Wall clock time and date at job start Mon Mar 30 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47437 * 2 1 4 4 C 1.38360 * 119.85522 * 269.73077 * 3 2 1 5 5 C 1.37957 * 120.14085 * 179.72228 * 4 3 2 6 6 C 1.39568 * 119.85703 * 0.54817 * 5 4 3 7 7 C 1.47841 * 120.14685 * 179.70634 * 6 5 4 8 8 O 1.21555 * 120.00293 * 137.51636 * 7 6 5 9 9 N 1.34776 * 119.99862 * 317.51275 * 7 6 5 10 10 C 1.46508 * 119.99982 * 212.31783 * 9 7 6 11 11 C 1.50697 * 109.47065 * 90.00369 * 10 9 7 12 12 H 1.08004 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00000 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46716 * 90.00235 * 15 13 11 17 17 H 1.48499 * 109.47276 * 210.00269 * 15 13 11 18 18 H 1.48503 * 109.46967 * 330.00422 * 15 13 11 19 19 C 1.46498 * 120.00217 * 32.31831 * 9 7 6 20 20 C 1.52998 * 109.46937 * 301.61134 * 19 9 7 21 21 C 1.53003 * 109.47043 * 61.60755 * 19 9 7 22 22 C 1.39580 * 119.71042 * 359.72677 * 6 5 4 23 23 C 1.37954 * 119.85309 * 0.02562 * 22 6 5 24 24 H 1.09000 * 109.47210 * 59.99609 * 1 2 3 25 25 H 1.09003 * 109.47138 * 299.99600 * 1 2 3 26 26 H 1.09001 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47210 * 120.00391 * 2 1 3 28 28 H 1.09006 * 109.46966 * 239.99897 * 2 1 3 29 29 H 1.08001 * 119.92269 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.06745 * 180.25093 * 5 4 3 31 31 H 1.09004 * 109.46789 * 209.99864 * 10 9 7 32 32 H 1.08997 * 109.46890 * 330.00032 * 10 9 7 33 33 H 0.97002 * 119.99888 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47665 * 181.60651 * 19 9 7 35 35 H 1.09003 * 109.47256 * 13.48161 * 20 19 9 36 36 H 1.09002 * 109.47587 * 133.48196 * 20 19 9 37 37 H 1.09003 * 109.47414 * 253.47860 * 20 19 9 38 38 H 1.08996 * 109.47026 * 103.64761 * 21 19 9 39 39 H 1.09002 * 109.47491 * 223.65125 * 21 19 9 40 40 H 1.09008 * 109.47208 * 343.65207 * 21 19 9 41 41 H 1.07999 * 120.07454 * 179.97438 * 22 6 5 42 42 H 1.07996 * 119.92957 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7218 3.3708 -1.2069 6 6 2.9555 4.0316 0.0001 7 6 3.4488 5.4253 0.0001 8 8 2.9813 6.2355 0.7764 9 7 4.4169 5.7975 -0.8605 10 6 5.3830 6.8291 -0.4747 11 6 6.5713 6.1816 0.1885 12 1 6.6034 5.1090 0.3109 13 6 7.6173 6.9586 0.6392 14 7 7.5779 8.2647 0.4906 15 14 9.0900 6.1561 1.4619 16 1 10.1084 5.8198 0.4348 17 1 9.6765 7.0949 2.4518 18 1 8.6557 4.9156 2.1532 19 6 4.5032 5.1705 -2.1817 20 6 4.6728 3.6587 -2.0187 21 6 3.2222 5.4582 -2.9674 22 6 2.7219 3.3707 1.2071 23 6 2.2625 2.0699 1.2001 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 2.0898 1.5544 -2.1332 30 1 2.9009 3.8764 -2.1442 31 1 5.7120 7.3690 -1.3627 32 1 4.9133 7.5249 0.2204 33 1 8.3141 8.8112 0.8073 34 1 5.3591 5.5761 -2.7212 35 1 4.4517 3.3772 -0.9891 36 1 3.9887 3.1417 -2.6916 37 1 5.6988 3.3801 -2.2593 38 1 3.4174 6.2322 -3.7096 39 1 2.8916 4.5488 -3.4691 40 1 2.4450 5.7988 -2.2831 41 1 2.9012 3.8762 2.1445 42 1 2.0818 1.5572 2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:45 Heat of formation + Delta-G solvation = 55.879434 kcal Electronic energy + Delta-G solvation = -21953.142637 eV Core-core repulsion = 18901.091983 eV Total energy + Delta-G solvation = -3052.050655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91457 -38.17816 -36.46420 -34.25438 -33.08804 -31.72076 -30.24623 -29.59542 -27.16757 -26.77595 -24.53020 -23.05338 -22.65181 -21.52658 -21.04165 -18.43533 -16.78802 -16.42820 -15.99096 -15.72886 -14.95869 -14.81609 -14.50816 -14.18496 -13.95904 -13.69072 -13.50423 -13.30926 -12.90342 -12.61614 -12.24994 -12.23606 -12.14733 -11.73981 -11.48070 -11.24916 -11.18989 -11.06100 -10.98718 -10.85875 -10.62094 -10.55320 -10.14229 -10.04964 -9.64522 -9.09740 -8.61268 -8.46176 -8.02031 -7.55802 -6.06557 -4.12944 1.25112 1.63617 3.23454 3.27942 3.34863 3.39247 3.84245 4.06436 4.41672 4.70697 4.81976 5.01546 5.02640 5.08828 5.19118 5.24629 5.27340 5.31281 5.42673 5.49121 5.59524 5.65336 5.73139 5.79735 5.86701 5.91639 5.92357 6.02910 6.12342 6.18751 6.23653 6.38034 6.46640 6.57498 6.70204 6.72875 7.08726 7.14437 7.43295 7.61067 7.91914 8.20955 8.42365 8.81852 9.00017 9.52972 11.00668 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.005176 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.140691 B = 5408.086846 C = 5847.989463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.061 4.061 4 C -0.162 4.162 5 C -0.085 4.085 6 C -0.150 4.150 7 C 0.571 3.429 8 O -0.533 6.533 9 N -0.609 5.609 10 C 0.248 3.752 11 C -0.533 4.533 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.137 3.863 20 C -0.200 4.200 21 C -0.178 4.178 22 C -0.059 4.059 23 C -0.145 4.145 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.173 0.827 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -14.823 -6.178 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.061 4.061 4 C -0.180 4.180 5 C -0.102 4.102 6 C -0.154 4.154 7 C 0.359 3.641 8 O -0.410 6.410 9 N -0.341 5.341 10 C 0.129 3.871 11 C -0.572 4.572 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.531 5.531 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.032 3.968 20 C -0.256 4.256 21 C -0.236 4.236 22 C -0.077 4.077 23 C -0.163 4.163 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.189 0.811 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.901 -14.172 -5.718 18.772 hybrid contribution 1.131 -0.430 0.508 1.312 sum -9.770 -14.602 -5.210 18.325 Atomic orbital electron populations 1.21738 0.94797 1.01430 1.02356 1.20559 0.96116 0.92929 1.02690 1.19954 0.97179 0.95718 0.93294 1.20795 1.04546 0.95235 0.97437 1.22950 0.91559 0.95551 1.00145 1.20274 1.04857 0.95957 0.94267 1.18075 0.78979 0.86515 0.80533 1.90698 1.55421 1.52952 1.41917 1.48008 1.30792 1.41767 1.13573 1.19332 0.85582 0.85709 0.96436 1.21534 1.02815 0.93899 1.38949 0.92309 1.24941 0.98465 0.94766 0.95828 1.69939 1.32438 1.03981 1.46770 0.86514 0.82471 0.79241 0.79322 1.20568 1.21060 1.19879 1.20998 0.98160 0.92971 0.84659 1.23734 1.01615 0.95963 1.04289 1.22713 0.98294 1.01585 1.00992 1.21152 0.95067 0.94061 0.97461 1.20822 1.03100 0.94947 0.97444 0.92515 0.92505 0.92614 0.91146 0.91122 0.86153 0.81055 0.94977 0.93745 0.92657 0.88578 0.88452 0.91288 0.92561 0.91539 0.91355 0.91701 0.85533 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.09 -0.78 6.06 -27.89 -0.17 -0.95 16 3 C -0.06 -0.75 5.14 -104.53 -0.54 -1.28 16 4 C -0.16 -1.99 9.42 -39.64 -0.37 -2.36 16 5 C -0.08 -1.22 4.88 -39.19 -0.19 -1.41 16 6 C -0.15 -2.70 4.26 -104.97 -0.45 -3.15 16 7 C 0.57 12.65 5.87 -12.33 -0.07 12.57 16 8 O -0.53 -13.77 16.79 5.32 0.09 -13.68 16 9 N -0.61 -13.24 2.38 -168.58 -0.40 -13.64 16 10 C 0.25 6.54 5.32 -5.19 -0.03 6.51 16 11 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 12 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 15 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.14 2.29 3.27 -67.93 -0.22 2.07 16 20 C -0.20 -2.94 7.71 37.16 0.29 -2.66 16 21 C -0.18 -2.38 8.36 37.16 0.31 -2.07 16 22 C -0.06 -0.99 9.67 -39.18 -0.38 -1.37 16 23 C -0.15 -1.98 9.68 -39.64 -0.38 -2.37 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.17 2.24 1.07 -53.67 -0.06 2.18 16 31 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 32 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.10 1.63 7.81 -51.93 -0.41 1.22 16 35 H 0.10 1.65 3.99 -61.53 -0.25 1.41 16 36 H 0.07 0.79 5.23 -51.93 -0.27 0.52 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.70 6.18 -51.93 -0.32 0.38 16 40 H 0.06 0.98 6.82 -51.92 -0.35 0.63 16 41 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 331.25 15.07 4.99 4.99 Total: -1.00 -32.35 331.25 -8.08 -40.43 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.22 Total: 1.83 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.26 Total: -10.93 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.34 Total: -39.31 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.35 -8.08 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.312 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds