Wall clock time and date at job start Mon Mar 30 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38229 * 120.00124 * 359.45911 * 7 6 5 9 9 C 1.50699 * 120.00230 * 180.28369 * 8 7 6 10 10 N 1.46496 * 109.47288 * 270.27879 * 9 8 7 11 11 C 1.34779 * 120.00299 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99453 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00003 * 179.97438 * 11 10 9 14 14 C 1.50703 * 109.46615 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00467 * 0.02562 * 14 13 11 16 16 C 1.37881 * 119.99789 * 179.97438 * 14 13 11 17 17 N 1.31516 * 119.99527 * 0.02562 * 16 14 13 18 18 Si 1.86789 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47119 * 90.00411 * 18 16 14 20 20 H 1.48505 * 109.47194 * 210.00169 * 18 16 14 21 21 H 1.48501 * 109.47276 * 330.00323 * 18 16 14 22 22 C 1.38234 * 119.99957 * 0.56005 * 8 7 6 23 23 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 24 24 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 25 25 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 26 26 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 29 29 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 30 30 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 31 31 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 32 32 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 33 33 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 34 34 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 35 35 H 1.09007 * 109.47085 * 30.27493 * 9 8 7 36 36 H 1.08998 * 109.47270 * 150.26989 * 9 8 7 37 37 H 0.97001 * 119.99949 * 359.97438 * 10 9 8 38 38 H 1.08995 * 109.47105 * 299.99869 * 13 11 10 39 39 H 1.09003 * 109.46939 * 60.00739 * 13 11 10 40 40 H 0.97005 * 119.99760 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.00274 * 179.72697 * 22 8 7 42 42 H 1.07997 * 120.00460 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9534 -2.0137 3.4880 9 6 3.4558 -2.7241 4.7185 10 7 2.4907 -2.5561 5.8077 11 6 2.7310 -3.1101 7.0126 12 8 3.7462 -3.7482 7.1949 13 6 1.7384 -2.9368 8.1331 14 6 2.2402 -3.6484 9.3631 15 1 3.1837 -4.1733 9.3363 16 6 1.4953 -3.6285 10.5232 17 7 0.3466 -2.9889 10.5561 18 14 2.1175 -4.5098 12.0480 19 1 2.9433 -3.5772 12.8566 20 1 0.9623 -4.9760 12.8564 21 1 2.9417 -5.6770 11.6435 22 6 3.2870 -0.6901 3.2695 23 6 2.8267 -0.0386 2.1406 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.1299 -0.7208 -1.2495 33 1 1.0771 -2.5587 0.7384 34 1 1.8898 -3.7166 2.7539 35 1 3.5773 -3.7854 4.5012 36 1 4.4159 -2.3019 5.0152 37 1 1.6786 -2.0461 5.6617 38 1 1.6177 -1.8756 8.3507 39 1 0.7781 -3.3585 7.8363 40 1 -0.1777 -2.9751 11.3721 41 1 3.9077 -0.1652 3.9806 42 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057534724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:30 Heat of formation + Delta-G solvation = -59.630956 kcal Electronic energy + Delta-G solvation = -20321.760178 eV Core-core repulsion = 17264.700617 eV Total energy + Delta-G solvation = -3057.059561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.04376 -40.25566 -37.70102 -35.39893 -35.08844 -32.04171 -31.97072 -30.62058 -28.21381 -28.06842 -27.18381 -25.24707 -23.27361 -22.74159 -21.40944 -20.06957 -18.55112 -18.13045 -17.14317 -16.80095 -16.67084 -16.25415 -15.86937 -15.70160 -15.11630 -14.82397 -14.56713 -14.46833 -14.37831 -14.14277 -13.83051 -13.60799 -13.11074 -12.97118 -12.85357 -12.78445 -12.56674 -12.53135 -12.50757 -12.24493 -12.04435 -11.80950 -11.50584 -11.45756 -11.35029 -10.64779 -10.63459 -10.02791 -9.82115 -9.51900 -8.25765 -6.33283 0.29355 0.49759 1.39986 1.41049 1.53836 1.87110 2.33653 2.49715 2.96796 3.09422 3.60234 3.80164 3.80782 4.06419 4.13303 4.14785 4.35758 4.40723 4.42252 4.54409 4.70536 4.74976 4.81743 4.85022 4.93355 5.00847 5.04298 5.06661 5.07210 5.15792 5.17499 5.25125 5.26594 5.39225 5.46827 5.51546 5.56873 5.67767 5.73196 5.74430 6.04546 6.08082 6.68859 6.82923 7.32715 7.48987 8.86513 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038686 B = 0.002846 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.606827 B = 9837.315685 C =10069.921534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.066 4.066 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.115 4.115 9 C 0.164 3.836 10 N -0.722 5.722 11 C 0.519 3.481 12 O -0.585 6.585 13 C 0.009 3.991 14 C -0.537 4.537 15 H 0.055 0.945 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.274 1.274 22 C -0.106 4.106 23 C -0.127 4.127 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.138 0.862 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.268 0.732 41 H 0.126 0.874 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 8.899 -25.826 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.202 4.202 4 C -0.194 4.194 5 C -0.066 4.066 6 C -0.138 4.138 7 C -0.124 4.124 8 C -0.116 4.116 9 C 0.041 3.959 10 N -0.375 5.375 11 C 0.308 3.692 12 O -0.465 6.465 13 C -0.031 4.031 14 C -0.576 4.576 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.198 1.198 21 H -0.199 1.199 22 C -0.125 4.125 23 C -0.145 4.145 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.155 0.845 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.691 8.482 -25.594 26.971 hybrid contribution -0.109 -0.301 1.053 1.100 sum 0.582 8.181 -24.541 25.875 Atomic orbital electron populations 1.21896 0.93185 1.02274 1.02206 1.19573 0.96049 0.95426 0.92013 1.21973 1.01284 0.94422 1.02501 1.21881 1.00960 1.00363 0.96203 1.20147 0.96345 0.93943 0.96196 1.21147 1.00534 0.94673 0.97408 1.21203 0.96672 1.00377 0.94191 1.19752 1.00736 0.95135 0.95960 1.20103 0.92034 0.99641 0.84160 1.46111 1.25052 1.55827 1.10505 1.21484 0.87103 0.76781 0.83848 1.90510 1.30213 1.42519 1.83272 1.19073 0.94034 0.98653 0.91321 1.21381 1.06452 1.33471 0.96268 0.92657 1.25815 0.94986 0.96196 1.01965 1.70038 1.13727 1.43532 1.29201 0.85435 0.78087 0.78838 0.78609 1.19601 1.19780 1.19897 1.21233 0.99653 0.93641 0.97932 1.21384 0.98265 1.00983 0.93827 0.93183 0.91052 0.92375 0.92158 0.91233 0.92392 0.92349 0.91090 0.92943 0.84456 0.85616 0.91926 0.91918 0.75591 0.94043 0.94039 0.92357 0.85620 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.29 71.98 0.60 -1.07 16 2 C -0.03 -0.39 0.85 -52.93 -0.05 -0.44 16 3 C -0.14 -1.60 7.13 71.98 0.51 -1.08 16 4 C -0.14 -1.53 8.29 71.98 0.60 -0.93 16 5 C -0.07 -1.15 4.76 -19.87 -0.09 -1.24 16 6 C -0.12 -2.22 8.71 22.27 0.19 -2.02 16 7 C -0.11 -2.33 9.70 22.27 0.22 -2.12 16 8 C -0.12 -2.83 5.25 -19.87 -0.10 -2.94 16 9 C 0.16 5.02 5.80 85.63 0.50 5.51 16 10 N -0.72 -25.75 5.55 -466.79 -2.59 -28.34 16 11 C 0.52 24.61 7.82 87.66 0.69 25.30 16 12 O -0.59 -31.95 15.46 -3.03 -0.05 -31.99 16 13 C 0.01 0.46 5.46 29.10 0.16 0.62 16 14 C -0.54 -32.39 8.92 25.60 0.23 -32.16 16 15 H 0.06 3.50 6.75 -2.91 -0.02 3.48 16 16 C 0.01 0.52 5.46 84.66 0.46 0.98 16 17 N -0.93 -54.94 13.29 21.45 0.28 -54.66 16 18 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 22 C -0.11 -2.34 9.70 22.27 0.22 -2.13 16 23 C -0.13 -2.37 8.98 22.27 0.20 -2.17 16 24 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16 27 H 0.06 0.66 7.51 -2.38 -0.02 0.64 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 30 H 0.06 0.65 7.39 -2.39 -0.02 0.63 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.14 2.01 7.10 -2.91 -0.02 1.99 16 34 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.06 2.00 8.09 -2.38 -0.02 1.98 16 36 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.41 12.71 8.46 -92.71 -0.78 11.93 16 38 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 41 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.14 2.12 5.89 -2.91 -0.02 2.10 16 Total: -1.00 -69.84 345.88 4.21 -65.63 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.22 Total: 17.26 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.32 Total: -15.89 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.30 Total: -83.00 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -69.84 4.21 -65.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057534724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.995 kcal (2) G-P(sol) polarization free energy of solvation -69.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds