Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 C 1.53008 * 109.46981 * 240.00433 * 2 1 3 5 5 C 1.50694 * 109.47273 * 120.00515 * 2 1 3 6 6 C 1.38230 * 120.00052 * 59.99794 * 5 2 1 7 7 C 1.38239 * 120.00169 * 180.02562 * 6 5 2 8 8 C 1.38241 * 119.99841 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99984 * 179.70088 * 8 7 6 10 10 C 1.52999 * 109.47163 * 90.00173 * 9 8 7 11 11 N 1.46505 * 109.46980 * 180.02562 * 10 9 8 12 12 C 1.34773 * 119.99638 * 179.97438 * 11 10 9 13 13 O 1.21687 * 120.00627 * 0.02562 * 12 11 10 14 14 C 1.46380 * 119.99680 * 179.97438 * 12 11 10 15 15 H 1.07997 * 119.99991 * 353.94183 * 14 12 11 16 16 C 1.40044 * 119.99805 * 173.94117 * 14 12 11 17 17 N 1.30670 * 120.00547 * 6.15315 * 16 14 12 18 18 Si 1.86808 * 119.99884 * 186.14996 * 16 14 12 19 19 H 1.48502 * 109.46896 * 94.98550 * 18 16 14 20 20 H 1.48502 * 109.47102 * 214.98407 * 18 16 14 21 21 H 1.48499 * 109.47055 * 334.98620 * 18 16 14 22 22 C 1.38238 * 119.99797 * 359.97438 * 8 7 6 23 23 C 1.38231 * 120.00170 * 0.04792 * 22 8 7 24 24 H 1.09000 * 109.46784 * 299.99578 * 1 2 3 25 25 H 1.09006 * 109.47349 * 59.99262 * 1 2 3 26 26 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47589 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47237 * 300.00653 * 3 2 1 29 29 H 1.09000 * 109.46837 * 60.00454 * 3 2 1 30 30 H 1.08998 * 109.46783 * 299.99946 * 4 2 1 31 31 H 1.09006 * 109.46830 * 59.99988 * 4 2 1 32 32 H 1.09000 * 109.46943 * 179.97438 * 4 2 1 33 33 H 1.08001 * 120.00049 * 0.02562 * 6 5 2 34 34 H 1.08000 * 120.00323 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47199 * 210.00212 * 9 8 7 36 36 H 1.09004 * 109.46995 * 330.00131 * 9 8 7 37 37 H 1.09007 * 109.46972 * 299.99555 * 10 9 8 38 38 H 1.08992 * 109.47491 * 59.99868 * 10 9 8 39 39 H 0.96996 * 119.99925 * 359.97438 * 11 10 9 40 40 H 0.97001 * 120.00814 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99906 * 179.97438 * 22 8 7 42 42 H 1.08001 * 120.00158 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.6984 -2.0339 1.4490 7 6 2.1588 -2.6855 2.5779 8 6 2.9536 -2.0138 3.4879 9 6 3.4499 -2.7221 4.7219 10 6 4.7961 -3.3849 4.4229 11 7 5.2783 -4.0740 5.6224 12 6 6.4532 -4.7336 5.5941 13 8 7.1138 -4.7564 4.5725 14 6 6.9353 -5.4217 6.7928 15 1 6.4005 -5.3202 7.7256 16 6 8.0899 -6.2116 6.7301 17 7 8.8041 -6.2393 5.6361 18 14 8.6094 -7.2258 8.2104 19 1 8.0842 -8.6080 8.0723 20 1 10.0918 -7.2650 8.2880 21 1 8.0649 -6.6107 9.4475 22 6 3.2884 -0.6906 3.2686 23 6 2.8277 -0.0389 2.1400 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2494 31 1 1.6766 -0.2072 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.0778 -2.5588 0.7379 34 1 1.8975 -3.7194 2.7490 35 1 3.5715 -2.0013 5.5305 36 1 2.7282 -3.4831 5.0191 37 1 4.6744 -4.1058 3.6143 38 1 5.5177 -2.6240 4.1258 39 1 4.7519 -4.0556 6.4370 40 1 9.6037 -6.7868 5.5925 41 1 3.9090 -0.1656 3.9798 42 1 3.0889 0.9950 1.9689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057534722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = -44.214254 kcal Electronic energy + Delta-G solvation = -20310.209944 eV Core-core repulsion = 17253.818901 eV Total energy + Delta-G solvation = -3056.391042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96723 -37.49202 -36.65443 -33.93779 -32.40145 -31.17276 -31.06678 -27.88605 -27.55316 -27.45073 -25.97549 -23.21315 -22.30848 -21.19699 -19.64359 -19.23402 -17.20995 -16.44471 -15.52442 -15.30570 -14.96082 -14.53755 -14.41137 -14.13001 -14.09827 -13.71311 -13.57216 -13.34933 -12.90988 -12.48355 -12.28303 -12.12207 -12.02890 -11.90084 -11.66861 -11.45971 -11.33098 -11.09588 -11.06898 -10.99121 -10.68419 -10.62424 -10.45868 -10.39060 -10.19029 -8.83334 -8.81570 -8.41487 -7.57443 -7.46115 -6.16484 -4.60686 1.41257 1.49581 3.15598 3.22506 3.26221 3.80161 4.13176 4.43135 4.56741 4.62035 4.77617 4.80330 4.99266 5.07598 5.11396 5.32499 5.33255 5.39770 5.45564 5.53087 5.54182 5.64533 5.65012 5.66013 5.71175 5.79982 5.84553 5.84849 5.93377 6.04972 6.09986 6.14452 6.18705 6.52233 6.53333 6.65452 6.66173 6.82794 7.09525 7.46359 7.96955 8.13670 8.36510 9.05364 9.57840 10.63270 10.82076 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044240 B = 0.002763 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.755795 B =10131.108971 C =10268.511837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.081 4.081 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.073 4.073 9 C -0.092 4.092 10 C 0.140 3.860 11 N -0.769 5.769 12 C 0.554 3.446 13 O -0.582 6.582 14 C -0.547 4.547 15 H 0.068 0.932 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.908 3.092 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.113 4.113 23 C -0.121 4.121 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.380 0.620 40 H 0.268 0.732 41 H 0.121 0.879 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.601 12.417 -8.544 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.081 4.081 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.074 4.074 9 C -0.130 4.130 10 C 0.015 3.985 11 N -0.425 5.425 12 C 0.358 3.642 13 O -0.464 6.464 14 C -0.584 4.584 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.131 4.131 23 C -0.138 4.138 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.211 0.789 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.932 12.335 -9.421 22.243 hybrid contribution 0.031 -0.545 1.115 1.242 sum -15.902 11.790 -8.306 21.468 Atomic orbital electron populations 1.21881 0.93895 1.02001 1.01661 1.19479 0.95522 0.94988 0.92908 1.21959 1.01345 0.95041 1.01733 1.21896 1.01471 1.00198 0.96041 1.19731 0.98353 0.94171 0.95816 1.20898 1.00586 0.94269 0.97516 1.21058 0.98010 0.99722 0.94285 1.19835 0.96964 0.94056 0.96511 1.20844 0.97794 0.99463 0.94861 1.20805 0.92141 0.95457 0.90065 1.46157 1.25096 1.58972 1.12292 1.18230 0.78483 0.77934 0.89572 1.90598 1.57028 1.64214 1.34600 1.20893 1.10969 1.31081 0.95451 0.91400 1.25713 0.95344 0.95798 0.96384 1.70031 1.11932 1.31445 1.26335 0.86366 0.78051 0.80284 0.82073 1.19823 1.20473 1.18901 1.21080 0.99767 0.94438 0.97815 1.21120 0.98329 1.00033 0.94362 0.92562 0.92544 0.92457 0.92174 0.92553 0.92311 0.92410 0.92540 0.92353 0.86471 0.86084 0.90815 0.90807 0.93391 0.93392 0.78905 0.92146 0.86090 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 2 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.13 7.13 37.16 0.27 -0.86 16 4 C -0.14 -1.19 8.29 37.16 0.31 -0.88 16 5 C -0.08 -0.90 4.76 -104.63 -0.50 -1.40 16 6 C -0.11 -1.34 8.71 -39.58 -0.34 -1.69 16 7 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 8 C -0.07 -1.02 5.13 -104.62 -0.54 -1.55 16 9 C -0.09 -1.35 5.46 -27.89 -0.15 -1.50 16 10 C 0.14 2.80 5.66 -4.04 -0.02 2.77 16 11 N -0.77 -17.63 5.55 -61.72 -0.34 -17.98 16 12 C 0.55 16.20 7.74 -12.99 -0.10 16.10 16 13 O -0.58 -19.44 15.05 5.20 0.08 -19.36 16 14 C -0.55 -15.73 9.53 -35.63 -0.34 -16.07 16 15 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 16 C 0.09 2.48 5.49 -17.37 -0.10 2.38 16 17 N -0.77 -23.50 11.85 55.55 0.66 -22.84 16 18 Si 0.91 20.38 29.56 -169.99 -5.03 15.35 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 22 C -0.11 -1.47 9.70 -39.58 -0.38 -1.86 16 23 C -0.12 -1.41 8.98 -39.58 -0.36 -1.77 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 27 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 30 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.12 1.16 7.10 -52.49 -0.37 0.79 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.38 7.51 8.45 -40.82 -0.35 7.17 16 40 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 42 H 0.12 1.21 5.90 -52.49 -0.31 0.90 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -34.84 345.45 -8.66 -43.50 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.77 Total: 5.45 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.47 Total: -9.33 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.32 Total: -40.82 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.08 Total: -19.36 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.84 -8.66 -43.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057534722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.714 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds