Wall clock time and date at job start Mon Mar 30 2020 01:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32739 * 118.40404 * 2 1 4 4 C 1.50709 * 119.69310 * 0.42875 * 3 2 1 5 5 C 1.52999 * 109.47004 * 94.55269 * 4 3 2 6 6 C 1.47198 * 109.46803 * 180.02562 * 5 4 3 7 7 N 5.61963 * 72.32609 * 15.90724 * 2 1 3 8 8 C 1.46670 * 120.61235 * 180.40858 * 3 2 1 9 9 O 1.21333 * 121.12619 * 168.30315 * 8 3 2 10 10 C 1.51478 * 117.74394 * 348.57048 * 8 3 2 11 11 H 1.09002 * 109.89377 * 161.37248 * 10 8 3 12 12 C 1.53001 * 109.89444 * 282.47987 * 10 8 3 13 13 C 1.50693 * 109.47182 * 295.00004 * 12 10 8 14 14 H 1.07995 * 120.00094 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99823 * 179.97438 * 13 12 10 16 16 N 1.31510 * 120.00244 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00042 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47068 * 60.00470 * 17 15 13 19 19 H 1.48499 * 109.47468 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47205 * 300.00398 * 17 15 13 21 21 C 1.53540 * 107.29242 * 41.93165 * 10 8 3 22 22 C 1.52997 * 109.55042 * 178.17403 * 21 10 8 23 23 C 1.52998 * 109.62372 * 57.93915 * 21 10 8 24 24 C 1.49985 * 118.40631 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47175 * 65.01768 * 1 2 3 26 26 H 1.09001 * 109.47261 * 185.01752 * 1 2 3 27 27 H 1.09000 * 109.47354 * 305.01828 * 1 2 3 28 28 H 1.08999 * 109.47043 * 214.55190 * 4 3 2 29 29 H 1.08997 * 109.46712 * 334.55085 * 4 3 2 30 30 H 1.08999 * 109.47155 * 299.99851 * 5 4 3 31 31 H 1.08997 * 109.47494 * 59.99765 * 5 4 3 32 32 H 1.09005 * 109.46917 * 55.00416 * 12 10 8 33 33 H 1.09005 * 109.46864 * 174.99899 * 12 10 8 34 34 H 0.96993 * 120.00162 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.47597 * 179.53591 * 22 21 10 36 36 H 1.08996 * 109.46789 * 299.54339 * 22 21 10 37 37 H 1.09003 * 109.47354 * 59.53692 * 22 21 10 38 38 H 1.08990 * 109.47273 * 300.41959 * 23 21 10 39 39 H 1.09004 * 109.46459 * 60.41769 * 23 21 10 40 40 H 1.09001 * 109.47100 * 180.41426 * 23 21 10 41 41 H 1.08997 * 109.14548 * 278.51916 * 24 2 1 42 42 H 1.09004 * 109.13691 * 37.70675 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1384 1.1676 0.0000 4 6 1.3419 2.4470 0.0098 5 6 1.1791 2.9353 1.4506 6 6 0.4007 4.1846 1.4602 7 7 -0.1992 5.1493 1.4675 8 6 3.6039 1.2241 -0.0090 9 8 4.1902 2.2653 -0.2197 10 6 4.3609 -0.0627 0.2476 11 1 5.3880 0.0348 -0.1040 12 6 4.3496 -0.3839 1.7434 13 6 5.1139 0.6781 2.4910 14 1 5.5623 1.5002 1.9532 15 6 5.2396 0.6007 3.8619 16 7 4.6931 -0.4001 4.5169 17 14 6.1863 1.9175 4.7888 18 1 5.5480 3.2389 4.5612 19 1 6.1755 1.6057 6.2406 20 1 7.5886 1.9547 4.3013 21 6 3.6457 -1.1759 -0.5313 22 6 4.3969 -2.4955 -0.3443 23 6 3.6033 -0.8172 -2.0181 24 6 2.2205 -1.3193 0.0006 25 1 -0.3633 0.4340 -0.9315 26 1 -0.3634 -1.0237 0.0899 27 1 -0.3634 0.5897 0.8416 28 1 1.8646 3.2048 -0.5738 29 1 0.3593 2.2665 -0.4260 30 1 0.6564 2.1775 2.0342 31 1 2.1617 3.1157 1.8864 32 1 3.3204 -0.4110 2.1015 33 1 4.8180 -1.3540 1.9102 34 1 4.7818 -0.4547 5.4813 35 1 3.8836 -3.2866 -0.8910 36 1 5.4133 -2.3919 -0.7241 37 1 4.4292 -2.7483 0.7155 38 1 3.0708 0.1246 -2.1496 39 1 4.6206 -0.7153 -2.3962 40 1 3.0887 -1.6055 -2.5675 41 1 2.2563 -1.7058 1.0191 42 1 1.6738 -2.0214 -0.6289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001737245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:17 Heat of formation + Delta-G solvation = -47.967336 kcal Electronic energy + Delta-G solvation = -22260.123056 eV Core-core repulsion = 19203.569268 eV Total energy + Delta-G solvation = -3056.553788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60249 -38.39915 -38.09101 -36.52977 -35.03836 -32.97869 -31.89448 -29.56228 -28.06511 -27.90471 -27.13201 -24.54262 -23.51701 -21.89112 -20.31231 -18.55012 -18.46237 -17.21810 -16.92777 -16.61406 -16.41099 -15.90791 -15.61812 -15.33786 -14.82759 -14.73526 -14.24032 -14.12650 -13.85694 -13.78548 -13.58135 -13.42629 -13.35009 -13.06908 -13.02614 -12.85463 -12.84383 -12.66761 -12.46884 -12.30052 -12.23142 -11.99005 -11.85943 -11.64776 -11.48517 -11.04795 -10.86581 -10.53605 -9.97856 -9.58282 -8.16975 -6.22685 0.34468 1.37417 1.38474 1.46446 1.68840 1.75361 2.14305 2.41546 3.01849 3.17301 3.44553 3.72705 3.78158 4.05337 4.17410 4.25737 4.27824 4.32324 4.48557 4.58397 4.65888 4.73862 4.85300 4.92029 4.96551 4.99059 5.02063 5.07101 5.08622 5.13664 5.20341 5.22212 5.30960 5.36104 5.42170 5.50429 5.60119 5.67548 5.80125 5.83638 5.90336 6.31604 6.52940 6.87629 6.96826 7.44628 8.92772 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.008855 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.515150 B = 3161.397548 C = 4811.072275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.003 4.003 3 C -0.237 4.237 4 C -0.056 4.056 5 C -0.023 4.023 6 C 0.242 3.758 7 N -0.492 5.492 8 C 0.414 3.586 9 O -0.516 6.516 10 C -0.119 4.119 11 H 0.055 0.945 12 C 0.052 3.948 13 C -0.539 4.539 14 H 0.038 0.962 15 C 0.023 3.977 16 N -0.916 5.916 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.054 4.054 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.091 4.091 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.092 0.908 32 H 0.021 0.979 33 H 0.016 0.984 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 -6.498 -11.034 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.004 4.004 3 C -0.238 4.238 4 C -0.095 4.095 5 C -0.062 4.062 6 C -0.074 4.074 7 N -0.170 5.170 8 C 0.297 3.703 9 O -0.396 6.396 10 C -0.139 4.139 11 H 0.074 0.926 12 C 0.016 3.984 13 C -0.577 4.577 14 H 0.056 0.944 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.760 3.240 18 H -0.202 1.202 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.054 4.054 22 C -0.194 4.194 23 C -0.199 4.199 24 C -0.127 4.127 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.561 -4.591 -10.947 15.889 hybrid contribution 1.596 0.664 1.044 2.020 sum -8.965 -3.927 -9.903 13.923 Atomic orbital electron populations 1.21250 0.88795 1.04954 1.03993 1.22460 0.97802 0.93261 0.86901 1.21278 0.93322 0.96275 1.12916 1.20262 1.00919 0.94166 0.94108 1.19391 0.98698 0.87722 1.00436 1.29482 0.92255 0.94270 0.91440 1.81190 1.12485 1.12854 1.10469 1.22901 0.90385 0.88852 0.68207 1.90418 1.73902 1.35097 1.40177 1.22094 0.98266 0.94324 0.99167 0.92632 1.18848 0.96609 0.95457 0.87525 1.21550 1.34070 1.09530 0.92529 0.94356 1.25504 0.96445 0.97251 0.98460 1.69984 1.45641 1.31583 1.08356 0.85986 0.79637 0.80355 0.78023 1.20244 1.20211 1.20211 1.20644 0.95076 0.94618 0.95092 1.21837 0.99815 0.95809 1.01932 1.21940 1.01755 1.01963 0.94216 1.20798 0.93788 0.94890 1.03211 0.88509 0.89345 0.89792 0.91884 0.86963 0.84700 0.88971 0.96033 0.96593 0.92750 0.89791 0.93329 0.93312 0.93509 0.93464 0.89398 0.89520 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.54 71.23 0.61 -1.17 16 2 C 0.00 -0.08 5.23 -17.85 -0.09 -0.17 16 3 C -0.24 -6.76 4.45 -18.83 -0.08 -6.85 16 4 C -0.06 -1.37 4.57 29.85 0.14 -1.24 16 5 C -0.02 -0.57 5.65 28.79 0.16 -0.41 16 6 C 0.24 6.78 15.43 89.44 1.38 8.16 16 7 N -0.49 -16.10 18.54 20.01 0.37 -15.73 16 8 C 0.41 16.04 4.40 28.14 0.12 16.16 16 9 O -0.52 -23.83 17.11 -3.19 -0.05 -23.88 16 10 C -0.12 -4.62 1.76 -11.11 -0.02 -4.64 16 11 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 12 C 0.05 2.45 3.72 29.85 0.11 2.56 16 13 C -0.54 -29.70 8.62 25.60 0.22 -29.48 16 14 H 0.04 2.23 7.47 -2.91 -0.02 2.21 16 15 C 0.02 1.25 5.46 84.66 0.46 1.72 16 16 N -0.92 -51.69 13.29 21.45 0.28 -51.40 16 17 Si 0.93 44.49 29.54 68.60 2.03 46.52 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 C -0.05 -1.47 0.56 -52.07 -0.03 -1.50 16 22 C -0.14 -3.49 8.20 71.98 0.59 -2.90 16 23 C -0.14 -3.28 8.06 71.98 0.58 -2.70 16 24 C -0.09 -2.02 3.77 29.56 0.11 -1.91 16 25 H 0.10 0.97 7.57 -2.39 -0.02 0.95 16 26 H 0.09 0.87 7.95 -2.39 -0.02 0.85 16 27 H 0.08 1.06 7.14 -2.39 -0.02 1.04 16 28 H 0.06 1.77 7.74 -2.39 -0.02 1.75 16 29 H 0.11 1.91 6.24 -2.39 -0.01 1.89 16 30 H 0.14 2.74 7.52 -2.39 -0.02 2.72 16 31 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.02 1.01 6.50 -2.38 -0.02 1.00 16 33 H 0.02 0.79 6.40 -2.38 -0.02 0.77 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.45 6.46 -2.39 -0.02 1.44 16 38 H 0.05 1.15 6.19 -2.39 -0.01 1.14 16 39 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 2.25 6.87 -2.39 -0.02 2.23 16 42 H 0.12 1.69 8.12 -2.39 -0.02 1.67 16 Total: -1.00 -69.85 337.56 7.90 -61.95 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.01 Total: 6.91 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.26 Total: -24.36 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.66 Total: -67.13 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.85 7.90 -61.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001737245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.984 kcal (2) G-P(sol) polarization free energy of solvation -69.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds