Wall clock time and date at job start Mon Mar 30 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.50700 * 109.46743 * 90.00098 * 3 2 1 5 5 C 1.38232 * 120.00062 * 269.72409 * 4 3 2 6 6 C 1.38241 * 119.99851 * 179.77134 * 5 4 3 7 7 C 1.38230 * 119.99713 * 0.50789 * 6 5 4 8 8 C 1.50704 * 119.99764 * 179.72792 * 7 6 5 9 9 C 1.52998 * 109.47096 * 240.01715 * 8 7 6 10 10 C 1.53001 * 109.47119 * 0.02562 * 8 7 6 11 11 C 1.53005 * 109.47276 * 120.01846 * 8 7 6 12 12 C 1.38233 * 120.00181 * 359.74526 * 7 6 5 13 13 C 1.38228 * 120.00039 * 359.97438 * 12 7 6 14 14 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 15 15 O 1.21693 * 119.99726 * 179.97438 * 14 2 1 16 16 C 1.46371 * 120.00549 * 0.02562 * 14 2 1 17 17 H 1.08001 * 120.00013 * 359.97438 * 16 14 2 18 18 C 1.40050 * 120.00736 * 180.02562 * 16 14 2 19 19 N 1.30674 * 119.99514 * 359.97438 * 18 16 14 20 20 Si 1.86793 * 120.00346 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47222 * 60.00236 * 20 18 16 22 22 H 1.48507 * 109.47054 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47284 * 299.99739 * 20 18 16 24 24 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 25 25 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 26 26 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 27 27 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 28 28 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 29 29 H 1.07999 * 120.00321 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.99477 * 180.23160 * 6 5 4 31 31 H 1.09007 * 109.46974 * 59.99757 * 9 8 7 32 32 H 1.08997 * 109.47494 * 179.97438 * 9 8 7 33 33 H 1.08997 * 109.47301 * 300.00223 * 9 8 7 34 34 H 1.09003 * 109.46937 * 59.99847 * 10 8 7 35 35 H 1.08994 * 109.47018 * 180.02562 * 10 8 7 36 36 H 1.09007 * 109.46811 * 300.00158 * 10 8 7 37 37 H 1.08997 * 109.46880 * 59.99924 * 11 8 7 38 38 H 1.08997 * 109.46720 * 179.97438 * 11 8 7 39 39 H 1.08998 * 109.46746 * 300.00048 * 11 8 7 40 40 H 1.07999 * 119.99981 * 179.97438 * 12 7 6 41 41 H 1.08006 * 119.99980 * 179.97438 * 13 12 7 42 42 H 0.97000 * 120.00227 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 6 1.5299 2.5064 2.0706 6 6 1.7581 2.9015 3.3756 7 6 2.9100 2.5024 4.0271 8 6 3.1617 2.9381 5.4476 9 6 4.4602 3.7447 5.5112 10 6 1.9975 3.8067 5.9285 11 6 3.2827 1.7052 6.3455 12 6 3.8313 1.7039 3.3755 13 6 3.6004 1.3041 2.0726 14 6 2.1388 -1.1672 -0.0005 15 8 3.3558 -1.1672 -0.0010 16 6 1.4070 -2.4348 -0.0017 17 1 0.3270 -2.4349 -0.0017 18 6 2.1071 -3.6478 -0.0017 19 7 3.4139 -3.6478 -0.0011 20 14 1.1731 -5.2654 -0.0024 21 1 0.3198 -5.3438 -1.2153 22 1 2.1381 -6.3942 -0.0016 23 1 0.3189 -5.3444 1.2098 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5139 27 1 3.1500 1.1383 -0.5139 28 1 1.6085 2.0284 -0.5138 29 1 0.6323 2.8223 1.5599 30 1 1.0384 3.5256 3.8844 31 1 4.3741 4.6231 4.8715 32 1 4.6421 4.0603 6.5386 33 1 5.2895 3.1258 5.1687 34 1 1.0725 3.2319 5.8832 35 1 2.1798 4.1222 6.9557 36 1 1.9112 4.6851 5.2888 37 1 4.1120 1.0863 6.0030 38 1 3.4651 2.0204 7.3728 39 1 2.3576 1.1306 6.3002 40 1 4.7315 1.3925 3.8845 41 1 4.3205 0.6806 1.5634 42 1 3.8989 -4.4878 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057534726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:26 Heat of formation + Delta-G solvation = -45.321762 kcal Electronic energy + Delta-G solvation = -21398.073529 eV Core-core repulsion = 18341.634462 eV Total energy + Delta-G solvation = -3056.439068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90688 -39.54735 -37.41825 -35.61120 -34.57312 -31.97373 -31.91988 -28.73775 -28.20026 -28.10738 -27.56783 -25.97443 -23.18648 -23.01357 -21.06650 -20.02269 -18.40726 -17.67701 -17.46446 -16.33761 -16.26530 -16.05947 -15.74265 -15.41976 -15.11308 -14.57515 -14.38604 -14.34351 -14.23261 -13.59594 -13.43006 -13.23081 -13.07379 -12.95973 -12.80435 -12.74387 -12.68652 -12.53787 -12.52014 -12.22903 -12.08380 -12.00803 -11.80348 -11.49917 -11.32449 -10.91106 -9.85360 -9.75470 -9.37985 -9.05063 -8.26791 -6.82643 0.45741 0.56387 1.38051 1.41667 1.52699 2.23775 2.48038 2.73849 3.19219 3.61996 3.69806 3.82911 4.06557 4.13808 4.14372 4.18791 4.40741 4.42080 4.58341 4.59130 4.71750 4.77254 4.77888 4.87151 4.90831 4.93577 5.01305 5.03986 5.04201 5.09130 5.19536 5.21921 5.28246 5.37068 5.40614 5.44232 5.63139 5.70979 5.77421 5.90204 6.15092 6.19612 6.41901 6.88877 7.44450 8.50218 8.69487 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022085 B = 0.004511 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.526252 B = 6205.084056 C = 6615.119237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.645 5.645 3 C 0.163 3.837 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.075 4.075 8 C -0.028 4.028 9 C -0.136 4.136 10 C -0.139 4.139 11 C -0.139 4.139 12 C -0.129 4.129 13 C -0.118 4.118 14 C 0.540 3.460 15 O -0.623 6.623 16 C -0.571 4.571 17 H 0.091 0.909 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.993 3.007 21 H -0.252 1.252 22 H -0.275 1.275 23 H -0.256 1.256 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 14.103 10.426 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.381 5.381 3 C 0.040 3.960 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.143 4.143 7 C -0.075 4.075 8 C -0.028 4.028 9 C -0.193 4.193 10 C -0.196 4.196 11 C -0.196 4.196 12 C -0.147 4.147 13 C -0.137 4.137 14 C 0.345 3.655 15 O -0.510 6.510 16 C -0.608 4.608 17 H 0.108 0.892 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.812 3.188 21 H -0.176 1.176 22 H -0.200 1.200 23 H -0.180 1.180 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.438 14.026 10.396 18.285 hybrid contribution 0.327 -1.193 -0.402 1.301 sum -5.111 12.833 9.994 17.049 Atomic orbital electron populations 1.21574 0.79452 1.02688 1.00516 1.47890 1.06906 1.04552 1.78716 1.20081 0.97153 0.86418 0.92394 1.20462 0.94902 0.97980 0.97869 1.21234 0.98596 0.97310 0.95382 1.21424 0.97566 1.00934 0.94338 1.20069 0.94249 0.96858 0.96354 1.19552 0.97491 0.96040 0.89729 1.21869 0.95338 0.99427 1.02639 1.21935 0.96689 0.99162 1.01856 1.21899 1.01273 0.96690 0.99768 1.20999 1.00252 0.99409 0.93998 1.21101 0.97987 0.98752 0.95894 1.18615 0.86742 0.84132 0.75981 1.90531 1.16032 1.87444 1.57000 1.21515 0.94801 0.90000 1.54448 0.89153 1.26963 0.95476 1.04841 0.91280 1.70195 1.09481 1.28747 1.36727 0.85150 0.78308 0.75040 0.80309 1.17563 1.20022 1.18020 0.94482 0.89862 0.91804 0.93782 0.88101 0.83930 0.82904 0.92492 0.90549 0.93532 0.92314 0.90857 0.91588 0.93806 0.90317 0.93456 0.86550 0.89743 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.61 10.19 127.77 1.30 4.92 16 2 N -0.64 -30.07 2.86 -856.25 -2.45 -32.52 16 3 C 0.16 6.65 5.58 85.63 0.48 7.12 16 4 C -0.11 -4.27 5.46 -19.87 -0.11 -4.37 16 5 C -0.11 -3.22 9.70 22.27 0.22 -3.00 16 6 C -0.13 -3.33 8.98 22.27 0.20 -3.13 16 7 C -0.08 -2.13 4.76 -19.87 -0.09 -2.23 16 8 C -0.03 -0.60 0.85 -52.93 -0.05 -0.64 16 9 C -0.14 -2.57 8.29 71.98 0.60 -1.97 16 10 C -0.14 -2.24 7.13 71.98 0.51 -1.72 16 11 C -0.14 -3.01 8.29 71.98 0.60 -2.41 16 12 C -0.13 -4.53 8.71 22.27 0.19 -4.33 16 13 C -0.12 -5.04 9.70 22.27 0.22 -4.82 16 14 C 0.54 32.05 7.61 86.36 0.66 32.70 16 15 O -0.62 -42.27 14.12 -4.33 -0.06 -42.34 16 16 C -0.57 -32.96 8.74 24.83 0.22 -32.75 16 17 H 0.09 4.66 5.99 -2.91 -0.02 4.65 16 18 C 0.03 1.67 5.50 85.30 0.47 2.13 16 19 N -0.82 -51.38 11.83 21.84 0.26 -51.12 16 20 Si 0.99 41.76 29.56 68.60 2.03 43.79 16 21 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.08 2.27 7.89 -2.38 -0.02 2.25 16 26 H 0.06 2.38 6.09 -2.39 -0.01 2.37 16 27 H 0.04 2.07 7.36 -2.39 -0.02 2.06 16 28 H 0.10 3.19 7.84 -2.39 -0.02 3.17 16 29 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.15 3.02 5.90 -2.91 -0.02 3.01 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.98 7.39 -2.39 -0.02 0.96 16 34 H 0.06 0.96 7.51 -2.39 -0.02 0.94 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.97 7.51 -2.38 -0.02 0.95 16 37 H 0.04 1.06 7.39 -2.39 -0.02 1.04 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 3.86 7.10 -2.91 -0.02 3.84 16 41 H 0.08 4.28 7.58 -2.91 -0.02 4.25 16 42 H 0.27 15.51 8.29 -92.71 -0.77 14.74 16 Total: -1.00 -77.73 339.94 6.18 -71.55 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.99 Total: 25.15 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.41 Total: -14.51 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -2.19 Total: -83.64 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.06 Total: -42.34 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -77.73 6.18 -71.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057534726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -77.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds