Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99678 * 2 1 4 4 C 1.50701 * 109.46999 * 269.99573 * 3 2 1 5 5 H 1.07996 * 119.99882 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00216 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00295 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99793 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47596 * 89.99827 * 8 6 4 10 10 H 1.48499 * 109.46917 * 209.99713 * 8 6 4 11 11 H 1.48502 * 109.47283 * 329.99403 * 8 6 4 12 12 C 1.34777 * 120.00192 * 179.97438 * 2 1 3 13 13 O 1.21556 * 119.99781 * 184.32476 * 12 2 1 14 14 C 1.47845 * 120.00026 * 4.32721 * 12 2 1 15 15 C 1.39582 * 120.14062 * 327.92303 * 14 12 2 16 16 C 1.37957 * 119.84744 * 180.25776 * 15 14 12 17 17 C 1.38360 * 120.14764 * 359.46863 * 16 15 14 18 18 C 1.50694 * 119.85577 * 180.27859 * 17 16 15 19 19 C 1.53006 * 109.47193 * 60.00345 * 18 17 16 20 20 C 1.53002 * 109.47462 * 180.02562 * 18 17 16 21 21 C 1.52996 * 109.47393 * 300.00244 * 18 17 16 22 22 C 1.38357 * 120.29203 * 0.25842 * 17 16 15 23 23 C 1.37966 * 120.14655 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.47735 * 274.80846 * 1 2 3 25 25 H 1.09005 * 109.47569 * 34.81381 * 1 2 3 26 26 H 1.09003 * 109.47209 * 154.81312 * 1 2 3 27 27 H 1.08999 * 109.47426 * 29.99970 * 3 2 1 28 28 H 1.09003 * 109.47115 * 149.99824 * 3 2 1 29 29 H 0.97000 * 120.00514 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.07626 * 0.02562 * 15 14 12 31 31 H 1.07996 * 119.92654 * 179.75042 * 16 15 14 32 32 H 1.08995 * 109.46902 * 59.99821 * 19 18 17 33 33 H 1.08999 * 109.47157 * 180.02562 * 19 18 17 34 34 H 1.08995 * 109.46809 * 300.00059 * 19 18 17 35 35 H 1.08996 * 109.46944 * 59.99761 * 20 18 17 36 36 H 1.08999 * 109.47673 * 180.02562 * 20 18 17 37 37 H 1.09004 * 109.47255 * 300.00347 * 20 18 17 38 38 H 1.08995 * 109.47012 * 59.99694 * 21 18 17 39 39 H 1.08999 * 109.47462 * 180.02562 * 21 18 17 40 40 H 1.09001 * 109.47124 * 300.00190 * 21 18 17 41 41 H 1.07999 * 119.93041 * 180.02562 * 22 17 16 42 42 H 1.07995 * 120.07387 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6729 7 7 3.3455 3.2573 -2.9127 8 14 3.7327 3.9294 -0.2531 9 1 5.1062 3.5085 0.1230 10 1 3.7475 5.3561 -0.6647 11 1 2.8267 3.7595 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3518 -1.1686 0.0799 14 6 1.4029 -2.4458 -0.0955 15 6 0.1275 -2.5638 0.4594 16 6 -0.5517 -3.7613 0.3709 17 6 0.0241 -4.8406 -0.2756 18 6 -0.7263 -6.1437 -0.3739 19 6 -2.0413 -5.9198 -1.1234 20 6 0.1243 -7.1664 -1.1298 21 6 -1.0238 -6.6683 1.0322 22 6 1.2856 -4.7286 -0.8327 23 6 1.9776 -3.5381 -0.7472 24 1 -0.3634 0.0861 1.0240 25 1 -0.3634 0.8437 -0.5867 26 1 -0.3634 -0.9300 -0.4374 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1385 0.5139 29 1 3.8223 4.0832 -3.0901 30 1 -0.3250 -1.7206 0.9601 31 1 -1.5368 -3.8552 0.8033 32 1 -1.8293 -5.5461 -2.1251 33 1 -2.5842 -6.8623 -1.1941 34 1 -2.6471 -5.1914 -0.5845 35 1 1.0609 -7.3258 -0.5955 36 1 -0.4186 -8.1089 -1.2013 37 1 0.3367 -6.7930 -2.1316 38 1 -1.6296 -5.9399 1.5711 39 1 -1.5661 -7.6111 0.9612 40 1 -0.0870 -6.8278 1.5662 41 1 1.7292 -5.5746 -1.3364 42 1 2.9620 -3.4518 -1.1828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -25.349852 kcal Electronic energy + Delta-G solvation = -21177.612033 eV Core-core repulsion = 18122.039012 eV Total energy + Delta-G solvation = -3055.573021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50899 -40.04421 -37.09979 -36.80225 -34.76729 -32.33685 -31.62230 -29.94801 -28.24725 -28.02434 -27.68364 -25.45231 -23.69432 -23.16553 -20.75911 -20.19522 -19.18309 -18.28072 -17.49625 -16.83331 -16.55558 -15.94797 -15.87605 -15.49700 -15.09227 -14.99195 -14.70987 -14.46796 -14.30248 -13.93947 -13.69527 -13.64987 -13.51406 -13.12270 -12.96084 -12.76675 -12.68749 -12.47922 -12.45337 -12.13846 -12.06067 -11.78981 -11.77221 -11.63752 -11.33899 -10.86851 -10.79111 -9.88786 -9.69307 -9.43805 -8.37399 -6.43759 -0.03489 0.42234 1.31049 1.35870 1.44393 1.81359 2.25441 2.28992 2.84105 2.96615 3.53092 3.72425 3.78468 3.99486 4.15259 4.16356 4.28516 4.39110 4.46902 4.54095 4.56056 4.71069 4.83427 4.84482 4.86373 4.88417 4.92381 4.97039 5.03968 5.08989 5.10082 5.14404 5.27917 5.36621 5.40668 5.42573 5.50166 5.51274 5.55096 5.67766 5.96945 6.19271 6.56808 6.58019 7.14782 7.29510 8.79723 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.003740 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.657923 B = 7483.956933 C = 7592.754456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.598 5.598 3 C 0.222 3.778 4 C -0.543 4.543 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.236 1.236 12 C 0.538 3.462 13 O -0.597 6.597 14 C -0.151 4.151 15 C -0.095 4.095 16 C -0.118 4.118 17 C -0.048 4.048 18 C -0.030 4.030 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.084 4.084 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.020 0.980 29 H 0.270 0.730 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.147 0.853 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 -20.178 9.116 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.327 5.327 3 C 0.100 3.900 4 C -0.581 4.581 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.159 1.159 12 C 0.328 3.672 13 O -0.480 6.480 14 C -0.154 4.154 15 C -0.113 4.113 16 C -0.136 4.136 17 C -0.048 4.048 18 C -0.030 4.030 19 C -0.195 4.195 20 C -0.205 4.205 21 C -0.194 4.194 22 C -0.146 4.146 23 C -0.103 4.103 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.165 0.835 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.595 -19.996 9.051 26.359 hybrid contribution 1.155 1.027 -0.319 1.578 sum -13.440 -18.970 8.733 24.834 Atomic orbital electron populations 1.22652 0.77865 1.04556 1.03142 1.47823 1.08514 1.05723 1.70642 1.19403 0.92892 0.82140 0.95531 1.21544 1.37333 1.06980 0.92247 0.95628 1.25885 0.95069 0.98858 0.98853 1.70046 1.42472 1.24518 1.21368 0.85669 0.79573 0.77731 0.79705 1.20211 1.19654 1.15890 1.19081 0.86885 0.85051 0.76187 1.90678 1.16197 1.88160 1.52952 1.19896 0.97154 0.93036 1.05357 1.22063 0.91778 0.99735 0.97715 1.21261 1.01300 0.91210 0.99783 1.20380 0.93558 0.96202 0.94664 1.19617 0.95351 0.90646 0.97406 1.21903 0.95146 1.02771 0.99722 1.22007 0.99855 0.98752 0.99914 1.21895 1.01743 1.01785 0.94021 1.21295 0.95305 0.96825 1.01208 1.21232 0.99338 0.92719 0.97029 0.89049 0.91563 0.88257 0.92504 0.96178 0.92109 0.82156 0.82209 0.93326 0.90779 0.91572 0.92409 0.90819 0.92573 0.91623 0.90785 0.93202 0.83508 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.80 8.81 127.77 1.13 2.92 16 2 N -0.60 -26.12 2.86 -854.56 -2.44 -28.56 16 3 C 0.22 11.32 4.28 85.63 0.37 11.69 16 4 C -0.54 -33.15 9.94 25.60 0.25 -32.89 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C 0.01 0.70 5.47 84.66 0.46 1.16 16 7 N -0.94 -60.85 13.96 21.45 0.30 -60.56 16 8 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 12 C 0.54 24.63 7.44 86.79 0.65 25.27 16 13 O -0.60 -33.09 16.32 -3.89 -0.06 -33.15 16 14 C -0.15 -5.30 5.47 -20.09 -0.11 -5.41 16 15 C -0.09 -2.37 7.44 22.53 0.17 -2.20 16 16 C -0.12 -2.25 8.69 22.23 0.19 -2.06 16 17 C -0.05 -0.94 4.77 -19.81 -0.09 -1.03 16 18 C -0.03 -0.41 0.85 -52.93 -0.05 -0.45 16 19 C -0.14 -1.60 8.29 71.98 0.60 -1.00 16 20 C -0.15 -1.87 7.13 71.98 0.51 -1.36 16 21 C -0.14 -1.52 8.28 71.98 0.60 -0.93 16 22 C -0.13 -3.13 8.96 22.23 0.20 -2.93 16 23 C -0.08 -2.77 9.60 22.53 0.22 -2.55 16 24 H 0.09 2.04 7.45 -2.39 -0.02 2.02 16 25 H 0.07 2.12 8.11 -2.38 -0.02 2.10 16 26 H 0.10 2.63 4.70 -2.39 -0.01 2.61 16 27 H 0.06 2.59 7.13 -2.39 -0.02 2.58 16 28 H 0.02 1.10 6.79 -2.39 -0.02 1.08 16 29 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 30 H 0.16 3.31 4.82 -2.91 -0.01 3.30 16 31 H 0.16 1.93 7.08 -2.91 -0.02 1.91 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.68 7.37 -2.39 -0.02 0.66 16 35 H 0.06 0.76 7.51 -2.39 -0.02 0.74 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.77 7.50 -2.38 -0.02 0.75 16 38 H 0.06 0.65 7.37 -2.39 -0.02 0.63 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.15 2.93 5.87 -2.91 -0.02 2.91 16 42 H 0.11 3.90 7.96 -2.91 -0.02 3.88 16 Total: -1.00 -80.71 333.53 5.71 -75.00 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.95 Total: 11.91 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.09 Total: -11.77 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -2.14 Total: -89.12 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.06 Total: -33.15 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -80.71 5.71 -75.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.651 kcal (2) G-P(sol) polarization free energy of solvation -80.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds