Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 C 1.53006 * 109.47286 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47300 * 59.99153 * 4 3 2 6 6 C 1.53004 * 109.46435 * 299.99588 * 4 3 2 7 7 N 1.46494 * 109.47115 * 179.97438 * 4 3 2 8 8 C 1.34781 * 119.99667 * 179.97438 * 7 4 3 9 9 O 1.21542 * 120.00415 * 359.97438 * 8 7 4 10 10 C 1.47886 * 119.99598 * 180.02562 * 8 7 4 11 11 C 1.39915 * 120.03143 * 359.97438 * 10 8 7 12 12 C 1.38325 * 120.36223 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41285 * 0.02562 * 12 11 10 14 14 C 1.40745 * 120.04067 * 359.97438 * 13 12 11 15 15 C 1.41439 * 120.18018 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99853 * 24.38666 * 15 14 13 17 17 C 1.39937 * 120.00015 * 204.38540 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.84583 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84043 * 17 15 14 20 20 H 1.48505 * 109.46643 * 60.00420 * 19 17 15 21 21 H 1.48494 * 109.47065 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47088 * 300.00333 * 19 17 15 23 23 C 1.38995 * 120.02525 * 180.02562 * 10 8 7 24 24 H 1.09000 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47259 * 300.00422 * 1 2 3 26 26 H 1.08999 * 109.47114 * 59.99782 * 1 2 3 27 27 H 1.09002 * 109.47259 * 239.99578 * 2 1 3 28 28 H 1.09007 * 109.47352 * 119.99397 * 2 1 3 29 29 H 1.09000 * 109.47619 * 60.00117 * 3 2 1 30 30 H 1.09003 * 109.46789 * 299.99555 * 3 2 1 31 31 H 1.08998 * 109.47011 * 180.02562 * 5 4 3 32 32 H 1.09004 * 109.47142 * 300.00712 * 5 4 3 33 33 H 1.09007 * 109.46725 * 60.00808 * 5 4 3 34 34 H 1.09000 * 109.47388 * 299.99539 * 6 4 3 35 35 H 1.08998 * 109.47128 * 60.00472 * 6 4 3 36 36 H 1.09010 * 109.46427 * 179.97438 * 6 4 3 37 37 H 0.96999 * 120.00641 * 359.97438 * 7 4 3 38 38 H 1.08009 * 119.81570 * 359.97438 * 11 10 8 39 39 H 1.08010 * 119.79275 * 180.02562 * 12 11 10 40 40 H 1.08002 * 119.98213 * 179.97438 * 13 12 11 41 41 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 42 42 H 1.08005 * 120.20307 * 359.70165 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0796 0.7213 -1.2501 6 6 4.0804 0.7211 1.2484 7 7 4.0583 2.8237 -0.0013 8 6 5.3834 3.0699 -0.0014 9 8 6.1733 2.1461 -0.0005 10 6 5.8764 4.4642 -0.0014 11 6 4.9677 5.5281 -0.0019 12 6 5.4212 6.8349 -0.0025 13 6 6.7721 7.1042 -0.0031 14 6 7.7013 6.0471 -0.0027 15 6 9.0890 6.3202 -0.0028 16 1 9.4543 7.2605 0.3830 17 6 9.9887 5.3721 -0.5027 18 7 9.5600 4.4071 -1.2751 19 14 11.8018 5.4845 -0.0674 20 1 11.9638 5.3909 1.4058 21 1 12.5371 4.3707 -0.7185 22 1 12.3458 6.7815 -0.5439 23 6 7.2428 4.7188 -0.0021 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 5.1695 0.7209 -1.2503 32 1 3.7161 -0.3064 -1.2500 33 1 3.7159 1.2353 -2.1399 34 1 3.7175 1.2349 2.1386 35 1 3.7171 -0.3065 1.2484 36 1 5.1705 0.7207 1.2477 37 1 3.4281 3.5610 -0.0016 38 1 3.9063 5.3279 -0.0026 39 1 4.7116 7.6493 -0.0024 40 1 7.1185 8.1272 -0.0040 41 1 10.1835 3.7497 -1.6213 42 1 7.9479 3.9007 0.0023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050497288.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -57.686639 kcal Electronic energy + Delta-G solvation = -21254.917507 eV Core-core repulsion = 18197.942258 eV Total energy + Delta-G solvation = -3056.975249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26397 -39.19879 -37.92519 -35.63325 -34.60886 -32.72585 -31.36099 -30.98730 -28.25966 -27.57653 -27.19969 -24.83315 -22.95464 -22.71023 -20.98088 -20.29977 -19.48614 -18.01404 -16.97527 -16.75069 -16.45727 -16.11170 -15.81411 -15.60757 -15.11641 -14.80061 -14.50034 -14.46959 -14.26200 -13.99617 -13.51356 -13.20453 -13.05498 -12.89851 -12.80265 -12.74751 -12.57926 -12.45195 -12.20087 -12.12156 -12.00946 -11.78001 -11.60160 -11.49138 -11.32539 -11.06350 -10.43360 -10.05022 -9.45936 -9.37655 -8.66495 -6.38132 0.41794 1.01949 1.35498 1.47369 1.50240 2.14778 2.19819 2.29607 2.80255 3.70902 3.71518 3.95637 4.04229 4.11686 4.30463 4.32737 4.42777 4.58114 4.61614 4.72070 4.74788 4.84551 4.86371 4.92872 4.98589 5.02590 5.07302 5.08997 5.19029 5.23355 5.27341 5.31611 5.42274 5.51240 5.52490 5.53327 5.71388 5.88256 5.94583 6.05921 6.29663 6.54643 6.77516 6.87997 6.95387 7.42797 8.29873 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027399 B = 0.004176 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.677029 B = 6703.577441 C = 7453.974756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.111 4.111 4 C 0.169 3.831 5 C -0.161 4.161 6 C -0.161 4.161 7 N -0.711 5.711 8 C 0.562 3.438 9 O -0.576 6.576 10 C -0.140 4.140 11 C -0.200 4.200 12 C -0.096 4.096 13 C -0.220 4.220 14 C 0.067 3.933 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.030 3.970 18 N -0.824 5.824 19 Si 0.983 3.017 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.252 1.252 23 C -0.131 4.131 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.409 0.591 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.286 0.714 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 -5.864 2.009 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.149 4.149 4 C 0.084 3.916 5 C -0.219 4.219 6 C -0.219 4.219 7 N -0.363 5.363 8 C 0.352 3.648 9 O -0.457 6.457 10 C -0.144 4.144 11 C -0.219 4.219 12 C -0.114 4.114 13 C -0.240 4.240 14 C 0.064 3.936 15 C -0.528 4.528 16 H 0.101 0.899 17 C -0.185 4.185 18 N -0.450 5.450 19 Si 0.803 3.197 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.246 0.754 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.125 0.875 41 H 0.097 0.903 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.700 -6.733 1.854 16.275 hybrid contribution 1.071 0.356 -0.062 1.130 sum -13.629 -6.377 1.792 15.154 Atomic orbital electron populations 1.21750 0.94659 1.02157 1.02105 1.21618 0.96620 0.95080 1.02784 1.21812 0.90391 0.99246 1.03442 1.20486 0.95140 0.80613 0.95354 1.22233 1.01368 1.01339 0.96997 1.22227 1.01403 1.01320 0.96915 1.45984 1.05769 1.09262 1.75323 1.18625 0.82781 0.88686 0.74735 1.90619 1.56982 1.46692 1.51437 1.19893 0.94649 0.92605 1.07204 1.20857 0.97963 0.91805 1.11314 1.20917 0.94927 0.96523 0.99027 1.21396 0.93693 0.97691 1.11219 1.17951 0.94282 0.91528 0.89791 1.19841 0.91680 1.03450 1.37878 0.89860 1.26853 1.06403 0.93372 0.91898 1.69888 1.39442 1.12632 1.22997 0.85245 0.75550 0.79290 0.79620 1.18527 1.19643 1.17615 1.21430 0.93581 0.97208 1.02917 0.92055 0.92422 0.92515 0.91429 0.91287 0.90357 0.90564 0.94306 0.89543 0.92676 0.92385 0.89575 0.94215 0.75356 0.84685 0.84447 0.87467 0.90342 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.83 5.23 30.59 0.16 -1.67 16 3 C -0.11 -1.98 4.38 30.60 0.13 -1.85 16 4 C 0.17 4.47 0.83 3.61 0.00 4.48 16 5 C -0.16 -4.63 8.05 71.98 0.58 -4.05 16 6 C -0.16 -4.47 8.05 71.98 0.58 -3.89 16 7 N -0.71 -22.59 5.06 -425.72 -2.15 -24.75 16 8 C 0.56 24.70 7.19 86.80 0.62 25.33 16 9 O -0.58 -29.43 12.54 -3.85 -0.05 -29.47 16 10 C -0.14 -6.72 5.87 -20.13 -0.12 -6.83 16 11 C -0.20 -7.94 9.55 22.70 0.22 -7.73 16 12 C -0.10 -3.85 10.01 22.17 0.22 -3.63 16 13 C -0.22 -10.45 9.78 22.77 0.22 -10.23 16 14 C 0.07 3.68 5.57 -21.32 -0.12 3.57 16 15 C -0.50 -27.60 9.05 23.47 0.21 -27.39 16 16 H 0.08 4.34 7.91 -2.91 -0.02 4.31 16 17 C 0.03 1.58 5.14 85.25 0.44 2.02 16 18 N -0.82 -46.60 10.95 21.82 0.24 -46.36 16 19 Si 0.98 40.17 29.60 68.60 2.03 42.20 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.13 -7.37 8.23 23.01 0.19 -7.18 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 1.01 6.43 -2.39 -0.02 1.00 16 28 H 0.07 1.01 6.43 -2.38 -0.02 1.00 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.45 6.17 -2.39 -0.01 1.44 16 32 H 0.09 1.96 6.43 -2.38 -0.02 1.94 16 33 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.90 6.43 -2.39 -0.02 1.88 16 36 H 0.04 1.44 6.16 -2.38 -0.01 1.43 16 37 H 0.41 10.64 6.49 -92.71 -0.60 10.04 16 38 H 0.14 4.06 6.38 -2.91 -0.02 4.04 16 39 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 42 H 0.10 6.16 5.74 -2.91 -0.02 6.14 16 Total: -1.00 -68.05 332.28 4.54 -63.50 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: 0.42 Total: 35.01 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.06 Total: -40.13 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.91 Total: -71.10 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.05 Total: -29.47 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -68.05 4.54 -63.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050497288.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.815 kcal (2) G-P(sol) polarization free energy of solvation -68.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds