Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46688 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00350 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99602 * 179.97438 * 5 4 3 8 8 C 1.46504 * 120.00240 * 4.74832 * 7 5 4 9 9 C 1.50697 * 109.46906 * 269.99669 * 8 7 5 10 10 H 1.08004 * 120.00315 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00353 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99420 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00378 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46889 * 59.99994 * 13 11 9 15 15 H 1.48501 * 109.47074 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46838 * 300.00052 * 13 11 9 17 17 C 1.39921 * 120.00051 * 184.73635 * 7 5 4 18 18 C 1.38880 * 120.06637 * 67.90141 * 17 7 5 19 19 C 1.38112 * 119.92591 * 180.29734 * 18 17 7 20 20 C 1.38279 * 120.07227 * 359.46855 * 19 18 17 21 21 C 1.50699 * 119.93129 * 180.27773 * 20 19 18 22 22 C 1.38280 * 120.14278 * 0.50982 * 20 19 18 23 23 C 1.38114 * 120.06964 * 359.76678 * 22 20 19 24 24 H 1.09000 * 109.47082 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46996 * 299.99271 * 1 2 3 26 26 H 1.08999 * 109.47271 * 60.00083 * 1 2 3 27 27 H 1.08998 * 109.47103 * 239.99963 * 2 1 3 28 28 H 1.08999 * 109.47271 * 119.99917 * 2 1 3 29 29 H 1.08993 * 109.46777 * 60.00223 * 3 2 1 30 30 H 1.08999 * 109.46980 * 300.00095 * 3 2 1 31 31 H 1.09006 * 109.46987 * 60.00263 * 4 3 2 32 32 H 1.08999 * 109.47271 * 299.99917 * 4 3 2 33 33 H 1.08998 * 109.47136 * 29.98982 * 8 7 5 34 34 H 1.08997 * 109.47384 * 149.99417 * 8 7 5 35 35 H 0.97011 * 119.99942 * 179.97438 * 12 11 9 36 36 H 1.07999 * 120.03317 * 0.02829 * 18 17 7 37 37 H 1.08000 * 119.95987 * 179.70093 * 19 18 17 38 38 H 1.08997 * 109.47146 * 270.23432 * 21 20 19 39 39 H 1.09004 * 109.47265 * 30.23327 * 21 20 19 40 40 H 1.08997 * 109.47241 * 150.23012 * 21 20 19 41 41 H 1.08000 * 119.96877 * 179.74213 * 22 20 19 42 42 H 1.08001 * 120.04195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7853 -0.0004 7 7 5.3974 3.1097 0.0009 8 6 6.3487 2.0004 -0.1025 9 6 6.6953 1.5056 1.2781 10 1 6.2516 1.9711 2.1459 11 6 7.5787 0.4585 1.4337 12 7 8.1194 -0.1080 0.3771 13 14 8.0088 -0.1544 3.1451 14 1 6.7756 -0.6211 3.8281 15 1 8.9731 -1.2789 3.0403 16 1 8.6202 0.9500 3.9272 17 6 5.8644 4.4249 0.1004 18 6 5.6864 5.1393 1.2780 19 6 6.1431 6.4394 1.3709 20 6 6.7868 7.0261 0.2969 21 6 7.2895 8.4428 0.4039 22 6 6.9661 6.3173 -0.8769 23 6 6.5067 5.0188 -0.9782 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9338 0.9286 -0.8892 32 1 3.9330 0.9289 0.8908 33 1 5.9006 1.1898 -0.6770 34 1 7.2540 2.3435 -0.6033 35 1 8.7413 -0.8445 0.4865 36 1 5.1875 4.6801 2.1186 37 1 6.0007 6.9971 2.2847 38 1 6.5077 9.1309 0.0825 39 1 7.5582 8.6558 1.4386 40 1 8.1661 8.5663 -0.2319 41 1 7.4656 6.7797 -1.7154 42 1 6.6466 4.4658 -1.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060851947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = -37.606263 kcal Electronic energy + Delta-G solvation = -21211.751677 eV Core-core repulsion = 18155.647178 eV Total energy + Delta-G solvation = -3056.104499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87407 -38.21233 -35.36934 -34.85045 -32.84631 -31.53561 -30.52755 -29.96626 -27.48410 -26.11233 -24.15827 -23.09278 -22.10190 -21.34650 -20.51091 -18.61070 -16.79947 -16.59802 -15.85191 -15.45908 -15.00573 -14.97149 -14.43078 -14.01698 -13.86109 -13.52925 -13.38683 -13.03409 -12.91657 -12.62844 -12.25791 -12.03306 -11.96535 -11.67384 -11.50768 -11.27690 -11.03457 -10.97450 -10.86504 -10.74425 -10.69339 -10.66602 -10.24777 -10.20441 -9.85101 -9.13330 -8.59325 -8.48579 -8.42164 -7.56949 -6.21446 -4.28770 1.74278 1.85857 3.22561 3.27552 3.28417 3.36101 3.83725 4.18321 4.32100 5.09907 5.12271 5.17067 5.18888 5.21537 5.28899 5.40321 5.55258 5.59434 5.68856 5.72436 5.83538 5.88041 5.92525 6.01887 6.08507 6.09602 6.14456 6.17831 6.28062 6.36785 6.45523 6.59943 6.64453 6.72114 6.86464 6.95337 6.98991 7.15662 7.27689 7.66474 7.76028 8.00350 8.22271 8.74438 8.98338 9.38681 10.85462 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.006927 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.225269 B = 4041.305413 C = 6142.186356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.133 4.133 5 C 0.520 3.480 6 O -0.563 6.563 7 N -0.564 5.564 8 C 0.240 3.760 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.173 3.827 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.122 4.122 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.266 0.734 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 6.526 -1.405 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.173 4.173 5 C 0.311 3.689 6 O -0.443 6.443 7 N -0.292 5.292 8 C 0.121 3.879 9 C -0.576 4.576 10 H 0.079 0.921 11 C -0.136 4.136 12 N -0.529 5.529 13 Si 0.724 3.276 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.081 3.919 18 C -0.123 4.123 19 C -0.131 4.131 20 C -0.107 4.107 21 C -0.164 4.164 22 C -0.132 4.132 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.820 6.799 -1.478 9.071 hybrid contribution 0.580 -0.625 0.963 1.286 sum -5.240 6.175 -0.515 8.115 Atomic orbital electron populations 1.21757 0.96237 1.01078 1.01673 1.21550 0.95438 0.97133 1.02226 1.21362 0.93870 0.95964 1.02784 1.21647 0.96143 0.94023 1.05480 1.20752 0.81448 0.91683 0.75065 1.90616 1.55385 1.46939 1.51315 1.46017 1.06799 1.05626 1.70718 1.19551 0.87549 0.82856 0.97909 1.21395 1.26967 1.16831 0.92395 0.92118 1.24916 0.95428 0.96110 0.97189 1.69910 1.29947 1.24094 1.28955 0.86569 0.78443 0.78430 0.84156 1.20006 1.21070 1.20102 1.17584 0.96172 0.85272 0.92823 1.21207 0.99731 0.94543 0.96851 1.20797 0.99325 0.94747 0.98268 1.19782 1.00184 0.96382 0.94321 1.20708 1.00590 0.92919 1.02175 1.20760 1.01006 0.94110 0.97286 1.21187 0.99980 0.95015 0.97959 0.93100 0.92883 0.92934 0.92010 0.91832 0.91734 0.91879 0.89163 0.87673 0.93877 0.94434 0.92400 0.86351 0.86407 0.91718 0.91928 0.91918 0.86329 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.13 -1.65 5.93 -26.73 -0.16 -1.81 16 3 C -0.10 -1.59 4.50 -26.73 -0.12 -1.71 16 4 C -0.13 -2.41 4.36 -27.88 -0.12 -2.54 16 5 C 0.52 11.05 7.53 -10.99 -0.08 10.97 16 6 O -0.56 -12.97 15.74 5.55 0.09 -12.88 16 7 N -0.56 -12.37 2.51 -114.74 -0.29 -12.66 16 8 C 0.24 5.73 4.88 -5.19 -0.03 5.70 16 9 C -0.54 -13.93 9.16 -34.44 -0.32 -14.25 16 10 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 11 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 13 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 C 0.17 3.62 4.75 -83.69 -0.40 3.22 16 18 C -0.10 -2.04 9.55 -39.39 -0.38 -2.42 16 19 C -0.11 -1.87 9.69 -39.61 -0.38 -2.25 16 20 C -0.11 -1.63 5.88 -104.59 -0.62 -2.24 16 21 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 22 C -0.11 -1.80 9.69 -39.61 -0.38 -2.19 16 23 C -0.12 -2.27 9.69 -39.39 -0.38 -2.65 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.09 1.57 7.26 -51.93 -0.38 1.19 16 32 H 0.11 2.00 7.91 -51.93 -0.41 1.59 16 33 H 0.04 1.03 6.47 -51.93 -0.34 0.70 16 34 H 0.04 0.96 7.86 -51.93 -0.41 0.55 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -29.08 352.47 -8.89 -37.97 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.99 Total: 3.08 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.73 Total: -12.67 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.45 Total: -36.28 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.08 -8.89 -37.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060851947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.366 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds