Wall clock time and date at job start Mon Mar 30 2020 02:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38232 * 120.00062 * 269.72409 * 4 3 2 6 6 C 1.38241 * 119.99851 * 179.77134 * 5 4 3 7 7 C 1.38230 * 119.99713 * 0.50789 * 6 5 4 8 8 C 1.50704 * 119.99764 * 179.72792 * 7 6 5 9 9 C 1.52998 * 109.47096 * 240.01715 * 8 7 6 10 10 C 1.53001 * 109.47119 * 0.02562 * 8 7 6 11 11 C 1.53005 * 109.47276 * 120.01846 * 8 7 6 12 12 C 1.38233 * 120.00181 * 359.74526 * 7 6 5 13 13 C 1.38228 * 120.00039 * 359.97438 * 12 7 6 14 14 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 15 15 O 1.21693 * 119.99726 * 179.97438 * 14 2 1 16 16 C 1.46371 * 120.00549 * 0.02562 * 14 2 1 17 17 H 1.08001 * 120.00013 * 359.97438 * 16 14 2 18 18 C 1.40050 * 120.00736 * 180.02562 * 16 14 2 19 19 N 1.30674 * 119.99514 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00346 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47222 * 60.00236 * 20 18 16 22 22 H 1.48507 * 109.47054 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47284 * 299.99739 * 20 18 16 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 1.07999 * 120.00321 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.99477 * 180.23160 * 6 5 4 31 31 H 1.09007 * 109.46974 * 59.99757 * 9 8 7 32 32 H 1.08997 * 109.47494 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47301 * 300.00223 * 9 8 7 34 34 H 1.09003 * 109.46937 * 59.99847 * 10 8 7 35 35 H 1.08994 * 109.47018 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46811 * 300.00158 * 10 8 7 37 37 H 1.08997 * 109.46880 * 59.99924 * 11 8 7 38 38 H 1.08997 * 109.46720 * 179.97438 * 11 8 7 39 39 H 1.08998 * 109.46746 * 300.00048 * 11 8 7 40 40 H 1.07999 * 119.99981 * 179.97438 * 12 7 6 41 41 H 1.08006 * 119.99980 * 179.97438 * 13 12 7 42 42 H 0.97000 * 120.00227 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5299 2.5064 2.0706 6 6 1.7581 2.9015 3.3756 7 6 2.9100 2.5024 4.0271 8 6 3.1617 2.9381 5.4476 9 6 4.4602 3.7447 5.5112 10 6 1.9975 3.8067 5.9285 11 6 3.2827 1.7052 6.3455 12 6 3.8313 1.7039 3.3755 13 6 3.6004 1.3041 2.0726 14 6 2.1388 -1.1672 -0.0005 15 8 3.3558 -1.1672 -0.0010 16 6 1.4070 -2.4348 -0.0017 17 1 0.3270 -2.4349 -0.0017 18 6 2.1071 -3.6478 -0.0017 19 7 3.4139 -3.6478 -0.0011 20 14 1.1731 -5.2654 -0.0024 21 1 0.3198 -5.3438 -1.2153 22 1 2.1381 -6.3942 -0.0016 23 1 0.3189 -5.3444 1.2098 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 0.6323 2.8223 1.5599 30 1 1.0384 3.5256 3.8844 31 1 4.3741 4.6231 4.8715 32 1 4.6421 4.0603 6.5386 33 1 5.2895 3.1258 5.1687 34 1 1.0725 3.2319 5.8832 35 1 2.1798 4.1222 6.9557 36 1 1.9112 4.6851 5.2888 37 1 4.1120 1.0863 6.0030 38 1 3.4651 2.0204 7.3728 39 1 2.3576 1.1306 6.3002 40 1 4.7315 1.3925 3.8845 41 1 4.3205 0.6806 1.5634 42 1 3.8989 -4.4878 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057534726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:27 Heat of formation + Delta-G solvation = -26.283583 kcal Electronic energy + Delta-G solvation = -21397.247972 eV Core-core repulsion = 18341.634462 eV Total energy + Delta-G solvation = -3055.613510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.63030 -37.74303 -36.10490 -33.77484 -32.41873 -30.68011 -30.49093 -27.35019 -27.22881 -26.90806 -25.83494 -24.27645 -21.88404 -21.62128 -19.23921 -18.84811 -16.48075 -16.24067 -15.57925 -14.91442 -14.74476 -14.48641 -14.21564 -14.11260 -13.95189 -13.48183 -13.06555 -12.94433 -12.59851 -12.35967 -12.04520 -11.80219 -11.68617 -11.57641 -11.45397 -11.30261 -11.28140 -11.16556 -10.93439 -10.88333 -10.81793 -10.36448 -10.28745 -10.17558 -10.09741 -8.83355 -8.41315 -8.18221 -7.51434 -7.20146 -6.17571 -4.62709 1.79007 1.91248 3.15919 3.20931 3.22525 4.06306 4.20019 4.57710 4.69546 4.81726 4.82506 5.02892 5.32837 5.36814 5.42924 5.50350 5.53476 5.60881 5.74014 5.75803 5.83996 5.86202 5.87008 5.92114 6.02046 6.04244 6.09043 6.11358 6.31890 6.32380 6.35010 6.52117 6.53971 6.57295 6.61761 6.92753 7.04449 7.22825 7.45761 7.50992 7.65933 8.15167 8.36498 9.03767 9.44450 10.59316 10.78191 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.004511 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.526252 B = 6205.084056 C = 6615.119237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.642 5.642 3 C 0.162 3.838 4 C -0.090 4.090 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.082 4.082 8 C -0.027 4.027 9 C -0.137 4.137 10 C -0.141 4.141 11 C -0.138 4.138 12 C -0.120 4.120 13 C -0.087 4.087 14 C 0.558 3.442 15 O -0.575 6.575 16 C -0.543 4.543 17 H 0.071 0.929 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.905 3.095 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.268 1.268 24 H 0.029 0.971 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.130 0.870 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 12.706 8.737 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.380 5.380 3 C 0.038 3.962 4 C -0.092 4.092 5 C -0.131 4.131 6 C -0.149 4.149 7 C -0.082 4.082 8 C -0.027 4.027 9 C -0.194 4.194 10 C -0.198 4.198 11 C -0.196 4.196 12 C -0.138 4.138 13 C -0.105 4.105 14 C 0.364 3.636 15 O -0.457 6.457 16 C -0.580 4.580 17 H 0.089 0.911 18 C -0.131 4.131 19 N -0.396 5.396 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.148 0.852 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.273 12.577 8.710 15.466 hybrid contribution -0.667 -0.882 0.079 1.108 sum -2.939 11.695 8.788 14.922 Atomic orbital electron populations 1.21393 0.82257 1.00934 0.99543 1.48023 1.05051 1.04916 1.80000 1.19991 0.98320 0.86784 0.91146 1.20549 0.94175 0.96132 0.98303 1.20958 0.98651 0.98698 0.94801 1.20984 0.97379 1.01618 0.94879 1.19654 0.95102 0.98661 0.94792 1.19448 0.95812 0.95491 0.91987 1.21875 0.96445 0.99844 1.01231 1.21938 0.97909 0.99446 1.00542 1.21888 1.02362 0.96947 0.98373 1.20922 0.99195 0.98697 0.94991 1.21274 0.97537 0.97370 0.94323 1.18218 0.87009 0.82160 0.76188 1.90569 1.13923 1.86185 1.55033 1.20974 0.93640 0.89301 1.54090 0.91132 1.25715 0.94602 1.00211 0.92614 1.70006 1.07010 1.27295 1.35269 0.86478 0.79894 0.81214 0.79446 1.19261 1.20559 1.19310 0.95230 0.94164 0.90995 0.90208 0.92188 0.86898 0.86450 0.92643 0.92747 0.92394 0.92323 0.92773 0.92418 0.92337 0.92753 0.92471 0.86847 0.85190 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.95 10.19 59.85 0.61 2.56 16 2 N -0.64 -14.76 2.86 -184.62 -0.53 -15.29 16 3 C 0.16 3.22 5.58 -5.19 -0.03 3.19 16 4 C -0.09 -1.70 5.46 -104.63 -0.57 -2.27 16 5 C -0.11 -1.82 9.70 -39.58 -0.38 -2.21 16 6 C -0.13 -1.93 8.98 -39.58 -0.36 -2.29 16 7 C -0.08 -1.22 4.76 -104.62 -0.50 -1.71 16 8 C -0.03 -0.32 0.85 -155.66 -0.13 -0.46 16 9 C -0.14 -1.45 8.29 37.16 0.31 -1.14 16 10 C -0.14 -1.42 7.13 37.16 0.27 -1.16 16 11 C -0.14 -1.61 8.29 37.16 0.31 -1.31 16 12 C -0.12 -2.03 8.71 -39.59 -0.34 -2.37 16 13 C -0.09 -1.71 9.70 -39.59 -0.38 -2.09 16 14 C 0.56 15.85 7.61 -12.99 -0.10 15.75 16 15 O -0.57 -18.12 14.12 5.20 0.07 -18.05 16 16 C -0.54 -15.34 8.74 -35.63 -0.31 -15.65 16 17 H 0.07 1.83 5.99 -52.49 -0.31 1.51 16 18 C 0.09 2.46 5.50 -17.36 -0.10 2.37 16 19 N -0.77 -22.91 11.83 55.55 0.66 -22.25 16 20 Si 0.91 20.21 29.56 -169.99 -5.02 15.19 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 26 H 0.07 1.39 6.09 -51.93 -0.32 1.08 16 27 H 0.08 1.74 7.36 -51.93 -0.38 1.35 16 28 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.12 1.45 5.90 -52.49 -0.31 1.14 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.63 7.39 -51.93 -0.38 0.25 16 34 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.06 0.71 7.39 -51.93 -0.38 0.33 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 1.75 7.10 -52.49 -0.37 1.37 16 41 H 0.13 2.88 7.58 -52.48 -0.40 2.49 16 42 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -33.04 339.94 -7.96 -41.01 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.55 Total: 3.05 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.71 Total: -8.78 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.13 Total: -37.54 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.07 Total: -18.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.04 -7.96 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057534726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.723 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds