Wall clock time and date at job start Mon Mar 30 2020 02:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47437 * 2 1 4 4 C 1.38360 * 119.85522 * 269.73077 * 3 2 1 5 5 C 1.37957 * 120.14085 * 179.72228 * 4 3 2 6 6 C 1.39568 * 119.85703 * 0.54817 * 5 4 3 7 7 C 1.47841 * 120.14685 * 179.70634 * 6 5 4 8 8 O 1.21555 * 120.00293 * 137.51636 * 7 6 5 9 9 N 1.34776 * 119.99862 * 317.51275 * 7 6 5 10 10 C 1.46508 * 119.99982 * 212.31783 * 9 7 6 11 11 C 1.50697 * 109.47065 * 90.00369 * 10 9 7 12 12 H 1.08004 * 120.00101 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00000 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46716 * 90.00235 * 15 13 11 17 17 H 1.48499 * 109.47276 * 210.00269 * 15 13 11 18 18 H 1.48503 * 109.46967 * 330.00422 * 15 13 11 19 19 C 1.46498 * 120.00217 * 32.31831 * 9 7 6 20 20 C 1.52998 * 109.46937 * 301.61134 * 19 9 7 21 21 C 1.53003 * 109.47043 * 61.60755 * 19 9 7 22 22 C 1.39580 * 119.71042 * 359.72677 * 6 5 4 23 23 C 1.37954 * 119.85309 * 0.02562 * 22 6 5 24 24 H 1.09000 * 109.47210 * 59.99609 * 1 2 3 25 25 H 1.09003 * 109.47138 * 299.99600 * 1 2 3 26 26 H 1.09001 * 109.47108 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47210 * 120.00391 * 2 1 3 28 28 H 1.09006 * 109.46966 * 239.99897 * 2 1 3 29 29 H 1.08001 * 119.92269 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.06745 * 180.25093 * 5 4 3 31 31 H 1.09004 * 109.46789 * 209.99864 * 10 9 7 32 32 H 1.08997 * 109.46890 * 330.00032 * 10 9 7 33 33 H 0.97002 * 119.99888 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47665 * 181.60651 * 19 9 7 35 35 H 1.09003 * 109.47256 * 13.48161 * 20 19 9 36 36 H 1.09002 * 109.47587 * 133.48196 * 20 19 9 37 37 H 1.09003 * 109.47414 * 253.47860 * 20 19 9 38 38 H 1.08996 * 109.47026 * 103.64761 * 21 19 9 39 39 H 1.09002 * 109.47491 * 223.65125 * 21 19 9 40 40 H 1.09008 * 109.47208 * 343.65207 * 21 19 9 41 41 H 1.07999 * 120.07454 * 179.97438 * 22 6 5 42 42 H 1.07996 * 119.92957 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2673 2.0683 -1.2000 5 6 2.7218 3.3708 -1.2069 6 6 2.9555 4.0316 0.0001 7 6 3.4488 5.4253 0.0001 8 8 2.9813 6.2355 0.7764 9 7 4.4169 5.7975 -0.8605 10 6 5.3830 6.8291 -0.4747 11 6 6.5713 6.1816 0.1885 12 1 6.6034 5.1090 0.3109 13 6 7.6173 6.9586 0.6392 14 7 7.5779 8.2647 0.4906 15 14 9.0900 6.1561 1.4619 16 1 10.1084 5.8198 0.4348 17 1 9.6765 7.0949 2.4518 18 1 8.6557 4.9156 2.1532 19 6 4.5032 5.1705 -2.1817 20 6 4.6728 3.6587 -2.0187 21 6 3.2222 5.4582 -2.9674 22 6 2.7219 3.3707 1.2071 23 6 2.2625 2.0699 1.2001 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 2.0898 1.5544 -2.1332 30 1 2.9009 3.8764 -2.1442 31 1 5.7120 7.3690 -1.3627 32 1 4.9133 7.5249 0.2204 33 1 8.3141 8.8112 0.8073 34 1 5.3591 5.5761 -2.7212 35 1 4.4517 3.3772 -0.9891 36 1 3.9887 3.1417 -2.6916 37 1 5.6988 3.3801 -2.2593 38 1 3.4174 6.2322 -3.7096 39 1 2.8916 4.5488 -3.4691 40 1 2.4450 5.7988 -2.2831 41 1 2.9012 3.8762 2.1445 42 1 2.0818 1.5572 2.1332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:45 Heat of formation + Delta-G solvation = 36.921835 kcal Electronic energy + Delta-G solvation = -21953.964700 eV Core-core repulsion = 18901.091983 eV Total energy + Delta-G solvation = -3052.872718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.27451 -39.54541 -38.00260 -35.68765 -34.69004 -33.38029 -31.48035 -30.69511 -29.05879 -27.96401 -25.88666 -24.39640 -24.18471 -22.82142 -22.15298 -19.84393 -18.69191 -18.12102 -17.54240 -16.92394 -16.50179 -16.38524 -15.81024 -15.60644 -15.22763 -14.90632 -14.64067 -14.38840 -14.21342 -13.98674 -13.76673 -13.49025 -13.40759 -13.22092 -13.09346 -12.78477 -12.66089 -12.37372 -12.20398 -12.15140 -11.96443 -11.91652 -11.70144 -11.63865 -11.15442 -10.82345 -10.67887 -9.73501 -9.40027 -9.13211 -8.25183 -6.42523 0.05199 0.53314 1.34412 1.37208 1.47484 1.65640 2.25047 2.39478 2.83769 3.03168 3.60246 3.83253 3.85662 3.93523 4.01882 4.12848 4.29833 4.35860 4.46631 4.58674 4.62373 4.66442 4.69678 4.73226 4.85190 4.95843 5.00035 5.04521 5.06908 5.15588 5.16273 5.16951 5.21389 5.37241 5.42424 5.46747 5.54061 5.57606 5.71764 5.88156 6.02785 6.05207 6.65626 6.73446 7.15519 7.32684 8.81176 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.005176 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.140691 B = 5408.086846 C = 5847.989463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.050 4.050 4 C -0.153 4.153 5 C -0.077 4.077 6 C -0.180 4.180 7 C 0.563 3.437 8 O -0.592 6.592 9 N -0.613 5.613 10 C 0.263 3.737 11 C -0.548 4.548 12 H 0.056 0.944 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.970 3.030 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.272 1.272 19 C 0.124 3.876 20 C -0.194 4.194 21 C -0.172 4.172 22 C -0.082 4.082 23 C -0.146 4.146 24 H 0.057 0.943 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.164 0.836 30 H 0.186 0.814 31 H 0.022 0.978 32 H -0.005 1.005 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.043 0.957 41 H 0.101 0.899 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -18.967 -8.153 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.170 4.170 5 C -0.094 4.094 6 C -0.183 4.183 7 C 0.354 3.646 8 O -0.474 6.474 9 N -0.345 5.345 10 C 0.142 3.858 11 C -0.586 4.586 12 H 0.074 0.926 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.793 3.207 16 H -0.187 1.187 17 H -0.205 1.205 18 H -0.197 1.197 19 C 0.021 3.979 20 C -0.250 4.250 21 C -0.229 4.229 22 C -0.101 4.101 23 C -0.164 4.164 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.182 0.818 30 H 0.202 0.798 31 H 0.040 0.960 32 H 0.013 0.987 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.192 -18.352 -7.739 22.846 hybrid contribution 1.152 0.835 1.110 1.804 sum -10.040 -17.517 -6.629 21.250 Atomic orbital electron populations 1.21739 0.94005 1.02567 1.01962 1.20654 0.96598 0.90591 1.04252 1.20424 0.94851 0.97181 0.92526 1.21264 1.02471 0.94029 0.99265 1.23060 0.90987 0.96407 0.98914 1.19967 1.08188 0.93708 0.96469 1.18875 0.78308 0.88117 0.79291 1.90639 1.57675 1.54945 1.44097 1.48003 1.29679 1.41103 1.15755 1.18804 0.85940 0.86279 0.94741 1.21741 1.03546 0.93791 1.39524 0.92617 1.25888 1.01596 0.95289 0.96197 1.70067 1.33579 1.05487 1.47535 0.85388 0.78667 0.78101 0.78511 1.18660 1.20531 1.19658 1.21395 0.99917 0.94340 0.82216 1.23693 1.02920 0.94256 1.04161 1.22663 0.95645 1.04190 1.00394 1.21141 0.96943 0.95759 0.96306 1.21035 1.02438 0.93498 0.99449 0.92404 0.93497 0.90775 0.90319 0.88961 0.81834 0.79754 0.95986 0.98727 0.92278 0.89334 0.90423 0.86767 0.92518 0.90440 0.86789 0.93840 0.88086 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.89 71.98 0.71 -1.06 16 2 C -0.08 -1.12 6.06 29.85 0.18 -0.94 16 3 C -0.05 -1.02 5.14 -19.81 -0.10 -1.12 16 4 C -0.15 -3.04 9.42 22.23 0.21 -2.83 16 5 C -0.08 -2.02 4.88 22.52 0.11 -1.92 16 6 C -0.18 -6.64 4.26 -20.09 -0.09 -6.72 16 7 C 0.56 26.68 5.87 86.79 0.51 27.19 16 8 O -0.59 -33.57 16.79 -3.89 -0.07 -33.64 16 9 N -0.61 -28.20 2.38 -805.53 -1.92 -30.11 16 10 C 0.26 14.91 5.32 85.63 0.46 15.36 16 11 C -0.55 -32.15 9.39 25.60 0.24 -31.91 16 12 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 13 C 0.01 0.56 5.46 84.65 0.46 1.02 16 14 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 15 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 16 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.12 4.12 3.27 44.99 0.15 4.27 16 20 C -0.19 -5.29 7.71 71.98 0.56 -4.73 16 21 C -0.17 -4.28 8.36 71.98 0.60 -3.68 16 22 C -0.08 -2.88 9.67 22.53 0.22 -2.66 16 23 C -0.15 -3.79 9.68 22.23 0.22 -3.58 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.09 0.92 8.08 -2.38 -0.02 0.90 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.19 4.19 1.07 -4.02 0.00 4.19 16 31 H 0.02 1.26 7.93 -2.38 -0.02 1.24 16 32 H -0.01 -0.35 7.36 -2.39 -0.02 -0.37 16 33 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.09 3.02 7.81 -2.39 -0.02 3.00 16 35 H 0.08 2.54 3.99 -11.41 -0.05 2.50 16 36 H 0.11 2.04 5.23 -2.39 -0.01 2.02 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.11 1.79 6.18 -2.39 -0.01 1.77 16 40 H 0.04 1.30 6.82 -2.38 -0.02 1.28 16 41 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -77.47 331.25 5.73 -71.73 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.97 Total: 14.74 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 4.43 Total: -13.31 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -1.63 Total: -86.69 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.07 Total: -33.64 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -77.47 5.73 -71.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.655 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds