Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.53004 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47304 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47245 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 6 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.08996 * 109.46812 * 59.99873 * 1 2 3 25 25 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46885 * 300.00111 * 1 2 3 27 27 H 1.09003 * 109.46885 * 239.99889 * 2 1 3 28 28 H 1.09000 * 109.46800 * 120.00630 * 2 1 3 29 29 H 1.09003 * 109.47240 * 60.00107 * 3 2 1 30 30 H 1.08996 * 109.47289 * 299.99835 * 3 2 1 31 31 H 1.09003 * 109.46885 * 59.99889 * 4 3 2 32 32 H 1.09000 * 109.46800 * 300.00630 * 4 3 2 33 33 H 1.09003 * 109.47240 * 60.00107 * 5 4 3 34 34 H 1.08996 * 109.47289 * 299.99835 * 5 4 3 35 35 H 1.09003 * 109.46885 * 59.99889 * 6 5 4 36 36 H 1.09000 * 109.46800 * 300.00630 * 6 5 4 37 37 H 0.97004 * 120.00039 * 359.97438 * 7 6 5 38 38 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 39 39 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 41 41 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6102 2.8848 -0.0013 7 7 6.0985 4.2660 -0.0001 8 6 7.4236 4.5122 -0.0014 9 8 8.2134 3.5883 -0.0032 10 6 7.9166 5.9065 -0.0007 11 6 7.0079 6.9705 0.0008 12 6 7.4615 8.2772 0.0009 13 6 8.8123 8.5465 0.0000 14 6 9.7416 7.4893 -0.0015 15 6 11.1292 7.7624 -0.0018 16 1 11.4948 8.7021 0.3851 17 6 12.0287 6.8150 -0.5035 18 7 11.5996 5.8512 -1.2771 19 14 13.8420 6.9267 -0.0688 20 1 14.1239 6.0609 1.1044 21 1 14.6570 6.4745 -1.2249 22 1 14.1866 8.3333 0.2598 23 6 9.2831 6.1610 -0.0016 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9338 0.9284 0.8891 33 1 3.7172 3.3982 0.8905 34 1 3.7165 3.3992 -0.8895 35 1 5.9727 2.3716 -0.8920 36 1 5.9742 2.3702 0.8880 37 1 5.4682 5.0033 0.0010 38 1 5.9465 6.7703 0.0018 39 1 6.7519 9.0915 0.0024 40 1 9.1588 9.5694 -0.0003 41 1 12.2231 5.1947 -1.6252 42 1 9.9881 5.3429 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042196984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = -57.779972 kcal Electronic energy + Delta-G solvation = -20003.663120 eV Core-core repulsion = 16946.683824 eV Total energy + Delta-G solvation = -3056.979296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.18634 -37.18716 -36.61678 -34.64812 -33.72748 -32.18856 -30.18617 -29.42694 -27.99259 -25.33650 -24.21656 -22.16070 -21.41014 -21.20066 -20.84566 -19.38280 -17.68019 -16.24564 -16.18767 -15.49071 -15.09891 -15.04149 -14.64537 -14.12425 -13.95406 -13.70252 -13.36859 -13.10355 -12.87158 -12.63170 -12.48475 -12.32470 -11.77743 -11.69251 -11.59372 -11.17250 -11.15485 -11.08507 -10.97231 -10.80909 -10.72070 -10.68385 -10.48436 -10.00501 -9.67965 -9.21409 -8.98800 -8.61748 -7.61813 -7.51431 -6.79388 -4.40696 2.22952 2.82149 3.08323 3.11974 3.16292 3.71254 3.89340 3.93005 4.52391 4.63951 4.65697 4.77350 4.92780 5.04595 5.17575 5.28009 5.46264 5.52650 5.58022 5.60827 5.65756 5.70470 5.74656 5.80835 5.91759 5.95198 6.05634 6.10971 6.17929 6.22351 6.28586 6.72936 6.90504 7.00004 7.03435 7.22254 7.39180 7.71357 7.77451 7.93898 8.12030 8.20832 8.51733 8.81033 8.84487 8.98720 10.15337 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.002866 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.248723 B = 9767.277596 C =10510.466116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.131 4.131 6 C 0.121 3.879 7 N -0.738 5.738 8 C 0.562 3.438 9 O -0.547 6.547 10 C -0.128 4.128 11 C -0.219 4.219 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.093 4.093 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.284 0.716 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 -7.042 1.676 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.392 5.392 8 C 0.353 3.647 9 O -0.426 6.426 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.095 3.905 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.113 4.113 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.734 -7.933 1.519 16.803 hybrid contribution 0.414 0.368 0.040 0.556 sum -14.320 -7.565 1.559 16.270 Atomic orbital electron populations 1.21782 0.96032 1.01471 1.01773 1.21546 0.95724 0.97070 1.02058 1.21619 0.95310 0.96678 1.02117 1.21517 0.95297 0.96167 1.02545 1.21803 0.94695 0.97681 1.02684 1.21243 0.93061 0.84055 1.01984 1.45966 1.07658 1.07953 1.77648 1.18856 0.81235 0.89992 0.74633 1.90690 1.55466 1.46438 1.49966 1.19488 0.95200 0.90222 1.08212 1.20340 0.96100 0.92645 1.14777 1.20432 0.95260 0.95002 1.00930 1.21093 0.92586 0.97759 1.11794 1.17611 0.93342 0.90736 0.88765 1.19602 0.90773 1.02578 1.35900 0.90039 1.25979 1.01897 0.94130 0.92663 1.69797 1.37856 1.11593 1.21463 0.86253 0.81347 0.79791 0.79091 1.19204 1.20198 1.18524 1.21641 0.92457 0.97926 0.99268 0.92795 0.92910 0.92796 0.92036 0.92046 0.91985 0.91978 0.91655 0.91681 0.91373 0.91362 0.91978 0.92021 0.76629 0.89252 0.88906 0.88616 0.90444 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 4 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 5 C -0.13 -1.32 5.33 -26.73 -0.14 -1.46 16 6 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 7 N -0.74 -12.50 5.51 -61.24 -0.34 -12.84 16 8 C 0.56 12.63 7.77 -12.31 -0.10 12.53 16 9 O -0.55 -14.12 16.33 5.33 0.09 -14.03 16 10 C -0.13 -3.08 5.87 -105.04 -0.62 -3.69 16 11 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.11 10.01 -39.73 -0.40 -2.50 16 13 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 14 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 15 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 16 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 17 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.78 -20.97 10.96 55.55 0.61 -20.36 16 19 Si 0.91 18.93 29.60 -169.99 -5.03 13.90 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.09 -2.51 8.23 -38.44 -0.32 -2.83 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 5.79 6.49 -40.82 -0.26 5.52 16 38 H 0.09 1.56 6.38 -52.48 -0.33 1.22 16 39 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 41 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 42 H 0.13 3.91 5.75 -52.49 -0.30 3.60 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -29.86 348.74 -9.65 -39.50 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.79 Total: 7.93 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -3.44 Total: -19.36 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.27 Total: -33.19 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.86 -9.65 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042196984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.277 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds