Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47341 * 2 1 4 4 C 1.53008 * 109.46981 * 240.00433 * 2 1 3 5 5 C 1.50694 * 109.47273 * 120.00515 * 2 1 3 6 6 C 1.38230 * 120.00052 * 59.99794 * 5 2 1 7 7 C 1.38239 * 120.00169 * 180.02562 * 6 5 2 8 8 C 1.38241 * 119.99841 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99984 * 179.70088 * 8 7 6 10 10 C 1.52999 * 109.47163 * 90.00173 * 9 8 7 11 11 N 1.46505 * 109.46980 * 180.02562 * 10 9 8 12 12 C 1.34773 * 119.99638 * 179.97438 * 11 10 9 13 13 O 1.21687 * 120.00627 * 0.02562 * 12 11 10 14 14 C 1.46380 * 119.99680 * 179.97438 * 12 11 10 15 15 H 1.07997 * 119.99991 * 353.94183 * 14 12 11 16 16 C 1.40044 * 119.99805 * 173.94117 * 14 12 11 17 17 N 1.30670 * 120.00547 * 6.15315 * 16 14 12 18 18 Si 1.86808 * 119.99884 * 186.14996 * 16 14 12 19 19 H 1.48502 * 109.46896 * 94.98550 * 18 16 14 20 20 H 1.48502 * 109.47102 * 214.98407 * 18 16 14 21 21 H 1.48499 * 109.47055 * 334.98620 * 18 16 14 22 22 C 1.38238 * 119.99797 * 359.97438 * 8 7 6 23 23 C 1.38231 * 120.00170 * 0.04792 * 22 8 7 24 24 H 1.09000 * 109.46784 * 299.99578 * 1 2 3 25 25 H 1.09006 * 109.47349 * 59.99262 * 1 2 3 26 26 H 1.08998 * 109.47318 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47589 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47237 * 300.00653 * 3 2 1 29 29 H 1.09000 * 109.46837 * 60.00454 * 3 2 1 30 30 H 1.08998 * 109.46783 * 299.99946 * 4 2 1 31 31 H 1.09006 * 109.46830 * 59.99988 * 4 2 1 32 32 H 1.09000 * 109.46943 * 179.97438 * 4 2 1 33 33 H 1.08001 * 120.00049 * 0.02562 * 6 5 2 34 34 H 1.08000 * 120.00323 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47199 * 210.00212 * 9 8 7 36 36 H 1.09004 * 109.46995 * 330.00131 * 9 8 7 37 37 H 1.09007 * 109.46972 * 299.99555 * 10 9 8 38 38 H 1.08992 * 109.47491 * 59.99868 * 10 9 8 39 39 H 0.96996 * 119.99925 * 359.97438 * 11 10 9 40 40 H 0.97001 * 120.00814 * 180.02562 * 17 16 14 41 41 H 1.08001 * 119.99906 * 179.97438 * 22 8 7 42 42 H 1.08001 * 120.00158 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0323 -0.7105 1.2303 6 6 1.6984 -2.0339 1.4490 7 6 2.1588 -2.6855 2.5779 8 6 2.9536 -2.0138 3.4879 9 6 3.4499 -2.7221 4.7219 10 6 4.7961 -3.3849 4.4229 11 7 5.2783 -4.0740 5.6224 12 6 6.4532 -4.7336 5.5941 13 8 7.1138 -4.7564 4.5725 14 6 6.9353 -5.4217 6.7928 15 1 6.4005 -5.3202 7.7256 16 6 8.0899 -6.2116 6.7301 17 7 8.8041 -6.2393 5.6361 18 14 8.6094 -7.2258 8.2104 19 1 8.0842 -8.6080 8.0723 20 1 10.0918 -7.2650 8.2880 21 1 8.0649 -6.6107 9.4475 22 6 3.2884 -0.6906 3.2686 23 6 2.8277 -0.0389 2.1400 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4426 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2494 31 1 1.6766 -0.2072 -2.1393 32 1 3.1300 -0.7208 -1.2496 33 1 1.0778 -2.5588 0.7379 34 1 1.8975 -3.7194 2.7490 35 1 3.5715 -2.0013 5.5305 36 1 2.7282 -3.4831 5.0191 37 1 4.6744 -4.1058 3.6143 38 1 5.5177 -2.6240 4.1258 39 1 4.7519 -4.0556 6.4370 40 1 9.6037 -6.7868 5.5925 41 1 3.9090 -0.1656 3.9798 42 1 3.0889 0.9950 1.9689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057534722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = -65.746033 kcal Electronic energy + Delta-G solvation = -20311.143632 eV Core-core repulsion = 17253.818901 eV Total energy + Delta-G solvation = -3057.324730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88018 -39.43998 -37.74018 -35.63487 -34.54850 -32.66238 -31.99810 -29.43340 -28.22229 -28.08404 -27.82875 -24.60688 -23.24683 -22.33894 -21.74223 -20.05149 -19.22077 -17.58678 -17.22733 -16.61283 -16.36893 -15.94517 -15.70269 -15.52113 -15.12980 -14.79472 -14.52810 -14.43344 -14.32872 -13.91309 -13.73106 -13.16498 -13.14013 -12.89027 -12.82120 -12.65633 -12.55962 -12.48057 -12.46035 -12.41596 -12.00322 -11.99572 -11.78250 -11.47142 -11.33033 -10.94004 -9.90645 -9.79500 -9.51188 -9.39220 -8.30762 -6.86465 0.42678 0.52935 1.40383 1.41880 1.58159 2.24814 2.46041 2.80259 3.15026 3.59518 3.68681 3.81446 4.03978 4.07507 4.13347 4.17066 4.24409 4.32584 4.40870 4.57957 4.61588 4.64191 4.79645 4.82033 4.91285 4.98356 5.01292 5.03336 5.04629 5.11404 5.19455 5.22333 5.27634 5.31791 5.38838 5.45502 5.60622 5.75298 5.77149 5.86802 6.14046 6.22801 6.25854 6.85706 7.54825 8.47873 8.66318 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.044240 B = 0.002763 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.755795 B =10131.108971 C =10268.511837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.079 4.079 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.095 4.095 9 C -0.073 4.073 10 C 0.146 3.854 11 N -0.755 5.755 12 C 0.535 3.465 13 O -0.636 6.636 14 C -0.574 4.574 15 H 0.090 0.910 16 C 0.026 3.974 17 N -0.824 5.824 18 Si 1.002 2.998 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.246 1.246 22 C -0.125 4.125 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.398 0.602 40 H 0.275 0.725 41 H 0.126 0.874 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.074 12.789 -7.635 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.079 4.079 6 C -0.138 4.138 7 C -0.142 4.142 8 C -0.096 4.096 9 C -0.110 4.110 10 C 0.021 3.979 11 N -0.410 5.410 12 C 0.339 3.661 13 O -0.524 6.524 14 C -0.610 4.610 15 H 0.108 0.892 16 C -0.189 4.189 17 N -0.453 5.453 18 Si 0.821 3.179 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.170 1.170 22 C -0.143 4.143 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.232 0.768 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.472 12.741 -8.490 23.231 hybrid contribution 0.439 -0.588 0.733 1.037 sum -17.033 12.153 -7.756 22.316 Atomic orbital electron populations 1.21864 0.92786 1.02242 1.02303 1.19556 0.96360 0.95322 0.91750 1.21960 1.01008 0.94462 1.02623 1.21900 1.00668 1.00403 0.96620 1.20095 0.97347 0.94116 0.96380 1.21141 1.00609 0.94685 0.97367 1.21242 0.98161 1.00128 0.94709 1.19818 0.98388 0.94631 0.96730 1.20654 0.94656 0.99779 0.95954 1.20837 0.94534 0.94250 0.88300 1.45826 1.23605 1.57642 1.13962 1.18693 0.79726 0.78368 0.89329 1.90549 1.59123 1.66354 1.36357 1.21448 1.11916 1.31507 0.96136 0.89159 1.27047 0.94835 0.96765 1.00250 1.70203 1.12803 1.32714 1.29622 0.84957 0.77724 0.78040 0.77223 1.18739 1.19765 1.16952 1.21268 0.99990 0.94403 0.98593 1.21384 0.98171 1.00958 0.93992 0.92824 0.91015 0.92454 0.92744 0.91104 0.92036 0.92528 0.90853 0.93613 0.84754 0.85614 0.89381 0.89395 0.95573 0.95529 0.76843 0.91536 0.85591 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.29 71.98 0.60 -1.20 16 2 C -0.03 -0.48 0.85 -52.93 -0.05 -0.52 16 3 C -0.14 -1.97 7.13 71.98 0.51 -1.46 16 4 C -0.14 -2.15 8.29 71.98 0.60 -1.56 16 5 C -0.08 -1.69 4.76 -19.87 -0.09 -1.78 16 6 C -0.12 -2.71 8.71 22.27 0.19 -2.51 16 7 C -0.12 -3.21 9.70 22.27 0.22 -2.99 16 8 C -0.10 -2.63 5.13 -19.87 -0.10 -2.73 16 9 C -0.07 -2.11 5.46 29.85 0.16 -1.94 16 10 C 0.15 5.97 5.66 86.38 0.49 6.46 16 11 N -0.76 -35.13 5.55 -467.40 -2.59 -37.72 16 12 C 0.53 32.13 7.74 86.36 0.67 32.80 16 13 O -0.64 -44.45 15.05 -4.31 -0.06 -44.52 16 14 C -0.57 -33.14 9.53 24.83 0.24 -32.90 16 15 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 16 C 0.03 1.47 5.49 85.30 0.47 1.94 16 17 N -0.82 -51.61 11.85 21.83 0.26 -51.36 16 18 Si 1.00 41.38 29.56 68.60 2.03 43.41 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 22 C -0.12 -3.21 9.70 22.27 0.22 -2.99 16 23 C -0.13 -2.88 8.98 22.27 0.20 -2.68 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 0.76 7.39 -2.39 -0.02 0.74 16 27 H 0.05 0.81 7.51 -2.39 -0.02 0.79 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.81 7.51 -2.39 -0.02 0.79 16 30 H 0.06 0.88 7.39 -2.39 -0.02 0.86 16 31 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.13 2.48 7.10 -2.91 -0.02 2.46 16 34 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.09 2.29 8.08 -2.39 -0.02 2.27 16 36 H 0.09 2.29 8.09 -2.38 -0.02 2.27 16 37 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.40 15.50 8.45 -92.71 -0.78 14.72 16 40 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 41 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 42 H 0.14 2.59 5.90 -2.91 -0.02 2.58 16 Total: -1.00 -77.89 345.45 4.16 -73.73 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.22 Total: 30.53 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.32 Total: -14.07 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.34 Total: -89.08 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.06 Total: -44.52 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -77.89 4.16 -73.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057534722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.985 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds