Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 C 1.50705 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00147 * 0.02562 * 11 9 8 13 13 C 1.46497 * 119.99886 * 180.02562 * 11 9 8 14 14 C 1.50698 * 109.47350 * 90.00092 * 13 11 9 15 15 H 1.07994 * 119.99932 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00138 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00292 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00129 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47315 * 89.99987 * 18 16 14 20 20 H 1.48501 * 109.47146 * 210.00039 * 18 16 14 21 21 H 1.48505 * 109.46811 * 329.99930 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 32 32 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 33 33 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 34 34 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 35 35 H 1.08996 * 109.47106 * 89.99932 * 12 11 9 36 36 H 1.08994 * 109.47441 * 210.00149 * 12 11 9 37 37 H 1.09000 * 109.46776 * 329.99875 * 12 11 9 38 38 H 1.09000 * 109.47086 * 210.00221 * 13 11 9 39 39 H 1.09004 * 109.47125 * 329.99682 * 13 11 9 40 40 H 0.96996 * 120.00385 * 179.97438 * 17 16 14 41 41 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 42 42 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 6 5.4890 6.8689 -0.0005 10 8 4.7008 7.7907 -0.0004 11 7 6.8141 7.1151 -0.0001 12 6 7.7661 6.0017 0.0004 13 6 7.3023 8.4963 -0.0001 14 6 7.4693 8.9701 1.4207 15 1 7.2356 8.3085 2.2416 16 6 7.9206 10.2484 1.6726 17 7 8.0658 10.6621 2.9125 18 14 8.3243 11.3932 0.2528 19 1 7.1111 12.1625 -0.1231 20 1 9.3983 12.3325 0.6643 21 1 8.7845 10.5945 -0.9116 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 3.0933 5.9619 -0.8899 32 1 3.0934 5.9618 0.8901 33 1 5.3501 4.9342 0.8901 34 1 5.3500 4.9342 -0.8899 35 1 8.0025 5.7254 -1.0271 36 1 8.6784 6.3038 0.5145 37 1 7.3255 5.1472 0.5142 38 1 8.2627 8.5422 -0.5136 39 1 6.5845 9.1355 -0.5143 40 1 8.3836 11.5612 3.0898 41 1 2.9041 3.8846 2.1326 42 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058309384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -31.227440 kcal Electronic energy + Delta-G solvation = -20342.225700 eV Core-core repulsion = 17286.397808 eV Total energy + Delta-G solvation = -3055.827892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75494 -38.93022 -35.32300 -34.79659 -32.70965 -32.26541 -30.98778 -29.34784 -28.07050 -25.97259 -24.88304 -22.94448 -22.79341 -21.69487 -20.42456 -18.35409 -16.95215 -16.67809 -15.91562 -15.89811 -15.33079 -15.03675 -15.00429 -14.13964 -13.94778 -13.85298 -13.48861 -13.21072 -13.12744 -12.95129 -12.38857 -12.29678 -12.14035 -12.00944 -11.83327 -11.61120 -11.51198 -11.31596 -11.07198 -10.94562 -10.81796 -10.69148 -10.50255 -10.13304 -9.53340 -9.02893 -8.98190 -8.57956 -8.51582 -7.67897 -6.07759 -4.06391 1.25916 1.34398 3.29963 3.35947 3.37674 3.38717 3.63576 3.93382 4.40531 4.55199 4.64127 4.83645 4.92692 4.94301 5.09368 5.21455 5.25625 5.27514 5.29823 5.36548 5.45544 5.47352 5.59307 5.61964 5.71902 5.80882 5.86027 5.88536 5.93270 6.00563 6.11943 6.19169 6.33800 6.37513 6.51751 6.66874 6.71713 6.95734 6.96390 7.36070 7.62408 8.27626 8.48406 8.94186 9.01572 9.52655 11.05693 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043030 B = 0.002943 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.547685 B = 9510.716810 C = 9594.812337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.067 4.067 8 C -0.131 4.131 9 C 0.505 3.495 10 O -0.543 6.543 11 N -0.600 5.600 12 C 0.084 3.916 13 C 0.214 3.786 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.113 4.113 23 C -0.116 4.116 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.123 0.877 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 -21.437 -7.818 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.078 4.078 7 C -0.104 4.104 8 C -0.171 4.171 9 C 0.292 3.708 10 O -0.420 6.420 11 N -0.332 5.332 12 C -0.060 4.060 13 C 0.094 3.906 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.131 4.131 23 C -0.135 4.135 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.286 -20.773 -7.710 24.429 hybrid contribution 0.429 0.658 -0.500 0.931 sum -9.857 -20.116 -8.211 23.858 Atomic orbital electron populations 1.21751 0.94861 1.01521 1.02273 1.20520 0.96092 0.92858 1.02642 1.19853 0.99943 0.96199 0.93307 1.20977 1.00326 0.94919 0.97347 1.21069 0.99725 0.94700 0.97755 1.20006 0.98444 0.96262 0.93100 1.20360 0.93880 0.91621 1.04584 1.21647 0.96194 0.95458 1.03779 1.20413 0.82518 0.90782 0.77095 1.90664 1.54812 1.46485 1.50080 1.47856 1.05085 1.08385 1.71849 1.21658 0.94493 0.89487 1.00405 1.19658 0.94384 0.78260 0.98329 1.21332 1.44559 0.99442 0.91292 0.90819 1.24871 0.94982 0.97660 0.95601 1.69899 1.46637 1.18487 1.18657 0.86833 0.78566 0.81264 0.82916 1.19903 1.21076 1.19088 1.21121 0.99346 0.94713 0.97920 1.20998 1.00129 0.94929 0.97396 0.92589 0.92539 0.92553 0.91185 0.91228 0.86409 0.86071 0.90298 0.90056 0.89285 0.89601 0.93707 0.90637 0.92076 0.95300 0.94579 0.92576 0.85883 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.08 -0.61 6.06 -27.89 -0.17 -0.78 16 3 C -0.09 -0.90 5.13 -104.63 -0.54 -1.43 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 5 C -0.11 -1.25 9.70 -39.59 -0.38 -1.64 16 6 C -0.08 -0.94 5.13 -104.62 -0.54 -1.48 16 7 C -0.07 -0.93 4.63 -27.88 -0.13 -1.06 16 8 C -0.13 -1.90 4.23 -27.88 -0.12 -2.02 16 9 C 0.50 10.30 7.67 -10.98 -0.08 10.22 16 10 O -0.54 -13.39 15.56 5.55 0.09 -13.30 16 11 N -0.60 -12.52 2.86 -182.96 -0.52 -13.04 16 12 C 0.08 1.30 10.24 59.85 0.61 1.91 16 13 C 0.21 5.33 4.23 -5.20 -0.02 5.31 16 14 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 15 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C -0.11 -1.29 9.70 -39.58 -0.38 -1.68 16 23 C -0.12 -1.19 9.70 -39.59 -0.38 -1.57 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 32 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 33 H 0.09 1.20 7.40 -51.93 -0.38 0.81 16 34 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 38 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -34.24 349.47 -8.59 -42.83 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -6.93 Total: -1.59 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.59 Total: -10.10 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.25 Total: -40.24 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.24 -8.59 -42.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058309384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.599 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds