Wall clock time and date at job start Mon Mar 30 2020 02:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46860 * 2 1 4 4 C 1.50705 * 109.46918 * 119.99920 * 2 1 3 5 5 C 1.38061 * 120.04067 * 299.99755 * 4 2 1 6 6 C 1.38332 * 120.08243 * 180.02562 * 5 4 2 7 7 C 1.38333 * 120.16577 * 0.02659 * 6 5 4 8 8 C 1.38055 * 120.08363 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.04221 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.46999 * 333.49846 * 9 8 7 11 11 C 1.52997 * 109.46928 * 93.49842 * 9 8 7 12 12 C 1.39023 * 120.04040 * 119.72995 * 4 2 1 13 13 N 1.39529 * 120.08345 * 359.97438 * 12 4 2 14 14 C 1.34780 * 119.99748 * 119.00280 * 13 12 4 15 15 O 1.21735 * 120.00041 * 5.34695 * 14 13 12 16 16 C 1.46167 * 119.99619 * 185.34703 * 14 13 12 17 17 H 1.07999 * 120.00430 * 0.02562 * 16 14 13 18 18 C 1.40127 * 119.99851 * 179.97438 * 16 14 13 19 19 N 1.30643 * 119.99645 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00161 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46860 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47211 * 119.99881 * 20 18 16 23 23 H 1.48494 * 109.46934 * 240.00157 * 20 18 16 24 24 H 1.08999 * 109.47301 * 300.00194 * 1 2 3 25 25 H 1.09001 * 109.47486 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46838 * 60.00061 * 1 2 3 27 27 H 1.08999 * 109.47301 * 239.99806 * 2 1 3 28 28 H 1.09001 * 109.47565 * 60.00290 * 3 2 1 29 29 H 1.09000 * 109.47165 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47345 * 299.99628 * 3 2 1 31 31 H 1.08001 * 119.95794 * 0.03086 * 5 4 2 32 32 H 1.07996 * 119.91610 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.95752 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46935 * 213.49969 * 9 8 7 35 35 H 1.09005 * 109.47542 * 59.99618 * 10 9 8 36 36 H 1.08998 * 109.47564 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47347 * 299.99947 * 10 9 8 38 38 H 1.09001 * 109.47275 * 60.00205 * 11 9 8 39 39 H 1.08994 * 109.47036 * 179.97438 * 11 9 8 40 40 H 1.09005 * 109.47094 * 300.00189 * 11 9 8 41 41 H 0.96997 * 120.00529 * 299.00103 * 13 12 4 42 42 H 0.97003 * 119.99181 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6993 -0.2394 2.4849 6 6 2.1603 -0.8905 3.6149 7 6 2.9567 -2.0150 3.4930 8 6 3.2939 -2.4919 2.2421 9 6 4.1621 -3.7167 2.1104 10 6 5.0468 -3.8506 3.3514 11 6 3.2767 -4.9576 1.9790 12 6 2.8270 -1.8441 1.1040 13 7 3.1606 -2.3267 -0.1620 14 6 4.4529 -2.3935 -0.5387 15 8 5.3337 -2.1256 0.2578 16 6 4.7969 -2.7875 -1.9035 17 1 4.0155 -3.0248 -2.6103 18 6 6.1405 -2.8565 -2.2954 19 7 7.0856 -2.5681 -1.4408 20 14 6.5801 -3.3594 -4.0399 21 1 5.3366 -3.6313 -4.8048 22 1 7.3354 -2.2620 -4.6960 23 1 7.4175 -4.5852 -4.0055 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.0780 0.6384 2.5839 32 1 1.8979 -0.5200 4.5948 33 1 3.3151 -2.5205 4.3776 34 1 4.7904 -3.6232 1.2247 35 1 4.4185 -3.9441 4.2373 36 1 5.6744 -4.7367 3.2565 37 1 5.6775 -2.9665 3.4451 38 1 2.6464 -4.8622 1.0948 39 1 3.9046 -5.8434 1.8833 40 1 2.6484 -5.0511 2.8648 41 1 2.4625 -2.6141 -0.7710 42 1 8.0157 -2.6155 -1.7123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036240552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:48 Heat of formation + Delta-G solvation = -32.562070 kcal Electronic energy + Delta-G solvation = -22311.254893 eV Core-core repulsion = 19255.369127 eV Total energy + Delta-G solvation = -3055.885766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85093 -37.02665 -35.86120 -33.67800 -33.21762 -32.34021 -28.69838 -28.55363 -26.85741 -26.55257 -26.10563 -23.38567 -22.00668 -20.72727 -19.60549 -18.28282 -17.54447 -16.44956 -15.60686 -15.24536 -14.90711 -14.09590 -13.89752 -13.85386 -13.58232 -13.31904 -13.05767 -12.58930 -12.46802 -12.35315 -12.04915 -11.89124 -11.85597 -11.45309 -11.26695 -11.22087 -11.11888 -10.85459 -10.77233 -10.58262 -10.43637 -10.32100 -10.21272 -10.02035 -9.66458 -8.97691 -8.40446 -7.94393 -7.67898 -7.26974 -6.28733 -4.74530 1.97660 2.04626 3.07790 3.16842 3.20630 4.03514 4.31385 4.49798 4.79795 5.07859 5.19155 5.41657 5.50027 5.53641 5.61286 5.74340 5.77807 5.84346 5.86892 5.89985 5.96561 6.05858 6.14301 6.16047 6.21080 6.27714 6.35672 6.42064 6.51212 6.55919 6.59078 6.65875 6.73319 6.88681 7.05986 7.11378 7.24741 7.34243 7.44722 7.54845 7.82820 8.14519 8.32193 8.92283 9.34779 10.47901 10.65274 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.007274 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.487645 B = 3848.554793 C = 5043.043635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.138 4.138 4 C -0.101 4.101 5 C -0.117 4.117 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.060 4.060 9 C -0.082 4.082 10 C -0.134 4.134 11 C -0.132 4.132 12 C 0.183 3.817 13 N -0.714 5.714 14 C 0.553 3.447 15 O -0.556 6.556 16 C -0.541 4.541 17 H 0.069 0.931 18 C 0.089 3.911 19 N -0.761 5.761 20 Si 0.907 3.093 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.388 0.612 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 1.296 4.569 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 C -0.195 4.195 4 C -0.103 4.103 5 C -0.136 4.136 6 C -0.162 4.162 7 C -0.140 4.140 8 C -0.062 4.062 9 C -0.100 4.100 10 C -0.191 4.191 11 C -0.189 4.189 12 C 0.088 3.912 13 N -0.363 5.363 14 C 0.360 3.640 15 O -0.438 6.438 16 C -0.578 4.578 17 H 0.087 0.913 18 C -0.132 4.132 19 N -0.389 5.389 20 Si 0.731 3.269 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.223 0.777 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.124 1.503 5.126 10.572 hybrid contribution -0.090 -0.283 -1.032 1.074 sum -9.213 1.220 4.094 10.155 Atomic orbital electron populations 1.21836 0.95142 1.01489 1.01174 1.20001 0.94818 0.95984 0.96580 1.21781 1.01734 0.95195 1.00813 1.19921 1.01170 0.94582 0.94641 1.20621 1.01246 0.99904 0.91797 1.20892 1.00420 0.97185 0.97705 1.20913 0.99138 0.97089 0.96824 1.20008 0.97754 0.96515 0.91946 1.20623 0.96110 0.90774 1.02444 1.21768 0.99053 1.01393 0.96927 1.21720 0.99262 0.97253 1.00687 1.17469 0.95351 0.91798 0.86598 1.43880 1.09834 1.69430 1.13197 1.18207 0.79046 0.77813 0.88981 1.90613 1.46345 1.52864 1.54020 1.20862 0.92565 1.48896 0.95442 0.91261 1.25697 0.96124 0.93042 0.98338 1.70002 1.00390 1.34207 1.34302 0.86322 0.79175 0.78662 0.82699 1.18728 1.20130 1.20105 0.92929 0.92879 0.92890 0.89783 0.93097 0.92360 0.92969 0.87073 0.87184 0.86600 0.85222 0.93907 0.93354 0.92630 0.92967 0.93192 0.93998 0.77740 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.01 37.16 0.33 -1.43 16 2 C -0.06 -0.87 3.05 -91.77 -0.28 -1.15 16 3 C -0.14 -2.07 9.01 37.15 0.33 -1.73 16 4 C -0.10 -1.81 4.80 -104.39 -0.50 -2.31 16 5 C -0.12 -1.89 8.71 -39.61 -0.35 -2.24 16 6 C -0.14 -2.29 10.05 -39.51 -0.40 -2.69 16 7 C -0.12 -2.13 9.13 -39.61 -0.36 -2.50 16 8 C -0.06 -1.21 4.59 -104.39 -0.48 -1.69 16 9 C -0.08 -1.68 2.50 -91.77 -0.23 -1.91 16 10 C -0.13 -2.45 8.39 37.15 0.31 -2.13 16 11 C -0.13 -2.31 9.18 37.16 0.34 -1.97 16 12 C 0.18 3.77 5.71 -83.77 -0.48 3.29 16 13 N -0.71 -15.56 3.83 -11.20 -0.04 -15.61 16 14 C 0.55 14.73 6.37 -13.08 -0.08 14.65 16 15 O -0.56 -16.73 12.26 5.16 0.06 -16.67 16 16 C -0.54 -14.47 9.54 -35.69 -0.34 -14.81 16 17 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 18 C 0.09 2.36 5.50 -17.35 -0.10 2.27 16 19 N -0.76 -21.79 11.82 55.55 0.66 -21.14 16 20 Si 0.91 19.48 29.56 -169.99 -5.02 14.46 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H 0.05 0.62 7.39 -51.93 -0.38 0.23 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.46 6.69 -51.93 -0.35 1.11 16 28 H 0.05 0.68 7.39 -51.93 -0.38 0.30 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.52 7.10 -52.49 -0.37 1.15 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.12 1.82 6.08 -52.49 -0.32 1.50 16 34 H 0.13 3.29 4.06 -51.93 -0.21 3.08 16 35 H 0.04 0.66 6.55 -51.93 -0.34 0.32 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.39 7.51 8.48 -40.82 -0.35 7.17 16 42 H 0.27 7.03 8.29 -40.82 -0.34 6.70 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -30.82 335.52 -8.04 -38.85 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.48 Total: 11.40 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.27 Total: -16.35 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.61 Total: -36.74 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.06 Total: -16.67 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.82 -8.04 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036240552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.292 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds