Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38269 * 119.96970 * 2 1 4 4 C 1.38267 * 120.11278 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.97426 * 180.02562 * 4 3 2 6 6 C 1.38144 * 120.05265 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94373 * 0.02562 * 6 4 3 8 8 O 1.35904 * 120.05332 * 180.02562 * 7 6 4 9 9 C 1.42898 * 116.99850 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47042 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.47014 * 65.00136 * 10 9 8 12 12 C 1.36936 * 119.99761 * 270.26946 * 11 10 9 13 13 H 1.08001 * 119.99317 * 140.60596 * 12 11 10 14 14 C 1.38807 * 120.00359 * 320.60673 * 12 11 10 15 15 N 1.31621 * 119.99896 * 157.05121 * 14 12 11 16 16 Si 1.86794 * 120.00322 * 337.05443 * 14 12 11 17 17 H 1.48498 * 109.47504 * 91.93019 * 16 14 12 18 18 H 1.48496 * 109.47530 * 211.93492 * 16 14 12 19 19 H 1.48506 * 109.46661 * 331.93518 * 16 14 12 20 20 C 1.46500 * 119.99916 * 90.00237 * 11 10 9 21 21 C 1.53000 * 117.49878 * 184.01549 * 20 11 10 22 22 C 1.52995 * 117.50017 * 115.39020 * 20 11 10 23 23 C 1.38142 * 119.97460 * 180.23575 * 2 1 3 24 24 H 1.08999 * 109.46767 * 89.99664 * 1 2 3 25 25 H 1.08998 * 109.47052 * 209.99794 * 1 2 3 26 26 H 1.08996 * 109.47048 * 329.99621 * 1 2 3 27 27 H 1.08002 * 119.94324 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46858 * 269.97619 * 5 4 3 29 29 H 1.08998 * 109.47301 * 29.97487 * 5 4 3 30 30 H 1.09000 * 109.47349 * 149.97689 * 5 4 3 31 31 H 1.08004 * 120.02882 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.47021 * 59.99880 * 9 8 7 33 33 H 1.08998 * 109.47436 * 299.99411 * 9 8 7 34 34 H 1.08997 * 109.47434 * 304.99896 * 10 9 8 35 35 H 1.09000 * 109.47170 * 185.00189 * 10 9 8 36 36 H 0.97003 * 120.00007 * 179.97438 * 15 14 12 37 37 H 1.08995 * 115.55316 * 329.71666 * 20 11 10 38 38 H 1.09007 * 117.49520 * 359.97438 * 21 20 11 39 39 H 1.08992 * 117.50150 * 145.01728 * 21 20 11 40 40 H 1.09004 * 117.50387 * 214.97279 * 22 20 11 41 41 H 1.09000 * 117.50323 * 359.97438 * 22 20 11 42 42 H 1.07999 * 120.02492 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.3301 2.5085 0.0011 6 6 4.2752 0.0073 0.0016 7 6 3.5845 -1.1959 0.0016 8 8 4.2658 -2.3718 0.0032 9 6 3.4893 -3.5714 0.0037 10 6 4.4231 -4.7834 0.0048 11 7 5.1830 -4.8131 1.2570 12 6 6.3871 -4.1667 1.3426 13 1 6.6505 -3.6328 2.2437 14 6 7.2692 -4.1976 0.2713 15 7 8.1818 -3.2578 0.1429 16 14 7.1611 -5.5727 -0.9883 17 1 6.2749 -5.1538 -2.1038 18 1 8.5171 -5.8673 -1.5173 19 1 6.6053 -6.7904 -0.3452 20 6 4.6519 -5.5295 2.4193 21 6 5.4459 -5.4453 3.7244 22 6 5.4350 -6.7456 2.9180 23 6 2.1973 -1.1966 -0.0049 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6563 2.1323 -0.0004 28 1 4.5116 2.8237 -1.0264 29 1 3.7384 3.2665 0.5145 30 1 5.2825 2.3810 0.5156 31 1 5.3553 0.0104 0.0016 32 1 2.8612 -3.5980 -0.8868 33 1 2.8599 -3.5965 0.8932 34 1 5.1121 -4.7120 -0.8367 35 1 3.8340 -5.6961 -0.0844 36 1 8.7985 -3.2796 -0.6056 37 1 3.5650 -5.5662 2.4926 38 1 6.3637 -4.8572 3.7181 39 1 4.8815 -5.4265 4.6566 40 1 4.8633 -7.5822 3.3199 41 1 6.3451 -7.0129 2.3812 42 1 1.6572 -2.1319 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = 32.597639 kcal Electronic energy + Delta-G solvation = -21511.539813 eV Core-core repulsion = 18458.479584 eV Total energy + Delta-G solvation = -3053.060229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72737 -37.68527 -36.81037 -33.62194 -33.31595 -31.60844 -30.40041 -28.27965 -27.01785 -26.47148 -24.21509 -22.63901 -21.46969 -21.24705 -20.22284 -19.54704 -17.10283 -16.55789 -15.84844 -15.64164 -15.45918 -15.13166 -14.68161 -13.72997 -13.70021 -13.56982 -13.21438 -13.11558 -12.72520 -12.57950 -12.42001 -12.38549 -12.15038 -11.88108 -11.45666 -11.37951 -11.15797 -10.84285 -10.77453 -10.50138 -10.42938 -10.21668 -9.97171 -9.72742 -9.43003 -9.41454 -8.42629 -8.32067 -7.63590 -6.70781 -5.94260 -3.36544 1.63550 1.84849 3.30736 3.47199 3.51966 3.88863 4.07315 4.54703 4.74647 4.86229 4.93872 5.01957 5.30642 5.36477 5.45001 5.49432 5.59888 5.60738 5.67796 5.73881 5.76226 5.78270 5.85717 5.87678 5.91504 5.96736 6.01964 6.06342 6.13271 6.26906 6.42768 6.45943 6.48963 6.62155 6.75153 6.85135 6.91709 6.92674 7.12723 7.20886 8.06490 8.16364 8.46122 8.99955 9.74962 10.11736 11.20935 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.005540 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.622466 B = 5052.614927 C = 5661.786242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.051 4.051 3 C -0.175 4.175 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.158 4.158 7 C 0.153 3.847 8 O -0.266 6.266 9 C 0.045 3.955 10 C 0.134 3.866 11 N -0.567 5.567 12 C -0.257 4.257 13 H 0.080 0.920 14 C 0.047 3.953 15 N -0.891 5.891 16 Si 0.866 3.134 17 H -0.285 1.285 18 H -0.301 1.301 19 H -0.268 1.268 20 C 0.117 3.883 21 C -0.187 4.187 22 C -0.223 4.223 23 C -0.226 4.226 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.293 4.857 -0.411 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.194 4.194 4 C -0.048 4.048 5 C -0.169 4.169 6 C -0.176 4.176 7 C 0.105 3.895 8 O -0.177 6.177 9 C -0.033 4.033 10 C 0.008 3.992 11 N -0.285 5.285 12 C -0.385 4.385 13 H 0.097 0.903 14 C -0.155 4.155 15 N -0.532 5.532 16 Si 0.696 3.304 17 H -0.213 1.213 18 H -0.229 1.229 19 H -0.193 1.193 20 C 0.008 3.992 21 C -0.225 4.225 22 C -0.264 4.264 23 C -0.245 4.245 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.907 4.892 -0.517 13.813 hybrid contribution -0.154 -0.911 -0.759 1.195 sum -13.062 3.982 -1.276 13.715 Atomic orbital electron populations 1.20759 0.91650 1.02396 1.01964 1.19575 0.95414 0.92673 0.97465 1.20621 0.93394 0.97008 1.08352 1.19621 0.93475 0.94522 0.97202 1.20772 1.00130 0.93774 1.02189 1.20405 1.00785 0.89290 1.07156 1.19261 0.90230 0.87527 0.92479 1.86527 1.33833 1.11051 1.86332 1.23671 0.95121 0.85449 0.99055 1.21418 0.94077 0.92706 0.91046 1.43609 1.20183 1.57577 1.07161 1.18558 0.91491 1.25090 1.03346 0.90279 1.25399 0.95666 0.96713 0.97681 1.69874 1.21177 1.31211 1.30902 0.87139 0.75987 0.85434 0.81830 1.21288 1.22868 1.19271 1.21172 0.93384 0.95581 0.89022 1.23045 1.04001 1.01333 0.94101 1.23373 1.04717 0.91841 1.06435 1.21076 0.93271 0.98422 1.11721 0.91427 0.91814 0.91746 0.86750 0.91260 0.91789 0.91212 0.84906 0.93758 0.92924 0.91293 0.91777 0.92841 0.89297 0.87831 0.90569 0.90891 0.89258 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.82 16 2 C -0.05 -0.74 5.88 -104.64 -0.62 -1.35 16 3 C -0.18 -2.50 9.35 -39.56 -0.37 -2.87 16 4 C -0.05 -0.74 5.88 -104.65 -0.62 -1.36 16 5 C -0.11 -1.36 10.01 36.00 0.36 -1.00 16 6 C -0.16 -2.95 9.64 -39.43 -0.38 -3.33 16 7 C 0.15 2.99 6.69 -39.22 -0.26 2.73 16 8 O -0.27 -5.97 9.60 -19.44 -0.19 -6.15 16 9 C 0.05 0.86 5.08 37.16 0.19 1.04 16 10 C 0.13 2.81 5.00 -4.04 -0.02 2.79 16 11 N -0.57 -13.20 2.35 -165.67 -0.39 -13.59 16 12 C -0.26 -7.03 8.42 -15.06 -0.13 -7.16 16 13 H 0.08 2.39 6.87 -52.49 -0.36 2.03 16 14 C 0.05 1.33 5.28 -17.43 -0.09 1.24 16 15 N -0.89 -27.05 13.97 55.49 0.78 -26.28 16 16 Si 0.87 21.96 25.32 -169.99 -4.30 17.66 16 17 H -0.28 -7.02 6.52 56.52 0.37 -6.66 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 20 C 0.12 2.34 6.57 -67.93 -0.45 1.89 16 21 C -0.19 -3.59 9.80 -26.73 -0.26 -3.86 16 22 C -0.22 -4.24 10.35 -26.73 -0.28 -4.51 16 23 C -0.23 -3.74 8.69 -39.44 -0.34 -4.08 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 26 H 0.06 0.59 8.08 -51.93 -0.42 0.18 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.13 2.64 8.06 -52.48 -0.42 2.22 16 32 H 0.04 0.72 7.65 -51.93 -0.40 0.32 16 33 H 0.05 0.93 7.67 -51.93 -0.40 0.53 16 34 H 0.07 1.62 3.46 -51.93 -0.18 1.44 16 35 H 0.06 1.14 8.07 -51.93 -0.42 0.73 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.10 2.27 6.45 -51.93 -0.33 1.93 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 42 H 0.12 1.82 6.30 -52.49 -0.33 1.49 16 LS Contribution 340.69 15.07 5.13 5.13 Total: -1.00 -30.98 340.69 -8.52 -39.50 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.65 Total: 4.37 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.90 Total: -20.65 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.38 Total: -39.86 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.19 Total: -6.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.30 Total: 17.66 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.98 -8.52 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.099 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds