Wall clock time and date at job start Mon Mar 30 2020 02:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47191 * 2 1 4 4 C 1.53005 * 109.47074 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47074 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47191 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39227 * 120.28510 * 356.68670 * 10 8 7 12 12 C 1.38223 * 120.09723 * 180.28291 * 11 10 8 13 13 C 1.38826 * 120.67197 * 359.69417 * 12 11 10 14 14 C 1.37607 * 120.57000 * 0.02562 * 13 12 11 15 15 C 1.40702 * 119.88222 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32820 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99743 * 145.79457 * 16 15 14 18 18 C 1.40273 * 119.99861 * 325.79822 * 16 15 14 19 19 N 1.30629 * 119.99711 * 340.74144 * 18 16 15 20 20 Si 1.86800 * 120.00012 * 160.74702 * 18 16 15 21 21 H 1.48505 * 109.46791 * 269.99431 * 20 18 16 22 22 H 1.48496 * 109.47300 * 29.99461 * 20 18 16 23 23 H 1.48496 * 109.47010 * 149.99877 * 20 18 16 24 24 H 1.09004 * 109.47250 * 300.00302 * 1 2 3 25 25 H 1.09005 * 109.47069 * 60.00126 * 1 2 3 26 26 H 1.08998 * 109.47635 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47281 * 239.99387 * 2 1 3 28 28 H 1.09005 * 109.47069 * 119.99874 * 2 1 3 29 29 H 1.09004 * 109.47270 * 59.99711 * 3 2 1 30 30 H 1.08999 * 109.47133 * 299.99486 * 3 2 1 31 31 H 1.09004 * 109.47249 * 59.99771 * 4 3 2 32 32 H 1.08999 * 109.46781 * 299.99775 * 4 3 2 33 33 H 1.08999 * 109.46806 * 59.99763 * 5 4 3 34 34 H 1.09005 * 109.47011 * 299.99982 * 5 4 3 35 35 H 1.09004 * 109.47250 * 59.99698 * 6 5 4 36 36 H 1.09005 * 109.47069 * 299.99874 * 6 5 4 37 37 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 38 38 H 1.08005 * 119.95480 * 359.97438 * 11 10 8 39 39 H 1.07993 * 119.66771 * 179.71616 * 12 11 10 40 40 H 1.08002 * 119.71786 * 180.02562 * 13 12 11 41 41 H 1.07995 * 120.05544 * 180.02562 * 14 13 12 42 42 H 0.97003 * 120.00596 * 354.83519 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0000 7 7 6.0984 4.2661 -0.0012 8 6 7.4234 4.5123 -0.0009 9 8 8.2137 3.5880 -0.0001 10 6 7.9149 5.9023 -0.0016 11 6 7.0174 6.9643 -0.0720 12 6 7.4827 8.2659 -0.0783 13 6 8.8435 8.5318 -0.0085 14 6 9.7545 7.5033 0.0678 15 6 9.3070 6.1694 0.0748 16 6 10.2316 5.1091 0.1520 17 1 9.9745 4.2063 0.6861 18 6 11.4860 5.2262 -0.4646 19 7 11.6716 6.1148 -1.4040 20 14 12.8910 4.1114 0.0573 21 1 13.6499 4.7546 1.1599 22 1 12.3446 2.8121 0.5247 23 1 13.7956 3.8813 -1.0976 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9284 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 3.7163 3.3993 0.8895 34 1 3.7170 3.3983 -0.8905 35 1 5.9733 2.3707 -0.8897 36 1 5.9733 2.3715 0.8903 37 1 5.4681 5.0033 -0.0023 38 1 5.9562 6.7709 -0.1269 39 1 6.7807 9.0843 -0.1378 40 1 9.1901 9.5546 -0.0140 41 1 10.8112 7.7197 0.1222 42 1 10.9244 6.6419 -1.7276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058241950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:08 Heat of formation + Delta-G solvation = -74.834216 kcal Electronic energy + Delta-G solvation = -20386.543516 eV Core-core repulsion = 17328.824692 eV Total energy + Delta-G solvation = -3057.718824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82081 -38.89902 -37.53528 -36.04711 -35.51535 -33.22864 -31.77417 -31.18257 -28.93304 -27.10542 -25.16619 -23.74391 -22.77156 -22.27745 -21.84928 -21.03546 -19.93283 -18.08597 -17.03651 -16.93447 -16.52462 -16.13418 -15.83796 -15.73755 -15.44090 -15.03887 -14.68626 -14.45948 -14.06540 -13.94785 -13.82721 -13.58560 -13.13977 -12.93081 -12.71311 -12.50654 -12.49546 -12.40125 -12.06340 -11.94851 -11.80853 -11.68717 -11.58793 -11.38259 -11.34892 -10.96491 -10.36074 -10.01218 -9.61295 -9.50284 -9.10965 -6.47067 0.39298 0.89774 1.45232 1.61409 1.76369 2.24471 2.30249 2.43445 2.73467 3.55378 3.76877 3.96951 4.04547 4.20769 4.20823 4.27464 4.36036 4.44986 4.47236 4.54094 4.69819 4.76068 4.86549 4.88446 4.89950 4.92791 5.05895 5.10352 5.13835 5.20807 5.25178 5.36915 5.42487 5.47578 5.52805 5.59435 5.65486 5.71122 5.89231 5.96233 6.19928 6.33218 6.69002 6.85121 6.92535 7.60336 8.03553 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.003517 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.987358 B = 7960.531200 C = 9158.615297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.122 3.878 7 N -0.728 5.728 8 C 0.554 3.446 9 O -0.582 6.582 10 C -0.284 4.284 11 C -0.042 4.042 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.225 4.225 15 C 0.093 3.907 16 C -0.511 4.511 17 H 0.079 0.921 18 C -0.004 4.004 19 N -0.818 5.818 20 Si 1.118 2.882 21 H -0.254 1.254 22 H -0.276 1.276 23 H -0.267 1.267 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.407 0.593 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.089 0.911 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 -5.063 2.236 18.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.001 4.001 7 N -0.383 5.383 8 C 0.347 3.653 9 O -0.464 6.464 10 C -0.289 4.289 11 C -0.060 4.060 12 C -0.263 4.263 13 C -0.091 4.091 14 C -0.245 4.245 15 C 0.089 3.911 16 C -0.538 4.538 17 H 0.097 0.903 18 C -0.219 4.219 19 N -0.442 5.442 20 Si 0.936 3.064 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.191 1.191 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.244 0.756 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.552 -6.017 1.934 16.787 hybrid contribution -1.553 0.687 0.101 1.701 sum -17.105 -5.330 2.034 18.031 Atomic orbital electron populations 1.21777 0.95357 1.01879 1.01979 1.21552 0.96319 0.96709 1.01962 1.21576 0.94029 0.97126 1.02482 1.21504 0.96310 0.95195 1.02328 1.21722 0.91212 0.98824 1.03614 1.21324 0.95731 0.82561 1.00528 1.45800 1.06060 1.09195 1.77211 1.18499 0.82242 0.89231 0.75344 1.90656 1.56146 1.47478 1.52103 1.19826 0.94604 0.92168 1.22310 1.21168 0.98193 0.92215 0.94448 1.20828 0.95001 0.96364 1.14056 1.21176 0.93919 0.98057 0.95923 1.21206 0.98371 0.92917 1.11991 1.17934 0.92088 0.93212 0.87826 1.21110 0.99844 1.02925 1.29966 0.90317 1.28486 1.02916 0.98075 0.92422 1.70469 1.36813 1.16949 1.19937 0.82983 0.71821 0.74134 0.77496 1.17872 1.20059 1.19117 0.92553 0.92602 0.92464 0.92218 0.92160 0.91537 0.91607 0.92039 0.91923 0.90251 0.90378 0.93688 0.93466 0.75617 0.84573 0.84412 0.85669 0.89256 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.06 16 2 C -0.13 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.11 -1.61 5.21 30.60 0.16 -1.45 16 4 C -0.12 -1.98 5.21 30.60 0.16 -1.82 16 5 C -0.12 -2.26 5.33 30.59 0.16 -2.10 16 6 C 0.12 3.64 5.67 86.38 0.49 4.13 16 7 N -0.73 -25.35 5.51 -466.37 -2.57 -27.92 16 8 C 0.55 26.56 7.73 86.67 0.67 27.23 16 9 O -0.58 -33.01 13.56 -4.06 -0.06 -33.06 16 10 C -0.28 -14.01 5.92 -19.70 -0.12 -14.12 16 11 C -0.04 -1.64 9.53 22.50 0.21 -1.43 16 12 C -0.24 -9.23 10.03 22.41 0.22 -9.00 16 13 C -0.07 -3.06 10.01 22.26 0.22 -2.83 16 14 C -0.23 -11.55 7.87 22.72 0.18 -11.37 16 15 C 0.09 5.21 5.17 -21.11 -0.11 5.10 16 16 C -0.51 -30.16 7.65 23.41 0.18 -29.98 16 17 H 0.08 4.95 5.92 -2.91 -0.02 4.93 16 18 C 0.00 -0.21 5.04 85.37 0.43 0.22 16 19 N -0.82 -46.40 12.57 21.88 0.28 -46.12 16 20 Si 1.12 48.08 29.98 68.60 2.06 50.13 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.41 11.28 6.51 -92.71 -0.60 10.68 16 38 H 0.14 4.05 6.41 -2.91 -0.02 4.03 16 39 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.09 4.79 6.94 -2.91 -0.02 4.77 16 42 H 0.28 16.51 6.55 -92.71 -0.61 15.90 16 Total: -1.00 -69.77 343.47 4.02 -65.75 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.55 Total: 31.24 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.76 Total: -40.02 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.29 Total: -74.04 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.06 Total: -33.06 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.06 Total: 50.13 kcal Total: -69.77 4.02 -65.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058241950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.086 kcal (2) G-P(sol) polarization free energy of solvation -69.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds