Wall clock time and date at job start Mon Mar 30 2020 01:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38259 * 119.99686 * 2 1 4 4 C 1.38218 * 119.99520 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99977 * 359.76276 * 4 3 2 6 6 C 1.38210 * 120.00097 * 0.46712 * 5 4 3 7 7 C 1.50696 * 120.00396 * 179.78496 * 6 5 4 8 8 C 1.53002 * 109.47443 * 269.72940 * 7 6 5 9 9 C 1.52997 * 109.47290 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47112 * 180.02562 * 9 8 7 11 11 C 1.47962 * 111.00206 * 170.00029 * 10 9 8 12 12 C 1.53933 * 86.18036 * 137.57868 * 11 10 9 13 13 O 1.42903 * 113.73455 * 90.64263 * 12 11 10 14 14 C 1.50702 * 113.73325 * 221.81483 * 12 11 10 15 15 H 1.07996 * 120.00082 * 358.09933 * 14 12 11 16 16 C 1.37882 * 119.99818 * 178.10181 * 14 12 11 17 17 N 1.31515 * 119.99822 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99751 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47342 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47106 * 120.00183 * 18 16 14 21 21 H 1.48502 * 109.47136 * 240.00067 * 18 16 14 22 22 C 1.48304 * 111.00332 * 269.35041 * 10 9 8 23 23 C 1.38210 * 119.99975 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47165 * 270.02251 * 1 2 3 25 25 H 1.09000 * 109.47228 * 30.01897 * 1 2 3 26 26 H 1.09001 * 109.47334 * 150.01953 * 1 2 3 27 27 H 1.07994 * 120.00737 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.99878 * 179.97438 * 4 3 2 29 29 H 1.08007 * 119.99864 * 180.25570 * 5 4 3 30 30 H 1.08993 * 109.47935 * 149.72578 * 7 6 5 31 31 H 1.09001 * 109.46931 * 29.72783 * 7 6 5 32 32 H 1.09003 * 109.46885 * 59.99783 * 8 7 6 33 33 H 1.09001 * 109.46929 * 299.99844 * 8 7 6 34 34 H 1.08991 * 109.47191 * 59.99856 * 9 8 7 35 35 H 1.09001 * 109.47318 * 299.99987 * 9 8 7 36 36 H 1.08997 * 113.75944 * 23.26083 * 11 10 9 37 37 H 1.09001 * 113.85960 * 251.90728 * 11 10 9 38 38 H 0.96700 * 114.00311 * 181.89938 * 13 12 11 39 39 H 0.97006 * 119.99605 * 180.02562 * 17 16 14 40 40 H 1.09004 * 113.85839 * 108.14487 * 22 10 9 41 41 H 1.09000 * 113.75896 * 336.68350 * 22 10 9 42 42 H 1.07999 * 120.00174 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5806 -1.1969 -0.0009 7 6 4.3340 -2.5020 -0.0010 8 6 4.5881 -2.9443 -1.4435 9 6 5.3535 -4.2690 -1.4436 10 7 5.5980 -4.6932 -2.8285 11 6 6.5357 -5.8368 -2.8752 12 6 5.5984 -6.4292 -3.9428 13 8 5.9437 -6.0608 -5.2797 14 6 5.3574 -7.9084 -3.7850 15 1 5.8515 -8.4548 -2.9953 16 6 4.5060 -8.5643 -4.6488 17 7 3.9047 -7.8990 -5.6108 18 14 4.2078 -10.3979 -4.4535 19 1 4.9985 -10.9085 -3.3048 20 1 2.7636 -10.6412 -4.2082 21 1 4.6249 -11.1020 -5.6927 22 6 4.4951 -5.5522 -3.3238 23 6 2.1981 -1.1969 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1327 -0.0010 29 1 5.3517 0.0000 0.0076 30 1 3.7454 -3.2615 0.5135 31 1 5.2868 -2.3716 0.5121 32 1 5.1769 -2.1848 -1.9580 33 1 3.6353 -3.0748 -1.9567 34 1 4.7652 -5.0286 -0.9290 35 1 6.3063 -4.1381 -0.9305 36 1 6.5700 -6.4145 -1.9516 37 1 7.5254 -5.5803 -3.2532 38 1 5.3404 -6.4071 -5.9514 39 1 3.3054 -8.3603 -6.2183 40 1 3.8550 -5.0667 -4.0605 41 1 3.9339 -6.0469 -2.5311 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559779689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:02 Heat of formation + Delta-G solvation = -10.915342 kcal Electronic energy + Delta-G solvation = -20540.452358 eV Core-core repulsion = 17485.505264 eV Total energy + Delta-G solvation = -3054.947093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.57532 -38.88894 -35.27673 -33.90062 -32.47643 -32.05801 -30.70875 -27.72733 -26.96836 -25.61295 -25.03671 -23.19542 -22.02394 -20.75526 -20.26505 -18.56908 -17.18541 -16.53649 -15.75080 -15.15004 -15.13484 -14.80174 -14.66606 -13.99801 -13.99447 -13.54073 -13.47693 -13.14073 -12.85407 -12.59894 -12.40003 -12.05236 -11.98026 -11.62530 -11.43356 -11.30609 -11.22513 -11.09335 -10.89127 -10.80140 -10.45401 -10.37614 -10.15381 -9.90327 -9.25767 -8.82411 -8.63857 -8.59425 -8.18309 -7.75049 -6.24416 -4.34273 1.30093 1.33953 3.18905 3.27772 3.31642 3.68511 4.26525 4.63097 4.71397 4.78856 4.90212 5.00947 5.06663 5.19277 5.21256 5.41116 5.43859 5.46076 5.57379 5.63101 5.66956 5.72439 5.87139 6.00433 6.03920 6.09198 6.11659 6.13781 6.28270 6.36827 6.41666 6.49776 6.52165 6.62119 6.66702 6.73058 6.97730 7.07887 7.25722 7.39617 7.77586 8.01890 8.06322 8.67812 9.35741 9.64870 10.81377 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.003222 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.426015 B = 8689.475021 C = 9181.855574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.131 4.131 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.068 4.068 7 C -0.082 4.082 8 C -0.100 4.100 9 C 0.020 3.980 10 N -0.481 5.481 11 C 0.009 3.991 12 C 0.243 3.757 13 O -0.572 6.572 14 C -0.537 4.537 15 H 0.065 0.935 16 C 0.070 3.930 17 N -0.897 5.897 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.012 4.012 23 C -0.118 4.118 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.387 0.613 39 H 0.269 0.731 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 13.940 11.666 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.068 4.068 7 C -0.120 4.120 8 C -0.138 4.138 9 C -0.110 4.110 10 N -0.203 5.203 11 C -0.120 4.120 12 C 0.202 3.798 13 O -0.383 6.383 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.141 4.141 23 C -0.136 4.136 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.241 0.759 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.624 14.835 11.485 19.108 hybrid contribution -0.966 -1.873 0.371 2.140 sum -4.589 12.962 11.856 18.156 Atomic orbital electron populations 1.20791 0.91351 1.02822 1.02149 1.19911 0.95989 0.93212 0.99542 1.20973 0.94297 0.97321 1.02323 1.21102 0.94287 0.97907 1.00093 1.21052 0.99861 0.92004 1.01265 1.19955 0.93698 0.95277 0.97897 1.20653 0.99609 0.93453 0.98281 1.21408 1.00800 0.97239 0.94373 1.22637 0.99063 0.96355 0.92900 1.68545 1.08008 1.27519 1.16246 1.24091 0.97994 0.91171 0.98761 1.19761 0.88117 0.90965 0.80977 1.86043 1.57256 1.78056 1.16915 1.21702 1.26855 0.93840 1.15181 0.91689 1.25063 0.94523 0.98990 0.94591 1.69445 1.30133 1.36396 1.17765 0.86381 0.77994 0.84415 0.78284 1.19626 1.20793 1.20677 1.24784 0.95727 0.94359 0.99195 1.20971 0.93695 0.97605 1.01352 0.91333 0.91664 0.91432 0.86455 0.86275 0.86150 0.91156 0.91099 0.91446 0.91969 0.94464 0.92109 0.91893 0.90806 0.75873 0.92030 0.91098 0.92328 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.13 -1.36 9.70 -39.58 -0.38 -1.75 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 5 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 6 C -0.07 -0.84 5.13 -104.63 -0.54 -1.38 16 7 C -0.08 -1.00 5.35 -27.88 -0.15 -1.15 16 8 C -0.10 -1.51 5.51 -26.73 -0.15 -1.66 16 9 C 0.02 0.33 4.80 -3.83 -0.02 0.32 16 10 N -0.48 -10.23 6.17 -237.94 -1.47 -11.70 16 11 C 0.01 0.19 7.34 -2.76 -0.02 0.17 16 12 C 0.24 6.25 1.40 -90.84 -0.13 6.13 16 13 O -0.57 -15.72 13.48 -35.23 -0.48 -16.19 16 14 C -0.54 -14.49 8.61 -34.44 -0.30 -14.78 16 15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 16 C 0.07 1.87 5.40 -17.82 -0.10 1.77 16 17 N -0.90 -24.23 11.20 55.43 0.62 -23.61 16 18 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.01 -0.27 7.37 -2.57 -0.02 -0.29 16 23 C -0.12 -1.42 9.36 -39.58 -0.37 -1.79 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.64 7.38 -51.93 -0.38 0.26 16 35 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.06 1.31 7.87 -51.93 -0.41 0.90 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.39 10.77 6.60 45.56 0.30 11.07 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.06 1.36 7.43 -51.93 -0.39 0.98 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -28.57 346.07 -10.66 -39.22 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.33 Total: 11.61 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -3.20 Total: -20.00 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: -0.85 Total: -35.31 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.48 Total: -16.19 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.57 -10.66 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.309 kcal (2) G-P(sol) polarization free energy of solvation -28.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds