 -12.30178 -12.20147 -12.03687 -11.84612 -11.57993 -11.04152 -10.61299 -10.32001 -10.07971 -9.69561 -9.27343 -8.15405 -6.25663 0.39372 0.46411 1.39263 1.41099 1.54767 1.92599 2.32696 2.51022 2.79854 3.14139 3.58243 3.87125 3.98693 4.12247 4.21357 4.29930 4.33468 4.41266 4.50832 4.66378 4.72201 4.74236 4.78308 4.79671 4.87033 4.89291 4.93008 4.94672 5.02108 5.11816 5.16386 5.24119 5.37466 5.46133 5.48806 5.60965 5.70322 5.72699 5.79447 5.93275 6.12528 6.20325 6.71596 6.85393 7.39633 7.53210 8.90799 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.004308 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.857281 B = 6497.936800 C = 7223.224525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.094 4.094 6 C -0.122 4.122 7 C -0.095 4.095 8 C 0.180 3.820 9 H 0.074 0.926 10 C -0.150 4.150 11 N -0.723 5.723 12 C 0.523 3.477 13 O -0.584 6.584 14 C 0.024 3.976 15 H 0.041 0.959 16 C -0.118 4.118 17 C -0.527 4.527 18 H 0.049 0.951 19 C 0.019 3.981 20 N -0.911 5.911 21 Si 0.956 3.044 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.127 4.127 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.021 0.979 41 H 0.265 0.735 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 20.110 7.947 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.133 4.133 5 C -0.094 4.094 6 C -0.178 4.178 7 C -0.095 4.095 8 C 0.076 3.924 9 H 0.092 0.908 10 C -0.208 4.208 11 N -0.378 5.378 12 C 0.312 3.688 13 O -0.463 6.463 14 C 0.003 3.997 15 H 0.059 0.941 16 C -0.176 4.176 17 C -0.566 4.566 18 H 0.067 0.933 19 C -0.180 4.180 20 N -0.551 5.551 21 Si 0.782 3.218 22 H -0.205 1.205 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.146 4.146 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.414 19.912 7.865 21.545 hybrid contribution 0.157 -1.137 -0.456 1.235 sum -2.257 18.775 7.409 20.310 Atomic orbital electron populations 1.20839 0.89538 1.03542 1.03121 1.20163 0.97370 0.92694 0.99191 1.21349 0.94285 0.98175 1.00220 1.21284 0.94532 0.97609 0.99903 1.19894 0.96847 0.92362 1.00345 1.20926 0.90469 1.03705 1.02698 1.19747 0.94143 0.93598 1.02062 1.19717 0.93351 0.84345 0.94991 0.90805 1.22091 1.02159 1.01618 0.94900 1.46264 1.10573 1.20713 1.60225 1.21541 0.88882 0.82765 0.75563 1.90497 1.17120 1.79132 1.59582 1.18815 0.94250 0.91198 0.95476 0.94127 1.21543 0.98695 0.99449 0.97927 1.21306 0.93241 1.04186 1.37840 0.93320 1.25603 0.96401 0.99922 0.96054 1.69957 1.09995 1.30271 1.44839 0.85532 0.78854 0.79087 0.78349 1.20461 1.19912 1.19910 1.20915 0.93271 0.98492 1.01897 0.90192 0.90155 0.91562 0.83612 0.83578 0.91347 0.91792 0.89219 0.91610 0.94006 0.89693 0.75705 0.90914 0.93343 0.95980 0.92601 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.23 0.71 -0.99 16 2 C -0.09 -1.90 5.88 -19.87 -0.12 -2.02 16 3 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 4 C -0.12 -2.14 9.70 22.27 0.22 -1.93 16 5 C -0.09 -2.13 5.88 -19.86 -0.12 -2.25 16 6 C -0.12 -2.39 9.22 71.24 0.66 -1.74 16 7 C -0.09 -2.50 5.06 -19.86 -0.10 -2.60 16 8 C 0.18 5.70 2.09 44.25 0.09 5.79 16 9 H 0.07 2.64 6.43 -2.39 -0.02 2.63 16 10 C -0.15 -4.27 9.27 71.98 0.67 -3.61 16 11 N -0.72 -26.29 4.89 -446.09 -2.18 -28.47 16 12 C 0.52 24.83 7.11 87.66 0.62 25.45 16 13 O -0.58 -31.81 15.12 -3.05 -0.05 -31.85 16 14 C 0.02 1.23 2.64 -12.29 -0.03 1.19 16 15 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.12 -5.54 8.87 71.98 0.64 -4.90 16 17 C -0.53 -31.11 8.37 25.60 0.21 -30.90 16 18 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 19 C 0.02 1.09 5.30 84.65 0.45 1.54 16 20 N -0.91 -51.64 11.32 21.45 0.24 -51.40 16 21 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 C -0.13 -3.10 8.89 22.27 0.20 -2.90 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 28 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.36 5.43 -2.39 -0.01 1.34 16 33 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.08 1.99 6.91 -2.39 -0.02 1.98 16 37 H 0.40 12.83 5.62 -92.71 -0.52 12.31 16 38 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 39 H 0.05 1.85 7.57 -2.38 -0.02 1.83 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.12 2.83 6.07 -2.91 -0.02 2.81 16 Total: -1.00 -68.79 338.57 4.85 -63.93 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.49 Total: 22.10 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.32 Total: -21.82 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.94 Total: -79.87 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.05 Total: -31.85 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.79 4.85 -63.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520624949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.605 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds