Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 C 1.53005 * 109.47074 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47074 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47191 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.09004 * 109.47250 * 300.00302 * 1 2 3 25 25 H 1.09005 * 109.47069 * 60.00126 * 1 2 3 26 26 H 1.08998 * 109.47635 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47281 * 239.99387 * 2 1 3 28 28 H 1.09005 * 109.47069 * 119.99874 * 2 1 3 29 29 H 1.09004 * 109.47270 * 59.99711 * 3 2 1 30 30 H 1.08999 * 109.47133 * 299.99486 * 3 2 1 31 31 H 1.09004 * 109.47249 * 59.99771 * 4 3 2 32 32 H 1.08999 * 109.46781 * 299.99775 * 4 3 2 33 33 H 1.08999 * 109.46806 * 59.99763 * 5 4 3 34 34 H 1.09005 * 109.47011 * 299.99982 * 5 4 3 35 35 H 1.09004 * 109.47250 * 59.99698 * 6 5 4 36 36 H 1.09005 * 109.47069 * 299.99874 * 6 5 4 37 37 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 39 39 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 40 40 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 41 41 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 42 42 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 7 6.0984 4.2661 -0.0012 8 6 7.4234 4.5123 -0.0009 9 8 8.2137 3.5880 -0.0001 10 6 7.9149 5.9023 -0.0016 11 6 7.0174 6.9643 -0.0720 12 6 7.4827 8.2659 -0.0783 13 6 8.8435 8.5318 -0.0085 14 6 9.7545 7.5033 0.0678 15 6 9.3070 6.1694 0.0748 16 6 10.2316 5.1091 0.1520 17 1 9.9745 4.2063 0.6861 18 6 11.4860 5.2262 -0.4646 19 7 11.6716 6.1148 -1.4040 20 14 12.8910 4.1114 0.0573 21 1 13.6499 4.7546 1.1599 22 1 12.3446 2.8121 0.5247 23 1 13.7956 3.8813 -1.0976 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 3.7163 3.3993 0.8895 34 1 3.7170 3.3983 -0.8905 35 1 5.9733 2.3707 -0.8897 36 1 5.9733 2.3715 0.8903 37 1 5.4681 5.0033 -0.0023 38 1 5.9562 6.7709 -0.1269 39 1 6.7807 9.0843 -0.1378 40 1 9.1901 9.5546 -0.0140 41 1 10.8112 7.7197 0.1222 42 1 10.9244 6.6419 -1.7276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058241950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -58.308927 kcal Electronic energy + Delta-G solvation = -20385.826926 eV Core-core repulsion = 17328.824692 eV Total energy + Delta-G solvation = -3057.002233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.02436 -37.22799 -36.48978 -34.53477 -33.86427 -32.05500 -30.05605 -29.37329 -27.86258 -25.28007 -23.97355 -22.16541 -21.35309 -21.20698 -20.78431 -19.33958 -18.04684 -16.36559 -16.18418 -15.31504 -14.99051 -14.73543 -14.21386 -14.12392 -13.88522 -13.77316 -13.53044 -13.25955 -12.77776 -12.53806 -12.32543 -12.13513 -11.89004 -11.60899 -11.53664 -11.13381 -11.09475 -10.96092 -10.85978 -10.74175 -10.72442 -10.63312 -10.36098 -10.14581 -9.59578 -9.06548 -8.48351 -8.35623 -7.77830 -7.59635 -7.13080 -4.44796 2.25619 2.74235 3.20921 3.32031 3.43005 3.92414 4.05474 4.09521 4.58782 4.65485 4.68471 4.81896 4.97919 5.11738 5.23061 5.32877 5.47750 5.50920 5.58572 5.63941 5.71241 5.76719 5.84364 5.87246 5.91796 6.01214 6.01613 6.12278 6.17863 6.26157 6.29455 6.53789 6.72722 7.00168 7.15299 7.29289 7.50407 7.62411 7.73191 7.90329 8.10973 8.23058 8.40432 8.74827 8.87807 9.39015 10.05578 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.003517 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.987358 B = 7960.531200 C = 9158.615297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.750 5.750 8 C 0.562 3.438 9 O -0.538 6.538 10 C -0.265 4.265 11 C -0.044 4.044 12 C -0.260 4.260 13 C -0.076 4.076 14 C -0.201 4.201 15 C 0.120 3.880 16 C -0.466 4.466 17 H 0.106 0.894 18 C 0.030 3.970 19 N -0.794 5.794 20 Si 1.073 2.927 21 H -0.275 1.275 22 H -0.273 1.273 23 H -0.276 1.276 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.391 0.609 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.880 -6.173 1.993 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.000 4.000 7 N -0.405 5.405 8 C 0.356 3.644 9 O -0.416 6.416 10 C -0.270 4.270 11 C -0.063 4.063 12 C -0.280 4.280 13 C -0.095 4.095 14 C -0.220 4.220 15 C 0.115 3.885 16 C -0.493 4.493 17 H 0.123 0.877 18 C -0.191 4.191 19 N -0.418 5.418 20 Si 0.896 3.104 21 H -0.201 1.201 22 H -0.197 1.197 23 H -0.202 1.202 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.225 0.775 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.675 -7.157 1.686 14.653 hybrid contribution -2.133 0.925 0.157 2.330 sum -14.808 -6.232 1.843 16.171 Atomic orbital electron populations 1.21782 0.96065 1.01450 1.01749 1.21545 0.95683 0.97099 1.02064 1.21621 0.95405 0.96635 1.02048 1.21518 0.95183 0.96296 1.02515 1.21797 0.95060 0.97502 1.02432 1.21139 0.92622 0.84518 1.01680 1.46022 1.07778 1.07290 1.79419 1.18386 0.80692 0.89836 0.75517 1.90675 1.54445 1.46442 1.50076 1.19415 0.94599 0.90384 1.22600 1.20719 0.96365 0.93012 0.96164 1.20240 0.94905 0.95166 1.17647 1.20746 0.93498 0.97254 0.97991 1.21250 0.98395 0.92580 1.09792 1.17522 0.90728 0.92508 0.87721 1.21208 0.97913 1.03042 1.27129 0.87663 1.27276 1.01007 0.97502 0.93319 1.70359 1.37721 1.15165 1.18537 0.83518 0.74070 0.75812 0.76954 1.20060 1.19742 1.20156 0.92812 0.92815 0.92919 0.92037 0.92042 0.92037 0.92029 0.91701 0.91701 0.91560 0.91567 0.92337 0.92335 0.77530 0.89125 0.88907 0.88881 0.87537 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -0.98 5.21 -26.73 -0.14 -1.12 16 4 C -0.12 -1.12 5.21 -26.73 -0.14 -1.25 16 5 C -0.13 -1.43 5.33 -26.73 -0.14 -1.57 16 6 C 0.12 1.91 5.67 -4.05 -0.02 1.88 16 7 N -0.75 -13.58 5.51 -61.38 -0.34 -13.91 16 8 C 0.56 13.32 7.73 -12.52 -0.10 13.23 16 9 O -0.54 -14.57 13.56 5.27 0.07 -14.50 16 10 C -0.27 -6.55 5.92 -104.36 -0.62 -7.17 16 11 C -0.04 -0.93 9.53 -39.22 -0.37 -1.31 16 12 C -0.26 -5.50 10.03 -39.37 -0.39 -5.89 16 13 C -0.08 -1.70 10.01 -39.59 -0.40 -2.09 16 14 C -0.20 -5.06 7.87 -38.88 -0.31 -5.37 16 15 C 0.12 3.23 5.17 -106.54 -0.55 2.68 16 16 C -0.47 -12.99 7.65 -37.81 -0.29 -13.28 16 17 H 0.11 3.08 5.92 -52.49 -0.31 2.76 16 18 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 19 N -0.79 -21.52 12.57 55.56 0.70 -20.82 16 20 Si 1.07 22.85 29.98 -169.99 -5.10 17.75 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.39 6.06 6.51 -40.82 -0.27 5.79 16 38 H 0.09 1.59 6.41 -52.48 -0.34 1.25 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.11 2.73 6.94 -52.49 -0.36 2.37 16 42 H 0.30 8.26 6.55 -40.82 -0.27 8.00 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -30.10 343.47 -9.52 -39.61 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.68 Total: 9.03 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.35 Total: -22.34 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.36 Total: -34.73 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.07 Total: -14.50 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.10 Total: 17.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.10 -9.52 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.695 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds