Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.53006 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47300 * 59.99153 * 4 3 2 6 6 C 1.53004 * 109.46435 * 299.99588 * 4 3 2 7 7 N 1.46494 * 109.47115 * 179.97438 * 4 3 2 8 8 C 1.34781 * 119.99667 * 179.97438 * 7 4 3 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 4 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 4 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00422 * 1 2 3 26 26 H 1.08999 * 109.47114 * 59.99782 * 1 2 3 27 27 H 1.09002 * 109.47259 * 239.99578 * 2 1 3 28 28 H 1.09007 * 109.47352 * 119.99397 * 2 1 3 29 29 H 1.09000 * 109.47619 * 60.00117 * 3 2 1 30 30 H 1.09003 * 109.46789 * 299.99555 * 3 2 1 31 31 H 1.08998 * 109.47011 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47142 * 300.00712 * 5 4 3 33 33 H 1.09007 * 109.46725 * 60.00808 * 5 4 3 34 34 H 1.09000 * 109.47388 * 299.99539 * 6 4 3 35 35 H 1.08998 * 109.47128 * 60.00472 * 6 4 3 36 36 H 1.09010 * 109.46427 * 179.97438 * 6 4 3 37 37 H 0.96999 * 120.00641 * 359.97438 * 7 4 3 38 38 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 39 39 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 40 40 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 41 41 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0796 0.7213 -1.2501 6 6 4.0804 0.7211 1.2484 7 7 4.0583 2.8237 -0.0013 8 6 5.3834 3.0699 -0.0014 9 8 6.1733 2.1461 -0.0005 10 6 5.8764 4.4642 -0.0014 11 6 4.9677 5.5281 -0.0019 12 6 5.4212 6.8349 -0.0025 13 6 6.7721 7.1042 -0.0031 14 6 7.7013 6.0471 -0.0027 15 6 9.0890 6.3202 -0.0028 16 1 9.4543 7.2605 0.3830 17 6 9.9887 5.3721 -0.5027 18 7 9.5600 4.4071 -1.2751 19 14 11.8018 5.4845 -0.0674 20 1 11.9638 5.3909 1.4058 21 1 12.5371 4.3707 -0.7185 22 1 12.3458 6.7815 -0.5439 23 6 7.2428 4.7188 -0.0021 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 5.1695 0.7209 -1.2503 32 1 3.7161 -0.3064 -1.2500 33 1 3.7159 1.2353 -2.1399 34 1 3.7175 1.2349 2.1386 35 1 3.7171 -0.3065 1.2484 36 1 5.1705 0.7207 1.2477 37 1 3.4281 3.5610 -0.0016 38 1 3.9063 5.3279 -0.0026 39 1 4.7116 7.6493 -0.0024 40 1 7.1185 8.1272 -0.0040 41 1 10.1835 3.7497 -1.6213 42 1 7.9479 3.9007 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050497288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -41.684812 kcal Electronic energy + Delta-G solvation = -21254.223616 eV Core-core repulsion = 18197.942258 eV Total energy + Delta-G solvation = -3056.281358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.74519 -37.58149 -36.44518 -33.79389 -33.42388 -31.29936 -29.58351 -29.29804 -27.07183 -26.68794 -25.30342 -23.36325 -21.74378 -20.94607 -19.49040 -18.96988 -17.73646 -16.33820 -15.34834 -15.32079 -15.16946 -14.71845 -14.30921 -14.02682 -13.79864 -13.31809 -13.17284 -13.10719 -12.77725 -12.48410 -12.12285 -12.04183 -11.81915 -11.65320 -11.43390 -11.17737 -11.12441 -11.07325 -10.95849 -10.72332 -10.60286 -10.55321 -10.46613 -9.93758 -9.67550 -9.19381 -8.77164 -8.56895 -7.60560 -7.50342 -6.78776 -4.40068 2.24939 2.83790 3.08122 3.09788 3.17814 3.69429 3.90452 3.93803 4.65592 4.71293 4.82696 4.95876 5.19415 5.26520 5.36224 5.60431 5.61670 5.64187 5.71216 5.74624 5.88497 5.90086 6.00760 6.06458 6.07163 6.14055 6.18965 6.20653 6.30462 6.59085 6.64313 6.73869 6.99848 7.03225 7.08891 7.23313 7.40406 7.72580 7.79769 7.94890 8.15607 8.23847 8.52550 8.81715 8.85360 9.04465 10.15773 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.004176 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.677029 B = 6703.577441 C = 7453.974756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C 0.175 3.825 5 C -0.165 4.165 6 C -0.164 4.164 7 N -0.731 5.731 8 C 0.567 3.433 9 O -0.542 6.542 10 C -0.129 4.129 11 C -0.219 4.219 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.099 3.901 15 C -0.461 4.461 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.783 5.783 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.092 4.092 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -6.263 1.656 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.159 4.159 4 C 0.089 3.911 5 C -0.222 4.222 6 C -0.222 4.222 7 N -0.384 5.384 8 C 0.358 3.642 9 O -0.420 6.420 10 C -0.132 4.132 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.233 4.233 14 C 0.096 3.904 15 C -0.490 4.490 16 H 0.098 0.902 17 C -0.146 4.146 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.112 4.112 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.690 -7.149 1.500 13.784 hybrid contribution 0.380 0.486 0.039 0.618 sum -11.310 -6.662 1.539 13.217 Atomic orbital electron populations 1.21776 0.95947 1.01449 1.01749 1.21615 0.95550 0.96357 1.02669 1.21853 0.93901 0.97725 1.02403 1.20194 0.92595 0.82447 0.95869 1.22275 1.04143 0.99361 0.96469 1.22273 1.04067 0.99404 0.96465 1.46109 1.07545 1.07351 1.77425 1.18760 0.81254 0.89800 0.74412 1.90620 1.55559 1.46035 1.49828 1.19530 0.95162 0.90422 1.08074 1.20345 0.96114 0.92668 1.14755 1.20428 0.95238 0.95013 1.00958 1.21088 0.92601 0.97750 1.11885 1.17599 0.93274 0.90778 0.88743 1.19555 0.90817 1.02511 1.36096 0.90159 1.25958 1.01810 0.94131 0.92655 1.69782 1.37913 1.11531 1.21468 0.86331 0.81387 0.78781 0.80051 1.18731 1.20229 1.18994 1.21629 0.92456 0.97866 0.99286 0.92848 0.92827 0.92808 0.91427 0.91450 0.91509 0.91496 0.90088 0.92246 0.93001 0.93033 0.92219 0.90153 0.76836 0.89312 0.88988 0.88686 0.90411 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.15 0.37 -0.82 16 2 C -0.12 -1.14 5.23 -26.73 -0.14 -1.28 16 3 C -0.12 -1.30 4.38 -26.73 -0.12 -1.41 16 4 C 0.17 2.47 0.83 -131.82 -0.11 2.36 16 5 C -0.16 -2.42 8.05 37.16 0.30 -2.12 16 6 C -0.16 -2.36 8.05 37.16 0.30 -2.06 16 7 N -0.73 -12.20 5.06 -48.53 -0.25 -12.44 16 8 C 0.57 12.27 7.19 -12.31 -0.09 12.18 16 9 O -0.54 -13.09 12.54 5.33 0.07 -13.03 16 10 C -0.13 -3.05 5.87 -105.04 -0.62 -3.66 16 11 C -0.22 -4.63 9.55 -38.92 -0.37 -5.01 16 12 C -0.10 -2.11 10.01 -39.73 -0.40 -2.51 16 13 C -0.21 -5.11 9.78 -38.82 -0.38 -5.49 16 14 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 15 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 16 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 17 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 18 N -0.78 -20.78 10.95 55.55 0.61 -20.18 16 19 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 C -0.09 -2.47 8.23 -38.44 -0.32 -2.78 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.62 6.43 -51.93 -0.33 0.29 16 28 H 0.07 0.61 6.43 -51.92 -0.33 0.28 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.48 6.17 -51.93 -0.32 1.16 16 32 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 33 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 36 H 0.08 1.43 6.16 -51.92 -0.32 1.11 16 37 H 0.40 5.83 6.49 -40.82 -0.26 5.57 16 38 H 0.09 1.56 6.38 -52.48 -0.33 1.22 16 39 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 42 H 0.13 3.85 5.74 -52.48 -0.30 3.55 16 LS Contribution 332.28 15.07 5.01 5.01 Total: -1.00 -28.72 332.28 -8.42 -37.14 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.23 Total: 10.98 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.60 Total: -21.31 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.36 Total: -32.62 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.03 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.72 -8.42 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050497288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.544 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds