Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46860 * 2 1 4 4 C 1.50705 * 109.46918 * 119.99920 * 2 1 3 5 5 C 1.38061 * 120.04067 * 299.99755 * 4 2 1 6 6 C 1.38332 * 120.08243 * 180.02562 * 5 4 2 7 7 C 1.38333 * 120.16577 * 0.02659 * 6 5 4 8 8 C 1.38055 * 120.08363 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.04221 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.46999 * 333.49846 * 9 8 7 11 11 C 1.52997 * 109.46928 * 93.49842 * 9 8 7 12 12 C 1.39023 * 120.04040 * 119.72995 * 4 2 1 13 13 N 1.39529 * 120.08345 * 359.97438 * 12 4 2 14 14 C 1.34780 * 119.99748 * 119.00280 * 13 12 4 15 15 O 1.21735 * 120.00041 * 5.34695 * 14 13 12 16 16 C 1.46167 * 119.99619 * 185.34703 * 14 13 12 17 17 H 1.07999 * 120.00430 * 0.02562 * 16 14 13 18 18 C 1.40127 * 119.99851 * 179.97438 * 16 14 13 19 19 N 1.30643 * 119.99645 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00161 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46860 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47211 * 119.99881 * 20 18 16 23 23 H 1.48494 * 109.46934 * 240.00157 * 20 18 16 24 24 H 1.08999 * 109.47301 * 300.00194 * 1 2 3 25 25 H 1.09001 * 109.47486 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46838 * 60.00061 * 1 2 3 27 27 H 1.08999 * 109.47301 * 239.99806 * 2 1 3 28 28 H 1.09001 * 109.47565 * 60.00290 * 3 2 1 29 29 H 1.09000 * 109.47165 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47345 * 299.99628 * 3 2 1 31 31 H 1.08001 * 119.95794 * 0.03086 * 5 4 2 32 32 H 1.07996 * 119.91610 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.95752 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.46935 * 213.49969 * 9 8 7 35 35 H 1.09005 * 109.47542 * 59.99618 * 10 9 8 36 36 H 1.08998 * 109.47564 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47347 * 299.99947 * 10 9 8 38 38 H 1.09001 * 109.47275 * 60.00205 * 11 9 8 39 39 H 1.08994 * 109.47036 * 179.97438 * 11 9 8 40 40 H 1.09005 * 109.47094 * 300.00189 * 11 9 8 41 41 H 0.96997 * 120.00529 * 299.00103 * 13 12 4 42 42 H 0.97003 * 119.99181 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6993 -0.2394 2.4849 6 6 2.1603 -0.8905 3.6149 7 6 2.9567 -2.0150 3.4930 8 6 3.2939 -2.4919 2.2421 9 6 4.1621 -3.7167 2.1104 10 6 5.0468 -3.8506 3.3514 11 6 3.2767 -4.9576 1.9790 12 6 2.8270 -1.8441 1.1040 13 7 3.1606 -2.3267 -0.1620 14 6 4.4529 -2.3935 -0.5387 15 8 5.3337 -2.1256 0.2578 16 6 4.7969 -2.7875 -1.9035 17 1 4.0155 -3.0248 -2.6103 18 6 6.1405 -2.8565 -2.2954 19 7 7.0856 -2.5681 -1.4408 20 14 6.5801 -3.3594 -4.0399 21 1 5.3366 -3.6313 -4.8048 22 1 7.3354 -2.2620 -4.6960 23 1 7.4175 -4.5852 -4.0055 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.0780 0.6384 2.5839 32 1 1.8979 -0.5200 4.5948 33 1 3.3151 -2.5205 4.3776 34 1 4.7904 -3.6232 1.2247 35 1 4.4185 -3.9441 4.2373 36 1 5.6744 -4.7367 3.2565 37 1 5.6775 -2.9665 3.4451 38 1 2.6464 -4.8622 1.0948 39 1 3.9046 -5.8434 1.8833 40 1 2.6484 -5.0511 2.8648 41 1 2.4625 -2.6141 -0.7710 42 1 8.0157 -2.6155 -1.7123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036240552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -49.745767 kcal Electronic energy + Delta-G solvation = -22312.000034 eV Core-core repulsion = 19255.369127 eV Total energy + Delta-G solvation = -3056.630907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35964 -38.82466 -37.24793 -35.23794 -34.83889 -34.34946 -30.26206 -29.95157 -28.04420 -28.00249 -27.95618 -24.74708 -23.59169 -22.17449 -21.29633 -19.67982 -19.42537 -17.99743 -17.51372 -16.86462 -16.30482 -15.87983 -15.34206 -15.18752 -14.99384 -14.70358 -14.50251 -14.23702 -14.13162 -13.86637 -13.30388 -13.25990 -13.11626 -12.99340 -12.86518 -12.73383 -12.63747 -12.55013 -12.14285 -12.07776 -12.01235 -11.87455 -11.52606 -11.43230 -11.21874 -10.90953 -10.11462 -9.72237 -9.32016 -8.88785 -8.29427 -6.85304 0.59129 0.65031 1.37812 1.38885 1.55395 2.22763 2.46917 2.94444 3.15959 3.63274 3.79906 3.93534 4.07587 4.21378 4.34500 4.37387 4.38559 4.53304 4.56752 4.65729 4.74830 4.77281 4.82778 4.90225 4.93278 4.99162 5.02654 5.08599 5.15535 5.19700 5.30670 5.35443 5.36882 5.41927 5.44625 5.62882 5.73076 5.79934 5.80275 6.02368 6.12249 6.22615 6.62613 6.86300 7.48007 8.49778 8.66821 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.007274 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.487645 B = 3848.554793 C = 5043.043635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.133 4.133 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.132 4.132 7 C -0.131 4.131 8 C -0.082 4.082 9 C -0.086 4.086 10 C -0.126 4.126 11 C -0.122 4.122 12 C 0.138 3.862 13 N -0.701 5.701 14 C 0.547 3.453 15 O -0.598 6.598 16 C -0.569 4.569 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.813 5.813 20 Si 0.991 3.009 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.269 1.269 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.031 0.969 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.396 0.604 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 1.873 5.112 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.106 4.106 5 C -0.136 4.136 6 C -0.150 4.150 7 C -0.149 4.149 8 C -0.084 4.084 9 C -0.104 4.104 10 C -0.184 4.184 11 C -0.180 4.180 12 C 0.045 3.955 13 N -0.350 5.350 14 C 0.354 3.646 15 O -0.484 6.484 16 C -0.606 4.606 17 H 0.101 0.899 18 C -0.181 4.181 19 N -0.442 5.442 20 Si 0.810 3.190 21 H -0.172 1.172 22 H -0.195 1.195 23 H -0.194 1.194 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.152 0.848 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.484 2.083 5.679 12.980 hybrid contribution 0.555 -0.410 -1.095 1.295 sum -10.929 1.672 4.584 11.969 Atomic orbital electron populations 1.21761 0.92189 1.01910 1.02821 1.20043 0.97181 0.95796 0.94635 1.21753 0.99337 0.95133 1.02845 1.20219 1.00218 0.93668 0.96524 1.21010 1.01054 1.00625 0.90876 1.21359 0.98421 0.95780 0.99479 1.21168 0.99531 0.97967 0.96242 1.20174 0.98228 0.96873 0.93130 1.20470 0.96317 0.92606 1.01004 1.21696 0.98917 1.00368 0.97378 1.21627 0.98957 0.96091 1.01282 1.17828 0.97889 0.93887 0.85928 1.43385 1.08443 1.68930 1.14195 1.18369 0.80131 0.77295 0.88854 1.90570 1.48142 1.54627 1.55056 1.21354 0.93626 1.49485 0.96114 0.89886 1.26837 0.95683 0.92307 1.03295 1.70163 1.01000 1.35917 1.37157 0.85068 0.79277 0.78317 0.76289 1.17176 1.19517 1.19398 0.91236 0.93106 0.91251 0.92385 0.90970 0.95990 0.91053 0.83773 0.83333 0.84752 0.90515 0.90607 0.93032 0.95022 0.94076 0.92783 0.91544 0.76870 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.01 71.98 0.65 -2.29 16 2 C -0.06 -1.78 3.05 -11.54 -0.04 -1.81 16 3 C -0.13 -3.83 9.01 71.98 0.65 -3.19 16 4 C -0.10 -3.66 4.80 -19.72 -0.09 -3.76 16 5 C -0.12 -3.44 8.71 22.25 0.19 -3.25 16 6 C -0.13 -3.78 10.05 22.31 0.22 -3.56 16 7 C -0.13 -4.39 9.13 22.25 0.20 -4.19 16 8 C -0.08 -3.35 4.59 -19.71 -0.09 -3.44 16 9 C -0.09 -3.63 2.50 -11.54 -0.03 -3.66 16 10 C -0.13 -4.67 8.39 71.98 0.60 -4.06 16 11 C -0.12 -4.32 9.18 71.98 0.66 -3.66 16 12 C 0.14 5.85 5.71 38.30 0.22 6.07 16 13 N -0.70 -32.12 3.83 -307.54 -1.18 -33.30 16 14 C 0.55 30.89 6.37 86.30 0.55 31.44 16 15 O -0.60 -38.44 12.26 -4.46 -0.05 -38.50 16 16 C -0.57 -31.72 9.54 24.79 0.24 -31.49 16 17 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 18 C 0.03 1.91 5.50 85.33 0.47 2.38 16 19 N -0.81 -48.88 11.82 21.85 0.26 -48.62 16 20 Si 0.99 40.77 29.56 68.60 2.03 42.80 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H 0.07 1.35 7.39 -2.39 -0.02 1.33 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 2.06 6.69 -2.39 -0.02 2.05 16 28 H 0.07 1.73 7.39 -2.39 -0.02 1.72 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.14 3.26 7.10 -2.91 -0.02 3.24 16 32 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.13 3.89 6.08 -2.91 -0.02 3.87 16 34 H 0.08 4.17 4.06 -2.39 -0.01 4.16 16 35 H 0.08 2.24 6.55 -2.38 -0.02 2.22 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.27 8.14 -2.38 -0.02 1.26 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.40 16.18 8.48 -92.71 -0.79 15.39 16 42 H 0.27 14.97 8.29 -92.71 -0.77 14.20 16 Total: -1.00 -72.00 335.52 5.69 -66.31 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.23 Total: 39.78 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.41 Total: -28.47 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -0.92 Total: -81.92 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.05 Total: -38.50 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -72.00 5.69 -66.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036240552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds