Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.52997 * 109.47212 * 270.02160 * 7 6 5 9 9 C 1.50705 * 109.47037 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99969 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00147 * 0.02562 * 11 9 8 13 13 C 1.46497 * 119.99886 * 180.02562 * 11 9 8 14 14 C 1.50698 * 109.47350 * 90.00092 * 13 11 9 15 15 H 1.07994 * 119.99932 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00138 * 180.02562 * 14 13 11 17 17 N 1.31517 * 120.00292 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00129 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47315 * 89.99987 * 18 16 14 20 20 H 1.48501 * 109.47146 * 210.00039 * 18 16 14 21 21 H 1.48505 * 109.46811 * 329.99930 * 18 16 14 22 22 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 23 23 C 1.38230 * 119.99880 * 359.95582 * 22 6 5 24 24 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 29 29 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 30 30 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 31 31 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 32 32 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 33 33 H 1.09002 * 109.47611 * 299.99724 * 8 7 6 34 34 H 1.09001 * 109.47289 * 60.00082 * 8 7 6 35 35 H 1.08996 * 109.47106 * 89.99932 * 12 11 9 36 36 H 1.08994 * 109.47441 * 210.00149 * 12 11 9 37 37 H 1.09000 * 109.46776 * 329.99875 * 12 11 9 38 38 H 1.09000 * 109.47086 * 210.00221 * 13 11 9 39 39 H 1.09004 * 109.47125 * 329.99682 * 13 11 9 40 40 H 0.96996 * 120.00385 * 179.97438 * 17 16 14 41 41 H 1.08008 * 119.99983 * 179.97438 * 22 6 5 42 42 H 1.08007 * 119.99843 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9867 5.4480 0.0001 9 6 5.4890 6.8689 -0.0005 10 8 4.7008 7.7907 -0.0004 11 7 6.8141 7.1151 -0.0001 12 6 7.7661 6.0017 0.0004 13 6 7.3023 8.4963 -0.0001 14 6 7.4693 8.9701 1.4207 15 1 7.2356 8.3085 2.2416 16 6 7.9206 10.2484 1.6726 17 7 8.0658 10.6621 2.9125 18 14 8.3243 11.3932 0.2528 19 1 7.1111 12.1625 -0.1231 20 1 9.3983 12.3325 0.6643 21 1 8.7845 10.5945 -0.9116 22 6 2.7240 3.3755 1.1972 23 6 2.2628 2.0724 1.1971 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.0927 1.5598 -2.1325 30 1 2.9047 3.8844 -2.1324 31 1 3.0933 5.9619 -0.8899 32 1 3.0934 5.9618 0.8901 33 1 5.3501 4.9342 0.8901 34 1 5.3500 4.9342 -0.8899 35 1 8.0025 5.7254 -1.0271 36 1 8.6784 6.3038 0.5145 37 1 7.3255 5.1472 0.5142 38 1 8.2627 8.5422 -0.5136 39 1 6.5845 9.1355 -0.5143 40 1 8.3836 11.5612 3.0898 41 1 2.9041 3.8846 2.1326 42 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058309384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = -51.134281 kcal Electronic energy + Delta-G solvation = -20343.088926 eV Core-core repulsion = 17286.397808 eV Total energy + Delta-G solvation = -3056.691117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89287 -40.20839 -36.72845 -35.98345 -34.71953 -33.38793 -31.77417 -30.85650 -29.39243 -27.37508 -26.09160 -24.24656 -23.58246 -23.03093 -21.26104 -19.92931 -19.16214 -18.02567 -17.10154 -16.95204 -16.78227 -16.34057 -15.95535 -15.84305 -14.90885 -14.70585 -14.56270 -14.40786 -14.20942 -14.07652 -13.96869 -13.64509 -13.54324 -13.33451 -13.15137 -12.80298 -12.65654 -12.44586 -12.29226 -12.28003 -12.03078 -11.85046 -11.75853 -11.62511 -11.58553 -10.84631 -10.67499 -9.77925 -9.39629 -9.36736 -8.35435 -6.40723 0.43948 0.54632 1.31703 1.36087 1.44631 1.80250 2.29952 2.35503 2.87484 2.98841 3.62209 3.90441 3.93555 4.09015 4.13675 4.19917 4.27026 4.37149 4.42271 4.55281 4.62855 4.65144 4.66513 4.68388 4.75359 4.82451 4.93233 4.97143 5.00015 5.09927 5.11972 5.12696 5.25766 5.28012 5.41851 5.44697 5.57412 5.61623 5.77412 5.79296 6.16947 6.22594 6.60400 6.69963 7.20083 7.42208 8.81641 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043030 B = 0.002943 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.547685 B = 9510.716810 C = 9594.812337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.093 4.093 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.091 4.091 7 C -0.059 4.059 8 C -0.114 4.114 9 C 0.494 3.506 10 O -0.597 6.597 11 N -0.610 5.610 12 C 0.077 3.923 13 C 0.221 3.779 14 C -0.537 4.537 15 H 0.027 0.973 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.274 1.274 21 H -0.237 1.237 22 C -0.126 4.126 23 C -0.123 4.123 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.269 0.731 41 H 0.120 0.880 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -23.763 -10.082 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.091 4.091 7 C -0.097 4.097 8 C -0.153 4.153 9 C 0.283 3.717 10 O -0.479 6.479 11 N -0.341 5.341 12 C -0.065 4.065 13 C 0.099 3.901 14 C -0.575 4.575 15 H 0.045 0.955 16 C -0.189 4.189 17 N -0.586 5.586 18 Si 0.773 3.227 19 H -0.202 1.202 20 H -0.199 1.199 21 H -0.160 1.160 22 C -0.144 4.144 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.138 0.862 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.946 -23.162 -9.980 27.111 hybrid contribution 0.273 1.281 0.294 1.343 sum -9.673 -21.880 -9.686 25.810 Atomic orbital electron populations 1.21743 0.94451 1.02344 1.01771 1.20575 0.96334 0.91406 1.03679 1.20196 0.98802 0.97309 0.92971 1.21261 0.99597 0.94538 0.98445 1.21229 0.99619 0.95283 0.97619 1.19822 1.00145 0.95144 0.94027 1.20211 0.93589 0.92923 1.03002 1.21619 0.96390 0.91408 1.05917 1.21477 0.81940 0.92717 0.75530 1.90629 1.56128 1.48682 1.52415 1.48009 1.06378 1.08150 1.71546 1.21973 0.93098 0.88434 1.03007 1.19342 0.94850 0.80648 0.95269 1.21564 1.44334 0.99213 0.92413 0.95492 1.25896 0.94718 0.99579 0.98738 1.70052 1.47930 1.19311 1.21321 0.85679 0.78374 0.78878 0.79791 1.20223 1.19884 1.16036 1.21217 1.00000 0.95494 0.97724 1.21221 0.99812 0.94486 0.98565 0.92939 0.93219 0.91106 0.90377 0.90019 0.84247 0.85055 0.91167 0.92493 0.87795 0.86272 0.90094 0.91657 0.89308 0.93132 0.96383 0.92237 0.86162 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 71.98 0.71 -0.89 16 2 C -0.08 -0.97 6.06 29.85 0.18 -0.79 16 3 C -0.09 -1.56 5.13 -19.87 -0.10 -1.67 16 4 C -0.12 -2.07 9.70 22.27 0.22 -1.85 16 5 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 6 C -0.09 -2.13 5.13 -19.86 -0.10 -2.23 16 7 C -0.06 -1.67 4.63 29.85 0.14 -1.53 16 8 C -0.11 -3.17 4.23 29.85 0.13 -3.04 16 9 C 0.49 20.22 7.67 87.66 0.67 20.89 16 10 O -0.60 -30.52 15.56 -3.04 -0.05 -30.57 16 11 N -0.61 -25.10 2.86 -851.14 -2.43 -27.53 16 12 C 0.08 2.20 10.24 127.77 1.31 3.51 16 13 C 0.22 11.00 4.23 85.63 0.36 11.36 16 14 C -0.54 -32.23 9.94 25.60 0.25 -31.98 16 15 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 16 C 0.01 0.51 5.47 84.65 0.46 0.97 16 17 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 18 Si 0.95 45.08 27.47 68.60 1.88 46.96 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 22 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 23 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 28 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 32 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 33 H 0.10 2.61 7.40 -2.39 -0.02 2.60 16 34 H 0.12 2.56 8.11 -2.39 -0.02 2.54 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 37 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 38 H 0.05 2.29 7.13 -2.39 -0.02 2.27 16 39 H 0.02 0.96 6.85 -2.39 -0.02 0.95 16 40 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 41 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -77.91 349.47 5.50 -72.41 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.92 Total: 13.21 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.88 Total: -14.09 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -2.13 Total: -87.92 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.05 Total: -30.57 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -77.91 5.50 -72.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058309384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.272 kcal (2) G-P(sol) polarization free energy of solvation -77.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds