Wall clock time and date at job start Mon Mar 30 2020 01:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32736 * 118.40133 * 2 1 4 4 C 1.50697 * 119.69677 * 359.54472 * 3 2 1 5 5 C 1.52998 * 109.47369 * 267.66184 * 4 3 2 6 6 C 1.47198 * 109.47337 * 179.97438 * 5 4 3 7 7 N 5.60817 * 71.78774 * 343.95038 * 2 1 3 8 8 C 1.46672 * 120.60916 * 179.82339 * 3 2 1 9 9 O 1.21330 * 121.12893 * 191.16620 * 8 3 2 10 10 C 1.51379 * 117.80609 * 10.94429 * 8 3 2 11 11 H 1.09000 * 109.98494 * 198.91417 * 10 8 3 12 12 C 1.53004 * 109.66360 * 77.89801 * 10 8 3 13 13 C 1.50695 * 109.47554 * 67.12536 * 12 10 8 14 14 H 1.08005 * 120.00155 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00296 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99929 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00214 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47036 * 59.99844 * 17 15 13 19 19 H 1.48502 * 109.47003 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46873 * 299.99585 * 17 15 13 21 21 C 1.53534 * 107.43009 * 318.49696 * 10 8 3 22 22 C 1.53004 * 109.54356 * 301.90563 * 21 10 8 23 23 C 1.52998 * 109.62381 * 181.68063 * 21 10 8 24 24 C 1.49980 * 118.40104 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47324 * 5.50921 * 1 2 3 26 26 H 1.08999 * 109.47275 * 125.50972 * 1 2 3 27 27 H 1.09008 * 109.47153 * 245.50914 * 1 2 3 28 28 H 1.09006 * 109.47086 * 147.65574 * 4 3 2 29 29 H 1.09002 * 109.47169 * 27.66424 * 4 3 2 30 30 H 1.09003 * 109.46962 * 60.00153 * 5 4 3 31 31 H 1.08997 * 109.47115 * 299.99768 * 5 4 3 32 32 H 1.09007 * 109.46869 * 187.12573 * 12 10 8 33 33 H 1.09004 * 109.46777 * 307.11867 * 12 10 8 34 34 H 0.97001 * 119.99819 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46944 * 179.53728 * 22 21 10 36 36 H 1.08992 * 109.47179 * 299.53997 * 22 21 10 37 37 H 1.09004 * 109.46858 * 59.54610 * 22 21 10 38 38 H 1.09007 * 109.46706 * 300.40914 * 23 21 10 39 39 H 1.08998 * 109.47495 * 60.40754 * 23 21 10 40 40 H 1.09000 * 109.47403 * 180.41114 * 23 21 10 41 41 H 1.08998 * 109.14259 * 322.37484 * 24 2 1 42 42 H 1.08999 * 109.14513 * 81.50661 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1383 1.1676 0.0000 4 6 1.3420 2.4469 -0.0104 5 6 1.1325 2.9056 -1.4549 6 6 0.3541 4.1549 -1.4651 7 7 -0.2458 5.1196 -1.4728 8 6 3.6040 1.2241 0.0039 9 8 4.1909 2.2667 0.2051 10 6 4.3609 -0.0627 -0.2464 11 1 5.3879 0.0347 0.1055 12 6 4.3502 -0.3837 -1.7423 13 6 5.1592 0.6492 -2.4836 14 1 5.6333 1.4545 -1.9421 15 6 5.2933 0.5669 -3.8534 16 7 4.7157 -0.4133 -4.5130 17 14 6.2956 1.8478 -4.7724 18 1 7.6942 1.8334 -4.2734 19 1 6.2852 1.5361 -6.2242 20 1 5.7044 3.1918 -4.5499 21 6 3.6454 -1.1760 0.5320 22 6 3.6026 -0.8153 2.0182 23 6 4.3960 -2.4963 0.3472 24 6 2.2204 -1.3193 -0.0006 25 1 -0.3634 1.0229 -0.0987 26 1 -0.3634 -0.5969 -0.8365 27 1 -0.3634 -0.4260 0.9353 28 1 1.8833 3.2163 0.5403 29 1 0.3739 2.2762 0.4606 30 1 0.5912 2.1362 -2.0055 31 1 2.1005 3.0764 -1.9259 32 1 4.7839 -1.3704 -1.9053 33 1 3.3237 -0.3730 -2.1088 34 1 4.8104 -0.4714 -5.4766 35 1 3.0872 -1.6025 2.5685 36 1 4.6196 -0.7135 2.3968 37 1 3.0703 0.1270 2.1482 38 1 4.4286 -2.7505 -0.7124 39 1 5.4123 -2.3928 0.7274 40 1 3.8820 -3.2863 0.8947 41 1 1.6730 -2.0219 0.6277 42 1 2.2566 -1.7056 -1.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005328569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:20 Heat of formation + Delta-G solvation = -43.210386 kcal Electronic energy + Delta-G solvation = -22246.968981 eV Core-core repulsion = 19190.621470 eV Total energy + Delta-G solvation = -3056.347512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61800 -38.40245 -38.12106 -36.57480 -35.04264 -32.94596 -31.89870 -29.56604 -28.08859 -27.90319 -27.12890 -24.55423 -23.53605 -21.88607 -20.29283 -18.53964 -18.46428 -17.27506 -16.97845 -16.62119 -16.41620 -15.93370 -15.61716 -15.32990 -14.83039 -14.73083 -14.28823 -14.13996 -13.92921 -13.77422 -13.61982 -13.42465 -13.35921 -13.02944 -12.98376 -12.84862 -12.84337 -12.66206 -12.45730 -12.28305 -12.21196 -11.99573 -11.74613 -11.67807 -11.45871 -11.04322 -10.86241 -10.54120 -9.98149 -9.59026 -8.17219 -6.22927 0.33981 1.37348 1.38293 1.46354 1.68729 1.75514 2.14262 2.41436 3.01579 3.16972 3.43481 3.72647 3.76542 4.04454 4.17411 4.25002 4.28387 4.32437 4.46160 4.63030 4.68014 4.72579 4.85298 4.88382 4.94746 4.99558 5.00687 5.06170 5.09895 5.12669 5.19740 5.22794 5.30398 5.35299 5.43820 5.50252 5.61296 5.69618 5.80170 5.83417 5.90338 6.31373 6.53045 6.87239 6.96242 7.44351 8.92506 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011082 B = 0.008700 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.051205 B = 3217.764123 C = 4844.402846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 C -0.236 4.236 4 C -0.060 4.060 5 C -0.023 4.023 6 C 0.242 3.758 7 N -0.492 5.492 8 C 0.413 3.587 9 O -0.516 6.516 10 C -0.119 4.119 11 H 0.055 0.945 12 C 0.052 3.948 13 C -0.539 4.539 14 H 0.038 0.962 15 C 0.022 3.978 16 N -0.916 5.916 17 Si 0.934 3.066 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.278 1.278 21 C -0.054 4.054 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.091 4.091 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.017 0.983 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 -6.536 11.043 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 C -0.237 4.237 4 C -0.098 4.098 5 C -0.063 4.063 6 C -0.075 4.075 7 N -0.170 5.170 8 C 0.296 3.704 9 O -0.396 6.396 10 C -0.139 4.139 11 H 0.074 0.926 12 C 0.015 3.985 13 C -0.577 4.577 14 H 0.056 0.944 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.761 3.239 18 H -0.201 1.201 19 H -0.202 1.202 20 H -0.203 1.203 21 C -0.054 4.054 22 C -0.199 4.199 23 C -0.194 4.194 24 C -0.127 4.127 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.111 0.889 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.675 -4.625 10.950 15.977 hybrid contribution 1.624 0.642 -1.042 2.033 sum -9.052 -3.983 9.908 13.999 Atomic orbital electron populations 1.21403 0.88813 1.04878 1.04708 1.22443 0.97834 0.93280 0.86835 1.21270 0.93297 0.96250 1.12868 1.20354 1.00933 0.94304 0.94252 1.19441 0.98728 0.87857 1.00264 1.29490 0.92256 0.94279 0.91456 1.81192 1.12506 1.12856 1.10441 1.22894 0.90395 0.88933 0.68200 1.90418 1.73859 1.35124 1.40174 1.22079 0.98285 0.94316 0.99182 0.92601 1.18854 0.96479 0.95585 0.87540 1.21554 1.32114 1.11402 0.92634 0.94402 1.25511 0.96630 0.97144 0.98422 1.69990 1.44962 1.32353 1.08270 0.85977 0.79753 0.80202 0.78011 1.20144 1.20180 1.20320 1.20636 0.95054 0.94591 0.95091 1.21945 1.01762 1.01965 0.94223 1.21837 0.99818 0.95799 1.01936 1.20736 0.93757 0.94938 1.03258 0.89830 0.89027 0.88142 0.91902 0.86566 0.84577 0.88918 0.96448 0.96151 0.92748 0.89388 0.93469 0.93497 0.93308 0.93339 0.89772 0.86615 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.69 71.24 0.69 -1.19 16 2 C 0.00 -0.07 5.22 -17.85 -0.09 -0.16 16 3 C -0.24 -6.74 4.41 -18.84 -0.08 -6.82 16 4 C -0.06 -1.47 4.49 29.85 0.13 -1.34 16 5 C -0.02 -0.57 5.61 28.79 0.16 -0.41 16 6 C 0.24 6.72 15.43 89.44 1.38 8.10 16 7 N -0.49 -16.02 18.54 20.01 0.37 -15.65 16 8 C 0.41 16.04 4.49 28.11 0.13 16.17 16 9 O -0.52 -23.90 17.18 -3.18 -0.05 -23.96 16 10 C -0.12 -4.63 1.73 -11.14 -0.02 -4.65 16 11 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 12 C 0.05 2.45 3.68 29.85 0.11 2.56 16 13 C -0.54 -29.81 8.65 25.60 0.22 -29.59 16 14 H 0.04 2.21 7.64 -2.91 -0.02 2.19 16 15 C 0.02 1.23 5.46 84.65 0.46 1.69 16 16 N -0.92 -51.77 13.29 21.45 0.28 -51.48 16 17 Si 0.93 44.58 29.54 68.60 2.03 46.60 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 21 C -0.05 -1.46 0.56 -52.07 -0.03 -1.49 16 22 C -0.14 -3.28 8.06 71.98 0.58 -2.70 16 23 C -0.14 -3.50 8.21 71.98 0.59 -2.90 16 24 C -0.09 -2.01 3.89 29.56 0.12 -1.90 16 25 H 0.08 1.01 5.09 -2.39 -0.01 1.00 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.06 1.78 7.69 -2.38 -0.02 1.76 16 29 H 0.12 1.98 5.78 -2.39 -0.01 1.97 16 30 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.02 0.86 6.31 -2.38 -0.02 0.84 16 33 H 0.02 0.96 6.58 -2.39 -0.02 0.94 16 34 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.16 6.19 -2.38 -0.01 1.14 16 38 H 0.05 1.45 6.43 -2.38 -0.02 1.44 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.12 1.68 8.12 -2.39 -0.02 1.66 16 42 H 0.09 2.23 6.92 -2.39 -0.02 2.21 16 Total: -1.00 -70.14 337.80 7.99 -62.15 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.01 Total: 6.96 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 4.35 Total: -24.63 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.66 Total: -67.13 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.14 7.99 -62.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005328569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.943 kcal (2) G-P(sol) polarization free energy of solvation -70.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds