Wall clock time and date at job start Mon Mar 30 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38259 * 119.99686 * 2 1 4 4 C 1.38218 * 119.99520 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99977 * 359.76276 * 4 3 2 6 6 C 1.38210 * 120.00097 * 0.46712 * 5 4 3 7 7 C 1.50696 * 120.00396 * 179.78496 * 6 5 4 8 8 C 1.53002 * 109.47443 * 269.72940 * 7 6 5 9 9 C 1.52997 * 109.47290 * 179.97438 * 8 7 6 10 10 N 1.46896 * 109.47112 * 180.02562 * 9 8 7 11 11 C 1.47962 * 111.00206 * 170.00029 * 10 9 8 12 12 C 1.53933 * 86.18036 * 137.57868 * 11 10 9 13 13 O 1.42903 * 113.73455 * 90.64263 * 12 11 10 14 14 C 1.50702 * 113.73325 * 221.81483 * 12 11 10 15 15 H 1.07996 * 120.00082 * 358.09933 * 14 12 11 16 16 C 1.37882 * 119.99818 * 178.10181 * 14 12 11 17 17 N 1.31515 * 119.99822 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99751 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47342 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47106 * 120.00183 * 18 16 14 21 21 H 1.48502 * 109.47136 * 240.00067 * 18 16 14 22 22 C 1.48304 * 111.00332 * 269.35041 * 10 9 8 23 23 C 1.38210 * 119.99975 * 179.97438 * 2 1 3 24 24 H 1.08994 * 109.47165 * 270.02251 * 1 2 3 25 25 H 1.09000 * 109.47228 * 30.01897 * 1 2 3 26 26 H 1.09001 * 109.47334 * 150.01953 * 1 2 3 27 27 H 1.07994 * 120.00737 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.99878 * 179.97438 * 4 3 2 29 29 H 1.08007 * 119.99864 * 180.25570 * 5 4 3 30 30 H 1.08993 * 109.47935 * 149.72578 * 7 6 5 31 31 H 1.09001 * 109.46931 * 29.72783 * 7 6 5 32 32 H 1.09003 * 109.46885 * 59.99783 * 8 7 6 33 33 H 1.09001 * 109.46929 * 299.99844 * 8 7 6 34 34 H 1.08991 * 109.47191 * 59.99856 * 9 8 7 35 35 H 1.09001 * 109.47318 * 299.99987 * 9 8 7 36 36 H 1.08997 * 113.75944 * 23.26083 * 11 10 9 37 37 H 1.09001 * 113.85960 * 251.90728 * 11 10 9 38 38 H 0.96700 * 114.00311 * 181.89938 * 13 12 11 39 39 H 0.97006 * 119.99605 * 180.02562 * 17 16 14 40 40 H 1.09004 * 113.85839 * 108.14487 * 22 10 9 41 41 H 1.09000 * 113.75896 * 336.68350 * 22 10 9 42 42 H 1.07999 * 120.00174 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 0.0039 6 6 3.5806 -1.1969 -0.0009 7 6 4.3340 -2.5020 -0.0010 8 6 4.5881 -2.9443 -1.4435 9 6 5.3535 -4.2690 -1.4436 10 7 5.5980 -4.6932 -2.8285 11 6 6.5357 -5.8368 -2.8752 12 6 5.5984 -6.4292 -3.9428 13 8 5.9437 -6.0608 -5.2797 14 6 5.3574 -7.9084 -3.7850 15 1 5.8515 -8.4548 -2.9953 16 6 4.5060 -8.5643 -4.6488 17 7 3.9047 -7.8990 -5.6108 18 14 4.2078 -10.3979 -4.4535 19 1 4.9985 -10.9085 -3.3048 20 1 2.7636 -10.6412 -4.2082 21 1 4.6249 -11.1020 -5.6927 22 6 4.4951 -5.5522 -3.3238 23 6 2.1981 -1.1969 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6583 2.1327 -0.0004 28 1 4.1205 2.1327 -0.0010 29 1 5.3517 0.0000 0.0076 30 1 3.7454 -3.2615 0.5135 31 1 5.2868 -2.3716 0.5121 32 1 5.1769 -2.1848 -1.9580 33 1 3.6353 -3.0748 -1.9567 34 1 4.7652 -5.0286 -0.9290 35 1 6.3063 -4.1381 -0.9305 36 1 6.5700 -6.4145 -1.9516 37 1 7.5254 -5.5803 -3.2532 38 1 5.3404 -6.4071 -5.9514 39 1 3.3054 -8.3603 -6.2183 40 1 3.8550 -5.0667 -4.0605 41 1 3.9339 -6.0469 -2.5311 42 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559779689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:01 Heat of formation + Delta-G solvation = -28.534751 kcal Electronic energy + Delta-G solvation = -20541.216393 eV Core-core repulsion = 17485.505264 eV Total energy + Delta-G solvation = -3055.711128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79301 -40.29827 -36.75536 -35.40368 -34.12945 -33.34219 -31.87207 -29.27024 -27.80052 -27.17622 -26.87299 -24.62549 -22.90594 -22.15682 -21.19341 -20.47359 -19.18354 -17.37264 -17.18044 -16.79619 -16.69431 -16.10851 -15.92735 -15.58929 -15.10744 -14.98877 -14.59137 -14.10685 -13.94838 -13.91492 -13.76203 -13.41553 -13.38679 -13.06642 -12.96579 -12.75346 -12.57266 -12.37252 -12.27076 -12.19108 -12.10072 -11.81782 -11.55954 -11.43101 -11.15018 -10.63531 -10.12866 -9.67683 -9.56051 -9.43598 -8.24720 -6.43018 0.46164 0.49989 1.40181 1.43300 1.54504 2.36803 2.82899 2.96171 3.15620 3.76211 3.87245 4.01606 4.02264 4.11056 4.21488 4.28138 4.29806 4.40252 4.47732 4.53756 4.59955 4.61050 4.67359 4.75137 4.81480 4.84373 4.88028 4.92113 4.98407 5.11998 5.13623 5.23126 5.31895 5.36922 5.42239 5.56563 5.59464 5.70578 5.74118 5.77231 5.98920 6.16681 6.36191 6.62640 7.30109 7.50281 8.80229 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025886 B = 0.003222 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.426015 B = 8689.475021 C = 9181.855574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.137 4.137 6 C -0.085 4.085 7 C -0.072 4.072 8 C -0.089 4.089 9 C 0.019 3.981 10 N -0.485 5.485 11 C 0.017 3.983 12 C 0.216 3.784 13 O -0.584 6.584 14 C -0.561 4.561 15 H 0.064 0.936 16 C 0.026 3.974 17 N -0.919 5.919 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.278 1.278 22 C 0.000 4.000 23 C -0.138 4.138 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.381 0.619 39 H 0.273 0.727 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.280 14.454 13.070 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.155 4.155 4 C -0.139 4.139 5 C -0.155 4.155 6 C -0.086 4.086 7 C -0.110 4.110 8 C -0.127 4.127 9 C -0.109 4.109 10 N -0.208 5.208 11 C -0.111 4.111 12 C 0.175 3.825 13 O -0.395 6.395 14 C -0.599 4.599 15 H 0.082 0.918 16 C -0.174 4.174 17 N -0.559 5.559 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.204 1.204 22 C -0.130 4.130 23 C -0.156 4.156 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.234 0.766 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.752 15.363 12.902 20.410 hybrid contribution -0.927 -1.959 -0.070 2.169 sum -4.679 13.404 12.832 19.137 Atomic orbital electron populations 1.20829 0.89801 1.03329 1.03033 1.20250 0.97351 0.93118 0.99020 1.21320 0.94577 0.98062 1.01510 1.21439 0.94649 0.98555 0.99225 1.21283 1.00601 0.92156 1.01414 1.20034 0.93958 0.95540 0.99024 1.20539 1.00507 0.93713 0.96197 1.21280 0.99262 0.95955 0.96241 1.22726 1.00496 0.97171 0.90514 1.68469 1.06548 1.26554 1.19220 1.24035 0.97604 0.91326 0.98163 1.20161 0.90395 0.91190 0.80766 1.86026 1.57408 1.78214 1.17846 1.21951 1.27472 0.94782 1.15689 0.91767 1.25833 0.94138 1.03209 0.94217 1.69526 1.30284 1.37955 1.18165 0.85361 0.77954 0.79164 0.78245 1.19142 1.20242 1.20411 1.24524 0.95466 0.94271 0.98713 1.21147 0.93958 0.98253 1.02235 0.90190 0.90421 0.91675 0.84230 0.84020 0.85097 0.90774 0.89637 0.92132 0.93876 0.94249 0.90057 0.90337 0.90660 0.76593 0.91727 0.93111 0.92351 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.04 16 2 C -0.10 -2.02 5.88 -19.87 -0.12 -2.14 16 3 C -0.14 -2.58 9.70 22.27 0.22 -2.37 16 4 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 5 C -0.14 -2.95 9.70 22.27 0.22 -2.73 16 6 C -0.09 -2.03 5.13 -19.87 -0.10 -2.14 16 7 C -0.07 -1.67 5.35 29.85 0.16 -1.51 16 8 C -0.09 -2.63 5.51 30.59 0.17 -2.46 16 9 C 0.02 0.64 4.80 86.30 0.41 1.06 16 10 N -0.49 -20.46 6.17 -909.93 -5.61 -26.07 16 11 C 0.02 0.76 7.34 86.41 0.63 1.40 16 12 C 0.22 11.19 1.40 -10.90 -0.02 11.17 16 13 O -0.58 -32.78 13.48 -148.98 -2.01 -34.79 16 14 C -0.56 -30.29 8.61 25.60 0.22 -30.07 16 15 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 16 C 0.03 1.37 5.40 84.66 0.46 1.83 16 17 N -0.92 -50.08 11.20 21.45 0.24 -49.84 16 18 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 C 0.00 -0.01 7.37 86.34 0.64 0.62 16 23 C -0.14 -3.25 9.36 22.27 0.21 -3.04 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 26 H 0.06 1.02 8.09 -2.39 -0.02 1.01 16 27 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 28 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 30 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.09 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.04 1.30 7.38 -2.39 -0.02 1.28 16 35 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 36 H 0.08 3.16 7.87 -2.39 -0.02 3.15 16 37 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.38 21.81 6.60 -74.06 -0.49 21.32 16 39 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 40 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.06 2.74 7.43 -2.39 -0.02 2.72 16 42 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -60.46 346.07 -0.82 -61.29 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.50 Total: 39.15 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.03 Total: -33.51 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -5.37 Total: -75.92 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -2.01 Total: -34.79 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -60.46 -0.82 -61.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559779689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.753 kcal (2) G-P(sol) polarization free energy of solvation -60.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds