Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32739 * 118.40404 * 2 1 4 4 C 1.50709 * 119.69310 * 0.42875 * 3 2 1 5 5 C 1.52999 * 109.47004 * 94.55269 * 4 3 2 6 6 C 1.47198 * 109.46803 * 180.02562 * 5 4 3 7 7 N 5.61963 * 72.32609 * 15.90724 * 2 1 3 8 8 C 1.46670 * 120.61235 * 180.40858 * 3 2 1 9 9 O 1.21333 * 121.12619 * 168.30315 * 8 3 2 10 10 C 1.51478 * 117.74394 * 348.57048 * 8 3 2 11 11 H 1.09002 * 109.89377 * 161.37248 * 10 8 3 12 12 C 1.53001 * 109.89444 * 282.47987 * 10 8 3 13 13 C 1.50693 * 109.47182 * 295.00004 * 12 10 8 14 14 H 1.07995 * 120.00094 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99823 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47068 * 60.00470 * 17 15 13 19 19 H 1.48499 * 109.47468 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47205 * 300.00398 * 17 15 13 21 21 C 1.53540 * 107.29242 * 41.93165 * 10 8 3 22 22 C 1.52997 * 109.55042 * 178.17403 * 21 10 8 23 23 C 1.52998 * 109.62372 * 57.93915 * 21 10 8 24 24 C 1.49985 * 118.40631 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47175 * 65.01768 * 1 2 3 26 26 H 1.09001 * 109.47261 * 185.01752 * 1 2 3 27 27 H 1.09000 * 109.47354 * 305.01828 * 1 2 3 28 28 H 1.08999 * 109.47043 * 214.55190 * 4 3 2 29 29 H 1.08997 * 109.46712 * 334.55085 * 4 3 2 30 30 H 1.08999 * 109.47155 * 299.99851 * 5 4 3 31 31 H 1.08997 * 109.47494 * 59.99765 * 5 4 3 32 32 H 1.09005 * 109.46917 * 55.00416 * 12 10 8 33 33 H 1.09005 * 109.46864 * 174.99899 * 12 10 8 34 34 H 0.96993 * 120.00162 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47597 * 179.53591 * 22 21 10 36 36 H 1.08996 * 109.46789 * 299.54339 * 22 21 10 37 37 H 1.09003 * 109.47354 * 59.53692 * 22 21 10 38 38 H 1.08990 * 109.47273 * 300.41959 * 23 21 10 39 39 H 1.09004 * 109.46459 * 60.41769 * 23 21 10 40 40 H 1.09001 * 109.47100 * 180.41426 * 23 21 10 41 41 H 1.08997 * 109.14548 * 278.51916 * 24 2 1 42 42 H 1.09004 * 109.13691 * 37.70675 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1384 1.1676 0.0000 4 6 1.3419 2.4470 0.0098 5 6 1.1791 2.9353 1.4506 6 6 0.4007 4.1846 1.4602 7 7 -0.1992 5.1493 1.4675 8 6 3.6039 1.2241 -0.0090 9 8 4.1902 2.2653 -0.2197 10 6 4.3609 -0.0627 0.2476 11 1 5.3880 0.0348 -0.1040 12 6 4.3496 -0.3839 1.7434 13 6 5.1139 0.6781 2.4910 14 1 5.5623 1.5002 1.9532 15 6 5.2396 0.6007 3.8619 16 7 4.6931 -0.4001 4.5169 17 14 6.1863 1.9175 4.7888 18 1 5.5480 3.2389 4.5612 19 1 6.1755 1.6057 6.2406 20 1 7.5886 1.9547 4.3013 21 6 3.6457 -1.1759 -0.5313 22 6 4.3969 -2.4955 -0.3443 23 6 3.6033 -0.8172 -2.0181 24 6 2.2205 -1.3193 0.0006 25 1 -0.3633 0.4340 -0.9315 26 1 -0.3634 -1.0237 0.0899 27 1 -0.3634 0.5897 0.8416 28 1 1.8646 3.2048 -0.5738 29 1 0.3593 2.2665 -0.4260 30 1 0.6564 2.1775 2.0342 31 1 2.1617 3.1157 1.8864 32 1 3.3204 -0.4110 2.1015 33 1 4.8180 -1.3540 1.9102 34 1 4.7818 -0.4547 5.4813 35 1 3.8836 -3.2866 -0.8910 36 1 5.4133 -2.3919 -0.7241 37 1 4.4292 -2.7483 0.7155 38 1 3.0708 0.1246 -2.1496 39 1 4.6206 -0.7153 -2.3962 40 1 3.0887 -1.6055 -2.5675 41 1 2.2563 -1.7058 1.0191 42 1 1.6738 -2.0214 -0.6289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001737245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = -31.958483 kcal Electronic energy + Delta-G solvation = -22259.428860 eV Core-core repulsion = 19203.569268 eV Total energy + Delta-G solvation = -3055.859592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31652 -37.02214 -36.87419 -35.35418 -33.08148 -31.88837 -30.24545 -28.36623 -27.08343 -26.82576 -25.43974 -23.28101 -21.93524 -20.58534 -19.11037 -17.41206 -16.54298 -15.84244 -15.67125 -15.28097 -14.68841 -14.57984 -14.34123 -14.08927 -13.54518 -13.32793 -13.16415 -12.87224 -12.77110 -12.48679 -12.31844 -12.19083 -12.07738 -11.90221 -11.77244 -11.59540 -11.38833 -11.22391 -11.09259 -10.94235 -10.77038 -10.55207 -10.44114 -10.41928 -10.02763 -9.38208 -9.12713 -8.62906 -8.49851 -8.32914 -6.05444 -4.06708 1.53473 2.87686 2.92991 3.33371 3.37310 3.42535 3.46668 4.16110 4.44008 4.66475 4.84596 4.86018 5.16433 5.21243 5.29668 5.32301 5.32923 5.39291 5.50379 5.55452 5.69131 5.79549 5.82694 5.86417 5.94010 5.97908 6.08732 6.13271 6.15399 6.18929 6.29514 6.38455 6.43573 6.50433 6.66329 6.74731 6.84293 6.91947 7.55503 7.62122 7.69051 7.93752 8.32112 8.37058 9.00590 9.58494 11.05161 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.008855 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.515150 B = 3161.397548 C = 4811.072275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.065 4.065 5 C -0.028 4.028 6 C 0.218 3.782 7 N -0.455 5.455 8 C 0.419 3.581 9 O -0.469 6.469 10 C -0.115 4.115 11 H 0.083 0.917 12 C 0.038 3.962 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.058 4.058 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.085 4.085 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.026 0.974 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 -4.957 -10.064 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.036 4.036 3 C -0.205 4.205 4 C -0.104 4.104 5 C -0.068 4.068 6 C -0.099 4.099 7 N -0.132 5.132 8 C 0.298 3.702 9 O -0.345 6.345 10 C -0.135 4.135 11 H 0.102 0.898 12 C 0.001 3.999 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.533 5.533 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.058 4.058 22 C -0.197 4.197 23 C -0.204 4.204 24 C -0.121 4.121 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.168 -3.033 -9.979 13.247 hybrid contribution 0.796 0.289 0.752 1.132 sum -7.372 -2.744 -9.227 12.125 Atomic orbital electron populations 1.21092 0.92190 1.02973 1.02467 1.22045 0.95529 0.94410 0.91570 1.21502 0.95799 0.94372 1.08794 1.20306 0.99765 0.95568 0.94735 1.19351 1.00046 0.87750 0.99645 1.29369 0.93165 0.94642 0.92689 1.81168 1.11049 1.11891 1.09082 1.22497 0.88124 0.89919 0.69641 1.90449 1.72596 1.33917 1.37517 1.22185 0.98609 0.91586 1.01086 0.89833 1.19103 0.97981 0.97584 0.85238 1.21266 1.33827 1.09164 0.91955 0.92280 1.24915 0.95600 0.95588 0.97708 1.69924 1.44757 1.30536 1.08108 0.86747 0.80840 0.82453 0.78610 1.20156 1.21345 1.20195 1.20646 0.94378 0.96255 0.94528 1.21862 0.99659 0.95251 1.02897 1.21981 1.01745 1.01142 0.95487 1.20662 0.94527 0.93820 1.03093 0.90847 0.91499 0.90752 0.90031 0.90494 0.87166 0.86342 0.95601 0.94986 0.92949 0.93280 0.92645 0.91142 0.92836 0.92633 0.92779 0.88392 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.54 36.00 0.31 -0.91 16 2 C -0.03 -0.44 5.23 -101.58 -0.53 -0.97 16 3 C -0.20 -3.04 4.45 -103.10 -0.46 -3.49 16 4 C -0.07 -0.85 4.57 -27.88 -0.13 -0.97 16 5 C -0.03 -0.37 5.65 -29.52 -0.17 -0.53 16 6 C 0.22 3.16 15.43 -20.76 -0.32 2.84 16 7 N -0.45 -7.59 18.54 42.15 0.78 -6.81 16 8 C 0.42 7.90 4.40 -30.52 -0.13 7.76 16 9 O -0.47 -10.22 17.11 5.51 0.09 -10.12 16 10 C -0.12 -2.17 1.76 -91.11 -0.16 -2.33 16 11 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 12 C 0.04 0.85 3.72 -27.89 -0.10 0.75 16 13 C -0.52 -13.90 8.62 -34.44 -0.30 -14.20 16 14 H 0.06 1.63 7.47 -52.49 -0.39 1.24 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.06 -0.83 0.56 -154.34 -0.09 -0.91 16 22 C -0.14 -1.87 8.20 37.16 0.30 -1.57 16 23 C -0.15 -1.86 8.06 37.16 0.30 -1.56 16 24 C -0.08 -1.08 3.77 -28.33 -0.11 -1.19 16 25 H 0.07 0.60 7.57 -51.93 -0.39 0.20 16 26 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 27 H 0.07 0.66 7.14 -51.93 -0.37 0.29 16 28 H 0.08 1.15 7.74 -51.93 -0.40 0.74 16 29 H 0.08 0.80 6.24 -51.93 -0.32 0.47 16 30 H 0.11 1.25 7.52 -51.93 -0.39 0.86 16 31 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.03 0.60 6.50 -51.93 -0.34 0.26 16 33 H 0.03 0.76 6.40 -51.93 -0.33 0.43 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.06 6.46 -51.93 -0.34 0.72 16 38 H 0.05 0.71 6.19 -51.93 -0.32 0.39 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.39 6.87 -51.93 -0.36 1.03 16 42 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -30.63 337.56 -6.46 -37.10 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.46 Total: -1.67 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.68 Total: -15.67 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 1.52 Total: -31.05 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.63 -6.46 -37.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001737245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.138 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds