Wall clock time and date at job start Mon Mar 30 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32736 * 118.40133 * 2 1 4 4 C 1.50697 * 119.69677 * 359.54472 * 3 2 1 5 5 C 1.52998 * 109.47369 * 267.66184 * 4 3 2 6 6 C 1.47198 * 109.47337 * 179.97438 * 5 4 3 7 7 N 5.60817 * 71.78774 * 343.95038 * 2 1 3 8 8 C 1.46672 * 120.60916 * 179.82339 * 3 2 1 9 9 O 1.21330 * 121.12893 * 191.16620 * 8 3 2 10 10 C 1.51379 * 117.80609 * 10.94429 * 8 3 2 11 11 H 1.09000 * 109.98494 * 198.91417 * 10 8 3 12 12 C 1.53004 * 109.66360 * 77.89801 * 10 8 3 13 13 C 1.50695 * 109.47554 * 67.12536 * 12 10 8 14 14 H 1.08005 * 120.00155 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00296 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00214 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47036 * 59.99844 * 17 15 13 19 19 H 1.48502 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46873 * 299.99585 * 17 15 13 21 21 C 1.53534 * 107.43009 * 318.49696 * 10 8 3 22 22 C 1.53004 * 109.54356 * 301.90563 * 21 10 8 23 23 C 1.52998 * 109.62381 * 181.68063 * 21 10 8 24 24 C 1.49980 * 118.40104 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47324 * 5.50921 * 1 2 3 26 26 H 1.08999 * 109.47275 * 125.50972 * 1 2 3 27 27 H 1.09008 * 109.47153 * 245.50914 * 1 2 3 28 28 H 1.09006 * 109.47086 * 147.65574 * 4 3 2 29 29 H 1.09002 * 109.47169 * 27.66424 * 4 3 2 30 30 H 1.09003 * 109.46962 * 60.00153 * 5 4 3 31 31 H 1.08997 * 109.47115 * 299.99768 * 5 4 3 32 32 H 1.09007 * 109.46869 * 187.12573 * 12 10 8 33 33 H 1.09004 * 109.46777 * 307.11867 * 12 10 8 34 34 H 0.97001 * 119.99819 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46944 * 179.53728 * 22 21 10 36 36 H 1.08992 * 109.47179 * 299.53997 * 22 21 10 37 37 H 1.09004 * 109.46858 * 59.54610 * 22 21 10 38 38 H 1.09007 * 109.46706 * 300.40914 * 23 21 10 39 39 H 1.08998 * 109.47495 * 60.40754 * 23 21 10 40 40 H 1.09000 * 109.47403 * 180.41114 * 23 21 10 41 41 H 1.08998 * 109.14259 * 322.37484 * 24 2 1 42 42 H 1.08999 * 109.14513 * 81.50661 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1383 1.1676 0.0000 4 6 1.3420 2.4469 -0.0104 5 6 1.1325 2.9056 -1.4549 6 6 0.3541 4.1549 -1.4651 7 7 -0.2458 5.1196 -1.4728 8 6 3.6040 1.2241 0.0039 9 8 4.1909 2.2667 0.2051 10 6 4.3609 -0.0627 -0.2464 11 1 5.3879 0.0347 0.1055 12 6 4.3502 -0.3837 -1.7423 13 6 5.1592 0.6492 -2.4836 14 1 5.6333 1.4545 -1.9421 15 6 5.2933 0.5669 -3.8534 16 7 4.7157 -0.4133 -4.5130 17 14 6.2956 1.8478 -4.7724 18 1 7.6942 1.8334 -4.2734 19 1 6.2852 1.5361 -6.2242 20 1 5.7044 3.1918 -4.5499 21 6 3.6454 -1.1760 0.5320 22 6 3.6026 -0.8153 2.0182 23 6 4.3960 -2.4963 0.3472 24 6 2.2204 -1.3193 -0.0006 25 1 -0.3634 1.0229 -0.0987 26 1 -0.3634 -0.5969 -0.8365 27 1 -0.3634 -0.4260 0.9353 28 1 1.8833 3.2163 0.5403 29 1 0.3739 2.2762 0.4606 30 1 0.5912 2.1362 -2.0055 31 1 2.1005 3.0764 -1.9259 32 1 4.7839 -1.3704 -1.9053 33 1 3.3237 -0.3730 -2.1088 34 1 4.8104 -0.4714 -5.4766 35 1 3.0872 -1.6025 2.5685 36 1 4.6196 -0.7135 2.3968 37 1 3.0703 0.1270 2.1482 38 1 4.4286 -2.7505 -0.7124 39 1 5.4123 -2.3928 0.7274 40 1 3.8820 -3.2863 0.8947 41 1 1.6730 -2.0219 0.6277 42 1 2.2566 -1.7056 -1.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005328569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:21 Heat of formation + Delta-G solvation = -27.087522 kcal Electronic energy + Delta-G solvation = -22246.269841 eV Core-core repulsion = 19190.621470 eV Total energy + Delta-G solvation = -3055.648372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33295 -37.02364 -36.91322 -35.40169 -33.08069 -31.85726 -30.24887 -28.36783 -27.10569 -26.82478 -25.43477 -23.31052 -21.93633 -20.58077 -19.08769 -17.41061 -16.54860 -15.97160 -15.67543 -15.28745 -14.70713 -14.57449 -14.35443 -14.07990 -13.55966 -13.33134 -13.19451 -12.88598 -12.82609 -12.55345 -12.32796 -12.13906 -11.98831 -11.86728 -11.76777 -11.59363 -11.38431 -11.19508 -11.07903 -10.93286 -10.70711 -10.56736 -10.43460 -10.41443 -10.02698 -9.37911 -9.12173 -8.63777 -8.50787 -8.32766 -6.05290 -4.06503 1.52967 2.86771 2.92148 3.33579 3.37409 3.42655 3.46450 4.14896 4.44220 4.65467 4.81609 4.85799 5.15967 5.20859 5.29023 5.32247 5.35776 5.39584 5.50888 5.59001 5.65944 5.77739 5.82133 5.86564 5.89744 5.98023 6.07982 6.13417 6.16579 6.19204 6.29809 6.38815 6.43724 6.51370 6.66522 6.74623 6.84200 6.92378 7.55662 7.61950 7.68159 7.93883 8.31850 8.37011 9.00629 9.58669 11.05314 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.008700 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.051205 B = 3217.764123 C = 4844.402846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.035 4.035 3 C -0.202 4.202 4 C -0.069 4.069 5 C -0.029 4.029 6 C 0.218 3.782 7 N -0.454 5.454 8 C 0.419 3.581 9 O -0.468 6.468 10 C -0.116 4.116 11 H 0.084 0.916 12 C 0.038 3.962 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.886 3.114 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.057 4.057 22 C -0.146 4.146 23 C -0.140 4.140 24 C -0.085 4.085 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.032 0.968 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -4.926 10.067 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 C -0.203 4.203 4 C -0.107 4.107 5 C -0.069 4.069 6 C -0.099 4.099 7 N -0.131 5.131 8 C 0.297 3.703 9 O -0.344 6.344 10 C -0.135 4.135 11 H 0.102 0.898 12 C 0.001 3.999 13 C -0.562 4.562 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.534 5.534 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.057 4.057 22 C -0.204 4.204 23 C -0.197 4.197 24 C -0.121 4.121 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.294 -2.998 9.975 13.314 hybrid contribution 0.828 0.249 -0.748 1.143 sum -7.465 -2.748 9.227 12.183 Atomic orbital electron populations 1.21271 0.92232 1.03627 1.02641 1.22027 0.95568 0.94428 0.91504 1.21501 0.95789 0.94331 1.08723 1.20390 0.99856 0.95750 0.94714 1.19399 0.99962 0.87861 0.99644 1.29371 0.93178 0.94651 0.92715 1.81170 1.11046 1.11872 1.09052 1.22484 0.88120 0.90000 0.69650 1.90449 1.72542 1.33930 1.37488 1.22170 0.98639 0.91581 1.01106 0.89770 1.19108 0.97931 0.97639 0.85247 1.21265 1.31773 1.11068 0.92057 0.92300 1.24918 0.95671 0.95561 0.97685 1.69930 1.44078 1.31333 1.08017 0.86742 0.81047 0.82257 0.78570 1.20197 1.21345 1.20159 1.20637 0.94346 0.96242 0.94523 1.21985 1.01750 1.01138 0.95497 1.21862 0.99665 0.95235 1.02905 1.20606 0.94515 0.93880 1.03123 0.90660 0.90557 0.91048 0.89951 0.90070 0.87133 0.86350 0.94940 0.95653 0.92956 0.92796 0.92626 0.92827 0.91129 0.92635 0.93282 0.90920 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.69 36.01 0.35 -0.97 16 2 C -0.03 -0.44 5.22 -101.58 -0.53 -0.97 16 3 C -0.20 -3.01 4.41 -103.10 -0.45 -3.47 16 4 C -0.07 -0.89 4.49 -27.89 -0.13 -1.01 16 5 C -0.03 -0.37 5.61 -29.52 -0.17 -0.54 16 6 C 0.22 3.13 15.43 -20.76 -0.32 2.81 16 7 N -0.45 -7.53 18.54 42.15 0.78 -6.75 16 8 C 0.42 7.89 4.49 -30.57 -0.14 7.75 16 9 O -0.47 -10.22 17.18 5.51 0.09 -10.13 16 10 C -0.12 -2.18 1.73 -91.16 -0.16 -2.33 16 11 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 12 C 0.04 0.85 3.68 -27.88 -0.10 0.75 16 13 C -0.52 -13.93 8.65 -34.44 -0.30 -14.22 16 14 H 0.06 1.63 7.64 -52.48 -0.40 1.22 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.02 13.29 55.43 0.74 -24.28 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.06 -0.82 0.56 -154.33 -0.09 -0.91 16 22 C -0.15 -1.86 8.06 37.16 0.30 -1.56 16 23 C -0.14 -1.88 8.21 37.16 0.31 -1.57 16 24 C -0.08 -1.08 3.89 -28.33 -0.11 -1.19 16 25 H 0.07 0.65 5.09 -51.93 -0.26 0.39 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 29 H 0.08 0.84 5.78 -51.93 -0.30 0.54 16 30 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.12 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.03 0.77 6.31 -51.92 -0.33 0.44 16 33 H 0.03 0.59 6.58 -51.93 -0.34 0.25 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.71 6.19 -51.93 -0.32 0.39 16 38 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 42 H 0.10 1.38 6.92 -51.93 -0.36 1.02 16 LS Contribution 337.80 15.07 5.09 5.09 Total: -1.00 -30.72 337.80 -6.36 -37.08 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -6.41 Total: -1.54 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.63 Total: -15.82 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 1.52 Total: -31.03 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.72 -6.36 -37.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005328569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.989 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds