Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 C 1.53004 * 109.47304 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47304 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47304 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47245 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99821 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99932 * 359.97438 * 8 7 6 10 10 C 1.47887 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.08996 * 109.46812 * 59.99873 * 1 2 3 25 25 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46885 * 300.00111 * 1 2 3 27 27 H 1.09003 * 109.46885 * 239.99889 * 2 1 3 28 28 H 1.09000 * 109.46800 * 120.00630 * 2 1 3 29 29 H 1.09003 * 109.47240 * 60.00107 * 3 2 1 30 30 H 1.08996 * 109.47289 * 299.99835 * 3 2 1 31 31 H 1.09003 * 109.46885 * 59.99889 * 4 3 2 32 32 H 1.09000 * 109.46800 * 300.00630 * 4 3 2 33 33 H 1.09003 * 109.47240 * 60.00107 * 5 4 3 34 34 H 1.08996 * 109.47289 * 299.99835 * 5 4 3 35 35 H 1.09003 * 109.46885 * 59.99889 * 6 5 4 36 36 H 1.09000 * 109.46800 * 300.00630 * 6 5 4 37 37 H 0.97004 * 120.00039 * 359.97438 * 7 6 5 38 38 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 39 39 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 40 40 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 41 41 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8848 0.0000 6 6 5.6102 2.8848 -0.0013 7 7 6.0985 4.2660 -0.0001 8 6 7.4236 4.5122 -0.0014 9 8 8.2134 3.5883 -0.0032 10 6 7.9166 5.9065 -0.0007 11 6 7.0079 6.9705 0.0008 12 6 7.4615 8.2772 0.0009 13 6 8.8123 8.5465 0.0000 14 6 9.7416 7.4893 -0.0015 15 6 11.1292 7.7624 -0.0018 16 1 11.4948 8.7021 0.3851 17 6 12.0287 6.8150 -0.5035 18 7 11.5996 5.8512 -1.2771 19 14 13.8420 6.9267 -0.0688 20 1 14.1239 6.0609 1.1044 21 1 14.6570 6.4745 -1.2249 22 1 14.1866 8.3333 0.2598 23 6 9.2831 6.1610 -0.0016 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9287 -0.8909 32 1 3.9338 0.9284 0.8891 33 1 3.7172 3.3982 0.8905 34 1 3.7165 3.3992 -0.8895 35 1 5.9727 2.3716 -0.8920 36 1 5.9742 2.3702 0.8880 37 1 5.4682 5.0033 0.0010 38 1 5.9465 6.7703 0.0018 39 1 6.7519 9.0915 0.0024 40 1 9.1588 9.5694 -0.0003 41 1 12.2231 5.1947 -1.6252 42 1 9.9881 5.3429 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042196984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = -74.146259 kcal Electronic energy + Delta-G solvation = -20004.372816 eV Core-core repulsion = 16946.683824 eV Total energy + Delta-G solvation = -3057.688992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90403 -38.88435 -37.59153 -35.89883 -35.54172 -33.28526 -31.87356 -31.27589 -28.98133 -27.19664 -25.33535 -23.62617 -22.80695 -22.28720 -21.82484 -21.04300 -19.47342 -17.93981 -17.15795 -17.05025 -16.73278 -16.39769 -16.15108 -15.43342 -15.15361 -15.05880 -14.70061 -14.40010 -14.26306 -13.92990 -13.86759 -13.46873 -13.15548 -12.97158 -12.82018 -12.57553 -12.48894 -12.39752 -12.17625 -11.90396 -11.79689 -11.67790 -11.54718 -11.48608 -11.33168 -11.09285 -10.76677 -10.15313 -9.47629 -9.39157 -8.67352 -6.38875 0.37298 1.00159 1.35768 1.47475 1.50862 2.09358 2.18669 2.26789 2.78041 3.69426 3.76421 3.97284 3.98283 4.13996 4.21502 4.34665 4.42999 4.47141 4.54535 4.59658 4.71304 4.83135 4.90622 4.90962 4.94005 5.07227 5.08331 5.11110 5.19119 5.21881 5.26058 5.30983 5.38003 5.48039 5.49122 5.52177 5.54899 5.86388 5.92212 6.04981 6.28204 6.51336 6.69154 6.87154 6.94238 7.30954 8.29561 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.002866 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.248723 B = 9767.277596 C =10510.466116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.116 4.116 5 C -0.118 4.118 6 C 0.117 3.883 7 N -0.713 5.713 8 C 0.557 3.443 9 O -0.592 6.592 10 C -0.140 4.140 11 C -0.197 4.197 12 C -0.096 4.096 13 C -0.217 4.217 14 C 0.065 3.935 15 C -0.497 4.497 16 H 0.085 0.915 17 C 0.027 3.973 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.249 1.249 23 C -0.133 4.133 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 -6.078 2.025 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.006 4.006 7 N -0.366 5.366 8 C 0.347 3.653 9 O -0.474 6.474 10 C -0.143 4.143 11 C -0.217 4.217 12 C -0.113 4.113 13 C -0.237 4.237 14 C 0.063 3.937 15 C -0.526 4.526 16 H 0.103 0.897 17 C -0.188 4.188 18 N -0.451 5.451 19 Si 0.805 3.195 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.173 1.173 23 C -0.154 4.154 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.252 0.748 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.403 -6.946 1.870 18.831 hybrid contribution 0.980 0.076 -0.058 0.985 sum -16.422 -6.870 1.811 17.893 Atomic orbital electron populations 1.21779 0.95442 1.01840 1.01968 1.21555 0.96261 0.96786 1.01960 1.21576 0.94138 0.97054 1.02505 1.21504 0.96238 0.95204 1.02425 1.21740 0.91059 0.98880 1.03866 1.21462 0.95979 0.82055 1.01137 1.45786 1.05804 1.09904 1.75148 1.18799 0.82793 0.89008 0.74739 1.90664 1.57106 1.47381 1.52293 1.19800 0.94726 0.92163 1.07626 1.20870 0.98002 0.91719 1.11099 1.20939 0.94961 0.96523 0.98916 1.21418 0.93673 0.97719 1.10858 1.17968 0.94402 0.91448 0.89867 1.19876 0.91601 1.03488 1.37617 0.89714 1.26892 1.06551 0.93389 0.91920 1.69899 1.39443 1.12754 1.23051 0.85160 0.75450 0.80183 0.78746 1.19224 1.19331 1.17252 1.21451 0.93590 0.97340 1.02998 0.92624 0.92527 0.92564 0.92219 0.92145 0.91515 0.91622 0.91945 0.91816 0.90036 0.90230 0.93070 0.92801 0.74813 0.84402 0.84181 0.87266 0.90318 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.58 5.93 30.59 0.18 -1.40 16 3 C -0.12 -1.47 5.21 30.59 0.16 -1.31 16 4 C -0.12 -1.77 5.21 30.59 0.16 -1.61 16 5 C -0.12 -2.03 5.33 30.59 0.16 -1.87 16 6 C 0.12 3.14 5.67 86.38 0.49 3.63 16 7 N -0.71 -22.81 5.51 -465.93 -2.57 -25.38 16 8 C 0.56 25.12 7.77 86.80 0.67 25.79 16 9 O -0.59 -31.84 16.33 -3.85 -0.06 -31.90 16 10 C -0.14 -6.73 5.87 -20.13 -0.12 -6.85 16 11 C -0.20 -7.75 9.55 22.70 0.22 -7.53 16 12 C -0.10 -3.77 10.01 22.17 0.22 -3.55 16 13 C -0.22 -10.19 9.78 22.77 0.22 -9.96 16 14 C 0.07 3.60 5.57 -21.32 -0.12 3.49 16 15 C -0.50 -27.36 9.05 23.47 0.21 -27.15 16 16 H 0.08 4.39 7.91 -2.91 -0.02 4.37 16 17 C 0.03 1.45 5.14 85.25 0.44 1.89 16 18 N -0.83 -46.88 10.96 21.82 0.24 -46.64 16 19 Si 0.98 40.17 29.60 68.60 2.03 42.20 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 23 C -0.13 -7.54 8.23 23.01 0.19 -7.35 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 10.44 6.49 -92.71 -0.60 9.84 16 38 H 0.14 4.02 6.38 -2.91 -0.02 4.01 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 41 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 42 H 0.10 6.16 5.75 -2.91 -0.02 6.14 16 Total: -1.00 -69.37 348.74 3.84 -65.53 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.39 Total: 30.93 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 3.81 Total: -34.74 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -2.33 Total: -72.02 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.06 Total: -31.90 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -69.37 3.84 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042196984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.613 kcal (2) G-P(sol) polarization free energy of solvation -69.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds