Wall clock time and date at job start Mon Mar 30 2020 03:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46688 * 179.97438 * 4 3 2 6 6 O 1.21286 * 120.00350 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99602 * 179.97438 * 5 4 3 8 8 C 1.46504 * 120.00240 * 4.74832 * 7 5 4 9 9 C 1.50697 * 109.46906 * 269.99669 * 8 7 5 10 10 H 1.08004 * 120.00315 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00353 * 179.97438 * 9 8 7 12 12 N 1.31514 * 119.99420 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00378 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46889 * 59.99994 * 13 11 9 15 15 H 1.48501 * 109.47074 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46838 * 300.00052 * 13 11 9 17 17 C 1.39921 * 120.00051 * 184.73635 * 7 5 4 18 18 C 1.38880 * 120.06637 * 67.90141 * 17 7 5 19 19 C 1.38112 * 119.92591 * 180.29734 * 18 17 7 20 20 C 1.38279 * 120.07227 * 359.46855 * 19 18 17 21 21 C 1.50699 * 119.93129 * 180.27773 * 20 19 18 22 22 C 1.38280 * 120.14278 * 0.50982 * 20 19 18 23 23 C 1.38114 * 120.06964 * 359.76678 * 22 20 19 24 24 H 1.09000 * 109.47082 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46996 * 299.99271 * 1 2 3 26 26 H 1.08999 * 109.47271 * 60.00083 * 1 2 3 27 27 H 1.08998 * 109.47103 * 239.99963 * 2 1 3 28 28 H 1.08999 * 109.47271 * 119.99917 * 2 1 3 29 29 H 1.08993 * 109.46777 * 60.00223 * 3 2 1 30 30 H 1.08999 * 109.46980 * 300.00095 * 3 2 1 31 31 H 1.09006 * 109.46987 * 60.00263 * 4 3 2 32 32 H 1.08999 * 109.47271 * 299.99917 * 4 3 2 33 33 H 1.08998 * 109.47136 * 29.98982 * 8 7 5 34 34 H 1.08997 * 109.47384 * 149.99417 * 8 7 5 35 35 H 0.97011 * 119.99942 * 179.97438 * 12 11 9 36 36 H 1.07999 * 120.03317 * 0.02829 * 18 17 7 37 37 H 1.08000 * 119.95987 * 179.70093 * 19 18 17 38 38 H 1.08997 * 109.47146 * 270.23432 * 21 20 19 39 39 H 1.09004 * 109.47265 * 30.23327 * 21 20 19 40 40 H 1.08997 * 109.47241 * 150.23012 * 21 20 19 41 41 H 1.08000 * 119.96877 * 179.74213 * 22 20 19 42 42 H 1.08001 * 120.04195 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7853 -0.0004 7 7 5.3974 3.1097 0.0009 8 6 6.3487 2.0004 -0.1025 9 6 6.6953 1.5056 1.2781 10 1 6.2516 1.9711 2.1459 11 6 7.5787 0.4585 1.4337 12 7 8.1194 -0.1080 0.3771 13 14 8.0088 -0.1544 3.1451 14 1 6.7756 -0.6211 3.8281 15 1 8.9731 -1.2789 3.0403 16 1 8.6202 0.9500 3.9272 17 6 5.8644 4.4249 0.1004 18 6 5.6864 5.1393 1.2780 19 6 6.1431 6.4394 1.3709 20 6 6.7868 7.0261 0.2969 21 6 7.2895 8.4428 0.4039 22 6 6.9661 6.3173 -0.8769 23 6 6.5067 5.0188 -0.9782 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9338 0.9286 -0.8892 32 1 3.9330 0.9289 0.8908 33 1 5.9006 1.1898 -0.6770 34 1 7.2540 2.3435 -0.6033 35 1 8.7413 -0.8445 0.4865 36 1 5.1875 4.6801 2.1186 37 1 6.0007 6.9971 2.2847 38 1 6.5077 9.1309 0.0825 39 1 7.5582 8.6558 1.4386 40 1 8.1661 8.5663 -0.2319 41 1 7.4656 6.7797 -1.7154 42 1 6.6466 4.4658 -1.8953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060851947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:23 Heat of formation + Delta-G solvation = -50.842675 kcal Electronic energy + Delta-G solvation = -21212.325651 eV Core-core repulsion = 18155.647178 eV Total energy + Delta-G solvation = -3056.678472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46347 -39.65845 -36.94409 -36.22354 -34.73174 -32.94507 -31.89656 -31.21173 -29.33331 -27.41218 -25.53059 -24.84490 -23.55154 -22.60165 -21.77084 -20.18995 -18.72767 -18.27536 -17.57558 -16.95261 -16.40795 -16.29726 -16.22254 -15.40610 -15.24714 -14.62860 -14.45809 -14.41751 -14.38637 -14.30551 -13.70764 -13.56929 -13.22179 -13.06060 -12.96554 -12.77754 -12.65197 -12.48108 -12.18792 -12.12601 -12.07517 -11.98307 -11.83080 -11.74645 -11.44976 -10.85637 -10.60394 -10.01640 -9.87200 -9.12733 -8.23668 -6.38612 0.35082 0.47264 1.40226 1.40966 1.48735 1.66102 2.20333 2.40345 2.80505 3.06562 3.73338 3.93973 4.00561 4.04763 4.05775 4.07730 4.35951 4.46052 4.47765 4.51394 4.56909 4.71663 4.75062 4.82991 4.90744 4.93101 4.95868 5.00210 5.09669 5.13817 5.15493 5.20172 5.28292 5.39122 5.39547 5.50728 5.55534 5.66527 5.67241 5.81310 6.00114 6.16543 6.46481 6.72711 7.24285 7.35693 8.81937 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.006927 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.225269 B = 4041.305413 C = 6142.186356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.127 4.127 5 C 0.513 3.487 6 O -0.585 6.585 7 N -0.565 5.565 8 C 0.257 3.743 9 C -0.546 4.546 10 H 0.050 0.950 11 C 0.025 3.975 12 N -0.918 5.918 13 Si 0.955 3.045 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.276 1.276 17 C 0.128 3.872 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.099 4.099 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.138 4.138 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.017 0.983 35 H 0.269 0.731 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.153 0.847 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 7.611 -1.014 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.167 4.167 5 C 0.304 3.696 6 O -0.466 6.466 7 N -0.292 5.292 8 C 0.137 3.863 9 C -0.585 4.585 10 H 0.068 0.932 11 C -0.176 4.176 12 N -0.557 5.557 13 Si 0.780 3.220 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.202 1.202 17 C 0.037 3.963 18 C -0.148 4.148 19 C -0.133 4.133 20 C -0.099 4.099 21 C -0.161 4.161 22 C -0.128 4.128 23 C -0.158 4.158 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.171 0.829 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.597 7.895 -1.087 9.738 hybrid contribution 0.549 -0.836 0.812 1.288 sum -5.048 7.059 -0.275 8.682 Atomic orbital electron populations 1.21738 0.94541 1.02275 1.01919 1.21533 0.96900 0.95044 1.02533 1.21311 0.91838 0.97829 1.02124 1.21661 0.97938 0.91939 1.05120 1.21287 0.81146 0.92692 0.74456 1.90579 1.55640 1.47899 1.52478 1.45959 1.06709 1.05926 1.70596 1.19184 0.87088 0.83237 0.96783 1.21535 1.27136 1.17013 0.92797 0.93193 1.25616 0.95201 0.96154 1.00587 1.69996 1.30426 1.24534 1.30718 0.85645 0.78445 0.77909 0.79960 1.19215 1.20298 1.20165 1.17978 0.98619 0.85244 0.94410 1.21267 1.01114 0.96218 0.96171 1.21156 0.98529 0.93574 0.99993 1.20319 0.98157 0.98261 0.93157 1.20795 1.01639 0.89952 1.03709 1.21191 0.99985 0.92903 0.98765 1.21362 1.00452 0.96517 0.97466 0.91422 0.92843 0.92544 0.91366 0.91881 0.92696 0.92176 0.88558 0.88705 0.94317 0.96509 0.92144 0.88027 0.83623 0.90018 0.90527 0.90176 0.82905 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.91 71.98 0.71 -2.39 16 2 C -0.12 -3.12 5.93 30.60 0.18 -2.93 16 3 C -0.09 -2.94 4.50 30.60 0.14 -2.80 16 4 C -0.13 -4.76 4.36 29.85 0.13 -4.63 16 5 C 0.51 22.73 7.53 87.66 0.66 23.39 16 6 O -0.58 -27.95 15.74 -3.05 -0.05 -27.99 16 7 N -0.56 -25.96 2.51 -635.30 -1.59 -27.55 16 8 C 0.26 12.79 4.88 85.63 0.42 13.21 16 9 C -0.55 -29.12 9.16 25.60 0.23 -28.89 16 10 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 11 C 0.03 1.34 5.46 84.65 0.46 1.80 16 12 N -0.92 -50.71 13.29 21.45 0.28 -50.43 16 13 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 C 0.13 5.56 4.75 38.16 0.18 5.74 16 18 C -0.13 -5.19 9.55 22.39 0.21 -4.97 16 19 C -0.11 -3.65 9.69 22.25 0.22 -3.44 16 20 C -0.10 -2.77 5.88 -19.85 -0.12 -2.89 16 21 C -0.10 -1.92 10.01 71.24 0.71 -1.21 16 22 C -0.11 -3.32 9.69 22.25 0.22 -3.11 16 23 C -0.14 -5.24 9.69 22.39 0.22 -5.02 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 30 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.10 3.45 7.26 -2.38 -0.02 3.43 16 32 H 0.09 3.74 7.91 -2.39 -0.02 3.73 16 33 H 0.04 1.94 6.47 -2.39 -0.02 1.92 16 34 H 0.02 0.90 7.86 -2.39 -0.02 0.88 16 35 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 36 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 40 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 42 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -63.66 352.47 6.22 -57.45 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.97 Total: 22.58 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 4.58 Total: -18.15 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -1.31 Total: -77.98 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -63.66 6.22 -57.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060851947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.604 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds