Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38269 * 119.96970 * 2 1 4 4 C 1.38267 * 120.11278 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.97426 * 180.02562 * 4 3 2 6 6 C 1.38144 * 120.05265 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94373 * 0.02562 * 6 4 3 8 8 O 1.35904 * 120.05332 * 180.02562 * 7 6 4 9 9 C 1.42898 * 116.99850 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47042 * 179.97438 * 9 8 7 11 11 N 1.46501 * 109.47014 * 65.00136 * 10 9 8 12 12 C 1.36936 * 119.99761 * 270.26946 * 11 10 9 13 13 H 1.08001 * 119.99317 * 140.60596 * 12 11 10 14 14 C 1.38807 * 120.00359 * 320.60673 * 12 11 10 15 15 N 1.31621 * 119.99896 * 157.05121 * 14 12 11 16 16 Si 1.86794 * 120.00322 * 337.05443 * 14 12 11 17 17 H 1.48498 * 109.47504 * 91.93019 * 16 14 12 18 18 H 1.48496 * 109.47530 * 211.93492 * 16 14 12 19 19 H 1.48506 * 109.46661 * 331.93518 * 16 14 12 20 20 C 1.46500 * 119.99916 * 90.00237 * 11 10 9 21 21 C 1.53000 * 117.49878 * 184.01549 * 20 11 10 22 22 C 1.52995 * 117.50017 * 115.39020 * 20 11 10 23 23 C 1.38142 * 119.97460 * 180.23575 * 2 1 3 24 24 H 1.08999 * 109.46767 * 89.99664 * 1 2 3 25 25 H 1.08998 * 109.47052 * 209.99794 * 1 2 3 26 26 H 1.08996 * 109.47048 * 329.99621 * 1 2 3 27 27 H 1.08002 * 119.94324 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46858 * 269.97619 * 5 4 3 29 29 H 1.08998 * 109.47301 * 29.97487 * 5 4 3 30 30 H 1.09000 * 109.47349 * 149.97689 * 5 4 3 31 31 H 1.08004 * 120.02882 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.47021 * 59.99880 * 9 8 7 33 33 H 1.08998 * 109.47436 * 299.99411 * 9 8 7 34 34 H 1.08997 * 109.47434 * 304.99896 * 10 9 8 35 35 H 1.09000 * 109.47170 * 185.00189 * 10 9 8 36 36 H 0.97003 * 120.00007 * 179.97438 * 15 14 12 37 37 H 1.08995 * 115.55316 * 329.71666 * 20 11 10 38 38 H 1.09007 * 117.49520 * 359.97438 * 21 20 11 39 39 H 1.08992 * 117.50150 * 145.01728 * 21 20 11 40 40 H 1.09004 * 117.50387 * 214.97279 * 22 20 11 41 41 H 1.09000 * 117.50323 * 359.97438 * 22 20 11 42 42 H 1.07999 * 120.02492 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2013 0.0005 5 6 4.3301 2.5085 0.0011 6 6 4.2752 0.0073 0.0016 7 6 3.5845 -1.1959 0.0016 8 8 4.2658 -2.3718 0.0032 9 6 3.4893 -3.5714 0.0037 10 6 4.4231 -4.7834 0.0048 11 7 5.1830 -4.8131 1.2570 12 6 6.3871 -4.1667 1.3426 13 1 6.6505 -3.6328 2.2437 14 6 7.2692 -4.1976 0.2713 15 7 8.1818 -3.2578 0.1429 16 14 7.1611 -5.5727 -0.9883 17 1 6.2749 -5.1538 -2.1038 18 1 8.5171 -5.8673 -1.5173 19 1 6.6053 -6.7904 -0.3452 20 6 4.6519 -5.5295 2.4193 21 6 5.4459 -5.4453 3.7244 22 6 5.4350 -6.7456 2.9180 23 6 2.1973 -1.1966 -0.0049 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6563 2.1323 -0.0004 28 1 4.5116 2.8237 -1.0264 29 1 3.7384 3.2665 0.5145 30 1 5.2825 2.3810 0.5156 31 1 5.3553 0.0104 0.0016 32 1 2.8612 -3.5980 -0.8868 33 1 2.8599 -3.5965 0.8932 34 1 5.1121 -4.7120 -0.8367 35 1 3.8340 -5.6961 -0.0844 36 1 8.7985 -3.2796 -0.6056 37 1 3.5650 -5.5662 2.4926 38 1 6.3637 -4.8572 3.7181 39 1 4.8815 -5.4265 4.6566 40 1 4.8633 -7.5822 3.3199 41 1 6.3451 -7.0129 2.3812 42 1 1.6572 -2.1319 -0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063516125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = 15.062886 kcal Electronic energy + Delta-G solvation = -21512.300177 eV Core-core repulsion = 18458.479584 eV Total energy + Delta-G solvation = -3053.820593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06571 -39.21339 -38.33446 -35.35914 -34.41656 -33.58144 -31.76082 -29.91299 -28.04250 -27.67364 -26.15727 -24.18401 -22.99815 -22.56768 -21.53940 -21.23621 -18.59586 -18.37787 -17.47941 -17.17795 -16.80555 -16.74906 -16.26736 -15.45803 -14.80645 -14.79265 -14.72947 -14.43186 -14.08454 -14.00490 -13.92755 -13.81003 -13.40879 -13.28338 -12.79506 -12.66310 -12.60083 -12.51475 -12.24512 -12.15154 -11.89746 -11.82549 -11.57635 -11.42307 -11.22868 -10.96256 -10.55060 -9.53542 -8.97517 -8.60403 -8.14400 -5.52504 0.39662 0.57931 1.26909 1.37810 1.48507 2.43474 2.49630 2.81954 2.99125 3.22229 3.37315 3.85806 3.91089 4.16505 4.18132 4.25590 4.27887 4.37511 4.38797 4.41763 4.45825 4.51803 4.52346 4.64760 4.71356 4.80589 4.87563 4.89949 4.93521 4.96653 5.01025 5.05324 5.11798 5.31511 5.35705 5.48446 5.54150 5.62280 5.70932 5.98255 6.03305 6.24698 6.74848 7.03294 7.67066 8.05789 9.05451 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.005540 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.622466 B = 5052.614927 C = 5661.786242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.047 4.047 3 C -0.172 4.172 4 C -0.047 4.047 5 C -0.111 4.111 6 C -0.196 4.196 7 C 0.121 3.879 8 O -0.315 6.315 9 C 0.047 3.953 10 C 0.126 3.874 11 N -0.581 5.581 12 C -0.230 4.230 13 H 0.033 0.967 14 C -0.014 4.014 15 N -0.946 5.946 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.312 1.312 19 H -0.254 1.254 20 C 0.103 3.897 21 C -0.191 4.191 22 C -0.207 4.207 23 C -0.230 4.230 24 H 0.084 0.916 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.151 0.849 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.258 0.742 37 H 0.129 0.871 38 H 0.063 0.937 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 4.382 -0.466 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.048 4.048 3 C -0.190 4.190 4 C -0.048 4.048 5 C -0.168 4.168 6 C -0.215 4.215 7 C 0.074 3.926 8 O -0.228 6.228 9 C -0.030 4.030 10 C 0.001 3.999 11 N -0.300 5.300 12 C -0.360 4.360 13 H 0.051 0.949 14 C -0.210 4.210 15 N -0.590 5.590 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.241 1.241 19 H -0.178 1.178 20 C -0.004 4.004 21 C -0.229 4.229 22 C -0.248 4.248 23 C -0.249 4.249 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.169 0.831 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.067 0.933 37 H 0.147 0.853 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.077 0.923 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.379 4.391 -0.562 17.934 hybrid contribution 1.124 -0.648 -0.633 1.443 sum -16.255 3.744 -1.195 16.723 Atomic orbital electron populations 1.20843 0.88322 1.03898 1.03419 1.20115 0.97750 0.91823 0.95065 1.21075 0.92717 0.98638 1.06566 1.19986 0.94595 0.94394 0.95788 1.20845 0.99785 0.92839 1.03298 1.20445 0.99492 0.91157 1.10439 1.19544 0.91783 0.86622 0.94609 1.86443 1.36220 1.12724 1.87405 1.23640 0.94578 0.83731 1.01023 1.21573 0.94099 0.95509 0.88758 1.43684 1.19208 1.58089 1.09059 1.18269 0.93037 1.23488 1.01243 0.94930 1.25981 0.95917 0.98773 1.00309 1.70026 1.23170 1.33500 1.32297 0.86061 0.75364 0.82670 0.79796 1.20164 1.24130 1.17762 1.21551 0.95331 0.95846 0.87670 1.23014 1.02853 1.01343 0.95706 1.23340 1.03506 0.92592 1.05342 1.21265 0.91775 1.00204 1.11622 0.89793 0.90935 0.89732 0.83145 0.89926 0.88953 0.92299 0.88402 0.90889 0.91523 0.94114 0.87703 0.93338 0.85348 0.91863 0.87074 0.86804 0.92268 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.01 71.24 0.71 -1.10 16 2 C -0.05 -1.23 5.88 -19.88 -0.12 -1.35 16 3 C -0.17 -4.41 9.35 22.28 0.21 -4.20 16 4 C -0.05 -1.45 5.88 -19.88 -0.12 -1.57 16 5 C -0.11 -2.60 10.01 71.23 0.71 -1.89 16 6 C -0.20 -7.84 9.64 22.37 0.22 -7.63 16 7 C 0.12 4.88 6.69 22.51 0.15 5.03 16 8 O -0.31 -14.69 9.60 -92.47 -0.89 -15.58 16 9 C 0.05 1.75 5.08 71.98 0.37 2.11 16 10 C 0.13 5.11 5.00 86.38 0.43 5.54 16 11 N -0.58 -26.99 2.35 -678.06 -1.60 -28.59 16 12 C -0.23 -13.27 8.42 84.03 0.71 -12.56 16 13 H 0.03 2.15 6.87 -2.91 -0.02 2.13 16 14 C -0.01 -0.82 5.28 84.86 0.45 -0.37 16 15 N -0.95 -61.45 13.97 21.65 0.30 -61.15 16 16 Si 0.93 47.16 25.32 68.60 1.74 48.90 16 17 H -0.27 -13.25 6.52 99.48 0.65 -12.60 16 18 H -0.31 -16.20 7.11 99.48 0.71 -15.50 16 19 H -0.25 -12.06 7.11 99.48 0.71 -11.36 16 20 C 0.10 3.91 6.57 44.99 0.30 4.21 16 21 C -0.19 -7.22 9.80 30.60 0.30 -6.92 16 22 C -0.21 -7.42 10.35 30.59 0.32 -7.10 16 23 C -0.23 -7.28 8.69 22.36 0.19 -7.09 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 26 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 27 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 30 H 0.06 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.07 2.22 7.65 -2.39 -0.02 2.20 16 33 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 34 H 0.04 1.90 3.46 -2.39 -0.01 1.89 16 35 H 0.11 3.36 8.07 -2.39 -0.02 3.34 16 36 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 37 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 38 H 0.06 2.91 6.45 -2.38 -0.02 2.90 16 39 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.14 3.76 6.30 -2.91 -0.02 3.75 16 Total: -1.00 -74.26 340.69 5.31 -68.94 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.93 Total: 22.35 kcal Atomic # 6 Polarization: -39.70 SS G_CDS: 4.83 Total: -34.87 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -1.29 Total: -89.74 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.89 Total: -15.58 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.74 Total: 48.90 kcal Total: -74.26 5.31 -68.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.006 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds