Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46751 * 2 1 4 4 C 1.53006 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47126 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47126 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47138 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99933 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47256 * 299.99510 * 1 2 3 25 25 H 1.08994 * 109.47508 * 59.99980 * 1 2 3 26 26 H 1.09008 * 109.46823 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47256 * 240.00490 * 2 1 3 28 28 H 1.08994 * 109.47508 * 120.00020 * 2 1 3 29 29 H 1.08997 * 109.47561 * 60.00202 * 3 2 1 30 30 H 1.09003 * 109.47121 * 299.99980 * 3 2 1 31 31 H 1.09004 * 109.46887 * 59.99949 * 4 3 2 32 32 H 1.09003 * 109.46877 * 299.99851 * 4 3 2 33 33 H 1.08997 * 109.47561 * 59.99923 * 5 4 3 34 34 H 1.09003 * 109.47121 * 299.99701 * 5 4 3 35 35 H 1.08997 * 109.46964 * 59.99557 * 6 5 4 36 36 H 1.09002 * 109.46546 * 300.00282 * 6 5 4 37 37 H 0.97004 * 120.00572 * 0.02562 * 7 6 5 38 38 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 39 39 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 42 42 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 7 6.0981 4.2664 0.0000 8 6 7.4232 4.5127 0.0005 9 8 8.2133 3.5886 0.0005 10 6 7.9153 5.9048 0.0011 11 6 7.0035 6.9673 0.0064 12 6 7.4530 8.2541 0.0016 13 6 8.8377 8.5142 0.0026 14 6 9.3081 9.8446 0.0041 15 1 10.2839 10.0719 0.4070 16 6 8.5083 10.8715 -0.5176 17 7 7.4967 10.5822 -1.2920 18 14 8.8894 12.6531 -0.1053 19 1 9.8254 13.2060 -1.1169 20 1 7.6316 13.4425 -0.1110 21 1 9.5143 12.7271 1.2398 22 6 9.7513 7.4417 0.0026 23 6 9.2923 6.1581 0.0012 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9564 0.8899 30 1 1.6765 1.9563 -0.8900 31 1 3.9329 0.9289 -0.8909 32 1 3.9337 0.9287 0.8892 33 1 3.7169 3.3985 0.8904 34 1 3.7161 3.3995 -0.8896 35 1 5.9732 2.3717 -0.8902 36 1 5.9732 2.3709 0.8898 37 1 5.4678 5.0037 0.0004 38 1 5.9422 6.7669 0.0105 39 1 6.7489 9.0731 0.0016 40 1 6.9432 11.2926 -1.6526 41 1 10.8137 7.6361 0.0038 42 1 9.9918 5.3353 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -75.772722 kcal Electronic energy + Delta-G solvation = -19821.204959 eV Core-core repulsion = 16763.445439 eV Total energy + Delta-G solvation = -3057.759520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77960 -38.96532 -37.56704 -35.77382 -35.66424 -33.25992 -31.88752 -31.30093 -29.14658 -27.52415 -24.96965 -23.43921 -22.80108 -22.23739 -21.84285 -21.07443 -19.36668 -18.38746 -17.29976 -17.02697 -16.80933 -16.08933 -15.75408 -15.54404 -15.09291 -15.06018 -14.67943 -14.42683 -13.99341 -13.88134 -13.83589 -13.63860 -13.22516 -13.11422 -12.84010 -12.67077 -12.49825 -12.40600 -12.34565 -11.80414 -11.78259 -11.67517 -11.52125 -11.37418 -11.33487 -11.11991 -10.69252 -10.06579 -9.57762 -9.39866 -8.78824 -6.48435 0.43608 1.14531 1.39066 1.42875 1.54965 2.11832 2.18547 2.41286 2.78861 3.68631 3.77350 3.98695 4.05721 4.22150 4.25533 4.31411 4.40413 4.43973 4.48076 4.55779 4.72506 4.85898 4.90990 4.92153 4.93501 5.03162 5.07368 5.11560 5.15671 5.22205 5.25802 5.29964 5.38120 5.48953 5.53985 5.57121 5.61401 5.82024 5.94351 5.99202 6.22572 6.53764 6.71755 6.77072 6.88742 7.44033 8.16542 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.002734 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.995418 B =10237.435910 C =11160.088698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.117 4.117 4 C -0.114 4.114 5 C -0.121 4.121 6 C 0.121 3.879 7 N -0.726 5.726 8 C 0.568 3.432 9 O -0.609 6.609 10 C -0.294 4.294 11 C -0.054 4.054 12 C -0.197 4.197 13 C 0.100 3.900 14 C -0.473 4.473 15 H 0.085 0.915 16 C 0.037 3.963 17 N -0.799 5.799 18 Si 0.988 3.012 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.258 1.258 22 C -0.252 4.252 23 C -0.035 4.035 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.297 0.703 41 H 0.104 0.896 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.422 -9.139 1.712 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.154 4.154 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.003 4.003 7 N -0.378 5.378 8 C 0.362 3.638 9 O -0.494 6.494 10 C -0.298 4.298 11 C -0.073 4.073 12 C -0.216 4.216 13 C 0.097 3.903 14 C -0.500 4.500 15 H 0.103 0.897 16 C -0.182 4.182 17 N -0.423 5.423 18 Si 0.808 3.192 19 H -0.186 1.186 20 H -0.185 1.185 21 H -0.181 1.181 22 C -0.271 4.271 23 C -0.054 4.054 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.112 -9.715 1.554 16.392 hybrid contribution 0.214 0.961 -0.060 0.987 sum -12.898 -8.753 1.494 15.659 Atomic orbital electron populations 1.21783 0.95528 1.01866 1.01901 1.21546 0.96190 0.96654 1.02056 1.21589 0.94342 0.97141 1.02353 1.21493 0.96077 0.95075 1.02533 1.21752 0.91661 0.98901 1.03514 1.21391 0.95538 0.82251 1.01100 1.45813 1.06320 1.09546 1.76125 1.18455 0.82372 0.88717 0.74282 1.90606 1.56823 1.47371 1.54582 1.19203 0.94230 0.91503 1.24891 1.20736 0.97943 0.92151 0.96436 1.21014 0.95742 0.95781 1.09049 1.18161 0.92604 0.93459 0.86092 1.20100 1.03480 0.92105 1.34343 0.89669 1.26936 0.93191 1.06419 0.91662 1.69758 1.14036 1.38093 1.20382 0.85105 0.79286 0.74793 0.80043 1.18606 1.18543 1.18123 1.20861 0.98518 0.92438 1.15332 1.20526 0.94453 0.95907 0.94540 0.92660 0.92712 0.92414 0.92080 0.92020 0.91720 0.91811 0.91748 0.91657 0.90481 0.90629 0.92951 0.92774 0.75478 0.85714 0.86725 0.89169 0.87768 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -1.61 5.93 30.59 0.18 -1.43 16 3 C -0.12 -1.59 5.21 30.60 0.16 -1.43 16 4 C -0.11 -1.79 5.21 30.60 0.16 -1.63 16 5 C -0.12 -2.22 5.33 30.60 0.16 -2.06 16 6 C 0.12 3.24 5.67 86.38 0.49 3.73 16 7 N -0.73 -23.65 5.50 -466.16 -2.57 -26.22 16 8 C 0.57 24.49 7.76 86.73 0.67 25.16 16 9 O -0.61 -29.88 16.32 -3.97 -0.06 -29.95 16 10 C -0.29 -13.61 5.89 -19.93 -0.12 -13.73 16 11 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 12 C -0.20 -9.72 8.63 22.47 0.19 -9.53 16 13 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 14 C -0.47 -23.94 9.05 23.46 0.21 -23.73 16 15 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 16 C 0.04 1.71 5.15 85.35 0.44 2.14 16 17 N -0.80 -38.10 10.95 21.87 0.24 -37.86 16 18 Si 0.99 34.68 29.59 68.60 2.03 36.71 16 19 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 21 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 22 C -0.25 -12.65 9.73 22.47 0.22 -12.43 16 23 C -0.03 -1.71 9.52 22.25 0.21 -1.50 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.41 11.37 6.47 -92.71 -0.60 10.77 16 38 H 0.13 4.42 6.37 -2.91 -0.02 4.40 16 39 H 0.11 5.72 6.18 -2.91 -0.02 5.70 16 40 H 0.30 12.54 8.29 -92.70 -0.77 11.78 16 41 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.10 4.86 7.63 -2.91 -0.02 4.83 16 Total: -1.00 -60.97 348.50 3.82 -57.15 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.39 Total: 34.68 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.79 Total: -34.50 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -2.33 Total: -64.08 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.06 Total: -29.95 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -60.97 3.82 -57.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.626 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds