Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46751 * 2 1 4 4 C 1.53006 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47126 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47126 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47138 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99933 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47256 * 299.99510 * 1 2 3 25 25 H 1.08994 * 109.47508 * 59.99980 * 1 2 3 26 26 H 1.09008 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47256 * 240.00490 * 2 1 3 28 28 H 1.08994 * 109.47508 * 120.00020 * 2 1 3 29 29 H 1.08997 * 109.47561 * 60.00202 * 3 2 1 30 30 H 1.09003 * 109.47121 * 299.99980 * 3 2 1 31 31 H 1.09004 * 109.46887 * 59.99949 * 4 3 2 32 32 H 1.09003 * 109.46877 * 299.99851 * 4 3 2 33 33 H 1.08997 * 109.47561 * 59.99923 * 5 4 3 34 34 H 1.09003 * 109.47121 * 299.99701 * 5 4 3 35 35 H 1.08997 * 109.46964 * 59.99557 * 6 5 4 36 36 H 1.09002 * 109.46546 * 300.00282 * 6 5 4 37 37 H 0.97004 * 120.00572 * 0.02562 * 7 6 5 38 38 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 39 39 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 42 42 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 7 6.0981 4.2664 0.0000 8 6 7.4232 4.5127 0.0005 9 8 8.2133 3.5886 0.0005 10 6 7.9153 5.9048 0.0011 11 6 7.0035 6.9673 0.0064 12 6 7.4530 8.2541 0.0016 13 6 8.8377 8.5142 0.0026 14 6 9.3081 9.8446 0.0041 15 1 10.2839 10.0719 0.4070 16 6 8.5083 10.8715 -0.5176 17 7 7.4967 10.5822 -1.2920 18 14 8.8894 12.6531 -0.1053 19 1 9.8254 13.2060 -1.1169 20 1 7.6316 13.4425 -0.1110 21 1 9.5143 12.7271 1.2398 22 6 9.7513 7.4417 0.0026 23 6 9.2923 6.1581 0.0012 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8899 30 1 1.6765 1.9563 -0.8900 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9287 0.8892 33 1 3.7169 3.3985 0.8904 34 1 3.7161 3.3995 -0.8896 35 1 5.9732 2.3717 -0.8902 36 1 5.9732 2.3709 0.8898 37 1 5.4678 5.0037 0.0004 38 1 5.9422 6.7669 0.0105 39 1 6.7489 9.0731 0.0016 40 1 6.9432 11.2926 -1.6526 41 1 10.8137 7.6361 0.0038 42 1 9.9918 5.3353 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -61.807333 kcal Electronic energy + Delta-G solvation = -19820.599375 eV Core-core repulsion = 16763.445439 eV Total energy + Delta-G solvation = -3057.153936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.09083 -37.25895 -36.62104 -34.59199 -33.85664 -32.17564 -30.21269 -29.44005 -28.08986 -25.88677 -23.90086 -21.85732 -21.40223 -21.19314 -20.80627 -19.45698 -17.52180 -16.74315 -16.22338 -15.62381 -15.24951 -15.05936 -14.24819 -13.99535 -13.89778 -13.74195 -13.37060 -13.11183 -12.83637 -12.72113 -12.34346 -12.08309 -11.92404 -11.71619 -11.63760 -11.36714 -11.25360 -11.13013 -11.01080 -10.93769 -10.78153 -10.68216 -10.61184 -10.05328 -9.55496 -9.34979 -8.94390 -8.55643 -7.71494 -7.52731 -7.02504 -4.59844 2.24416 2.90981 2.94540 3.00725 3.03982 3.74217 3.81614 3.89228 4.54977 4.58065 4.66238 4.79272 4.94778 5.07346 5.19741 5.30220 5.48247 5.55574 5.57163 5.60639 5.67058 5.73478 5.82303 5.85164 5.97240 5.99007 6.05303 6.13544 6.20437 6.28158 6.32745 6.77349 6.83364 6.96608 7.07924 7.14109 7.44349 7.66151 7.79872 7.86453 8.07796 8.27154 8.40407 8.63646 8.75806 9.10592 9.89660 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.002734 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.995418 B =10237.435910 C =11160.088698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.132 4.132 6 C 0.123 3.877 7 N -0.743 5.743 8 C 0.570 3.430 9 O -0.577 6.577 10 C -0.283 4.283 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.128 3.872 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.238 4.238 23 C -0.023 4.023 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.695 -9.594 1.589 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.170 4.170 6 C -0.001 4.001 7 N -0.396 5.396 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.288 4.288 11 C -0.083 4.083 12 C -0.196 4.196 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.397 5.397 18 Si 0.737 3.263 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.337 -10.152 1.435 15.286 hybrid contribution -0.292 1.193 0.005 1.228 sum -11.629 -8.959 1.440 14.751 Atomic orbital electron populations 1.21783 0.96031 1.01454 1.01801 1.21544 0.95729 0.97080 1.02015 1.21624 0.95331 0.96656 1.02159 1.21514 0.95290 0.96209 1.02451 1.21812 0.94831 0.97605 1.02711 1.21186 0.92936 0.84281 1.01695 1.45924 1.07801 1.07682 1.78230 1.18599 0.80982 0.89743 0.74190 1.90626 1.55574 1.46822 1.52897 1.18924 0.94279 0.90219 1.25353 1.20476 0.96185 0.93295 0.98295 1.20969 0.96129 0.94989 1.07562 1.17795 0.91725 0.92688 0.85309 1.19827 1.02664 0.91435 1.33158 0.89743 1.26097 0.93713 1.02410 0.92501 1.69741 1.13474 1.36178 1.20308 0.86219 0.79108 0.80526 0.80479 1.19174 1.19815 1.18140 1.20725 0.98119 0.92255 1.14654 1.20372 0.93574 0.96033 0.94252 0.92786 0.92783 0.92924 0.92059 0.92065 0.91970 0.91961 0.91714 0.91733 0.91396 0.91363 0.92238 0.92241 0.76812 0.89329 0.86202 0.90268 0.88370 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 4 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 5 C -0.13 -1.37 5.33 -26.73 -0.14 -1.51 16 6 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 7 N -0.74 -12.72 5.50 -61.31 -0.34 -13.05 16 8 C 0.57 12.45 7.76 -12.42 -0.10 12.35 16 9 O -0.58 -14.13 16.32 5.29 0.09 -14.05 16 10 C -0.28 -6.58 5.89 -104.73 -0.62 -7.20 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 12 C -0.18 -4.36 8.63 -39.28 -0.34 -4.70 16 13 C 0.13 3.28 5.57 -106.80 -0.59 2.69 16 14 C -0.44 -11.06 9.05 -37.75 -0.34 -11.40 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 17 N -0.77 -18.58 10.95 55.56 0.61 -17.97 16 18 Si 0.91 17.29 29.59 -169.99 -5.03 12.26 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 23 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 6.02 6.47 -40.82 -0.26 5.76 16 38 H 0.09 1.67 6.37 -52.49 -0.33 1.34 16 39 H 0.12 2.98 6.18 -52.48 -0.32 2.65 16 40 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 42 H 0.10 2.34 7.63 -52.49 -0.40 1.94 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -28.34 348.50 -9.66 -38.00 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.79 Total: 8.87 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.45 Total: -19.31 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.27 Total: -31.02 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.05 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.34 -9.66 -38.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.807 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds