Wall clock time and date at job start Mon Mar 30 2020 02:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 C 1.34779 * 120.00299 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99453 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.50703 * 109.46615 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00467 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99789 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99527 * 0.02562 * 16 14 13 18 18 Si 1.86789 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47119 * 90.00411 * 18 16 14 20 20 H 1.48505 * 109.47194 * 210.00169 * 18 16 14 21 21 H 1.48501 * 109.47276 * 330.00323 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 23 23 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 24 24 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 25 25 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 26 26 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 29 29 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 30 30 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 31 31 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 32 32 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 34 34 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 35 35 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 36 36 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 37 37 H 0.97001 * 119.99949 * 359.97438 * 10 9 8 38 38 H 1.08995 * 109.47105 * 299.99869 * 13 11 10 39 39 H 1.09003 * 109.46939 * 60.00739 * 13 11 10 40 40 H 0.97005 * 119.99760 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00274 * 179.72697 * 22 8 7 42 42 H 1.07997 * 120.00460 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 7 2.4907 -2.5561 5.8077 11 6 2.7310 -3.1101 7.0126 12 8 3.7462 -3.7482 7.1949 13 6 1.7384 -2.9368 8.1331 14 6 2.2402 -3.6484 9.3631 15 1 3.1837 -4.1733 9.3363 16 6 1.4953 -3.6285 10.5232 17 7 0.3466 -2.9889 10.5561 18 14 2.1175 -4.5098 12.0480 19 1 2.9433 -3.5772 12.8566 20 1 0.9623 -4.9760 12.8564 21 1 2.9417 -5.6770 11.6435 22 6 3.2870 -0.6901 3.2695 23 6 2.8267 -0.0386 2.1406 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 1.0771 -2.5587 0.7384 34 1 1.8898 -3.7166 2.7539 35 1 3.5773 -3.7854 4.5012 36 1 4.4159 -2.3019 5.0152 37 1 1.6786 -2.0461 5.6617 38 1 1.6177 -1.8756 8.3507 39 1 0.7781 -3.3585 7.8363 40 1 -0.1777 -2.9751 11.3721 41 1 3.9077 -0.1652 3.9806 42 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057534724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:31 Heat of formation + Delta-G solvation = -40.739349 kcal Electronic energy + Delta-G solvation = -20320.940977 eV Core-core repulsion = 17264.700617 eV Total energy + Delta-G solvation = -3056.240359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.14093 -38.58441 -36.82060 -33.95236 -32.89156 -31.21814 -30.64067 -28.78806 -27.65372 -27.53677 -25.82624 -23.33668 -22.44549 -21.76241 -19.64830 -19.35280 -16.93293 -16.34230 -15.81733 -15.62768 -15.09853 -14.89526 -14.54325 -14.36265 -14.31203 -13.88749 -13.74535 -13.53551 -12.96418 -12.62796 -12.50285 -12.26465 -12.18818 -12.05797 -11.97719 -11.69346 -11.52952 -11.23080 -11.10423 -10.80534 -10.71937 -10.68413 -10.57151 -9.93156 -9.24340 -8.98188 -8.95134 -8.46598 -8.41291 -8.37113 -6.03285 -4.02611 1.19089 1.34583 3.36674 3.41679 3.48635 3.56586 3.75746 4.20634 4.31984 4.46514 4.52951 4.70653 4.81081 4.88950 4.94285 5.00992 5.24421 5.31960 5.34863 5.37319 5.43344 5.46042 5.57581 5.58734 5.68289 5.71800 5.75616 5.81216 5.95314 6.00796 6.01112 6.03843 6.34618 6.42478 6.51835 6.61242 6.91775 7.06779 7.22590 7.36354 7.98592 8.09586 8.47842 9.08411 9.26678 9.62345 11.09184 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038686 B = 0.002846 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.606827 B = 9837.315685 C =10069.921534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.070 4.070 6 C -0.118 4.118 7 C -0.099 4.099 8 C -0.102 4.102 9 C 0.160 3.840 10 N -0.745 5.745 11 C 0.514 3.486 12 O -0.547 6.547 13 C 0.005 3.995 14 C -0.507 4.507 15 H 0.075 0.925 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.099 4.099 23 C -0.124 4.124 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.397 0.603 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.261 0.739 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 8.200 -24.459 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.070 4.070 6 C -0.136 4.136 7 C -0.118 4.118 8 C -0.102 4.102 9 C 0.036 3.964 10 N -0.399 5.399 11 C 0.304 3.696 12 O -0.423 6.423 13 C -0.034 4.034 14 C -0.546 4.546 15 H 0.093 0.907 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.118 4.118 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.230 0.770 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.138 7.749 -24.181 25.418 hybrid contribution -0.196 -0.149 0.751 0.791 sum 0.942 7.601 -23.430 24.650 Atomic orbital electron populations 1.21895 0.93631 1.02160 1.01919 1.19507 0.95756 0.95027 0.92746 1.21966 1.01193 0.95009 1.01976 1.21887 1.01241 1.00238 0.96156 1.19812 0.97438 0.94034 0.95737 1.20933 1.00659 0.94345 0.97675 1.21099 0.96760 1.00092 0.93830 1.20008 0.98991 0.94602 0.96598 1.20055 0.92870 0.99458 0.84023 1.46391 1.24370 1.57651 1.11515 1.22039 0.88215 0.76574 0.82766 1.90533 1.28979 1.40483 1.82322 1.19236 0.93675 0.99554 0.90914 1.21180 1.06688 1.32448 0.94245 0.90692 1.25016 0.94889 0.95691 0.99095 1.69967 1.13024 1.43053 1.28089 0.86426 0.78217 0.80064 0.82360 1.20620 1.21284 1.19673 1.21127 0.99473 0.93989 0.97207 1.21154 0.98533 1.00131 0.94365 0.92344 0.92427 0.92374 0.92260 0.92445 0.92150 0.92400 0.92431 0.92501 0.86234 0.85872 0.91437 0.91435 0.77001 0.93486 0.93476 0.92936 0.85876 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.29 37.16 0.31 -0.70 16 2 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 3 C -0.14 -0.98 7.13 37.16 0.27 -0.71 16 4 C -0.14 -0.95 8.29 37.16 0.31 -0.64 16 5 C -0.07 -0.68 4.76 -104.62 -0.50 -1.18 16 6 C -0.12 -1.20 8.71 -39.58 -0.34 -1.54 16 7 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 8 C -0.10 -1.28 5.25 -104.63 -0.55 -1.83 16 9 C 0.16 2.44 5.80 -5.20 -0.03 2.41 16 10 N -0.74 -13.21 5.55 -61.47 -0.34 -13.55 16 11 C 0.51 11.94 7.82 -10.98 -0.09 11.86 16 12 O -0.55 -14.54 15.46 5.56 0.09 -14.45 16 13 C 0.01 0.14 5.46 -29.03 -0.16 -0.02 16 14 C -0.51 -14.96 8.92 -34.44 -0.31 -15.27 16 15 H 0.07 2.30 6.75 -52.49 -0.35 1.95 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 18 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 23 C -0.12 -1.26 8.98 -39.58 -0.36 -1.62 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 27 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 30 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.12 1.01 7.10 -52.49 -0.37 0.64 16 34 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 36 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 37 H 0.40 6.23 8.46 -40.82 -0.35 5.88 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.13 1.06 5.89 -52.49 -0.31 0.75 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -32.71 345.88 -8.48 -41.19 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.71 Total: 1.44 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.45 Total: -11.19 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.40 Total: -39.59 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.71 -8.48 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057534724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.451 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds