Wall clock time and date at job start Mon Mar 30 2020 02:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46857 * 2 1 4 4 C 1.38232 * 119.99848 * 90.00100 * 3 2 1 5 5 C 1.38236 * 119.99740 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00102 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47006 * 90.00025 * 7 6 5 9 9 C 1.50703 * 109.47006 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99866 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00101 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99874 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47391 * 325.00213 * 12 11 9 14 14 C 1.53000 * 109.46840 * 85.00543 * 12 11 9 15 15 C 1.50699 * 109.47060 * 205.00285 * 12 11 9 16 16 H 1.07999 * 120.00019 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00129 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99723 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99900 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47147 * 90.00197 * 19 17 15 21 21 H 1.48499 * 109.46797 * 209.99607 * 19 17 15 22 22 H 1.48500 * 109.47032 * 329.99738 * 19 17 15 23 23 C 1.38228 * 119.99843 * 0.25230 * 6 5 4 24 24 C 1.38230 * 119.99967 * 270.01646 * 3 2 1 25 25 H 1.08995 * 109.46815 * 300.00184 * 1 2 3 26 26 H 1.09003 * 109.46951 * 60.00310 * 1 2 3 27 27 H 1.08996 * 109.47114 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47109 * 240.00103 * 2 1 3 29 29 H 1.09003 * 109.46951 * 119.99690 * 2 1 3 30 30 H 1.07997 * 120.00154 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.99710 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46880 * 330.00049 * 7 6 5 33 33 H 1.08997 * 109.47148 * 210.00494 * 7 6 5 34 34 H 1.09002 * 109.47281 * 60.00270 * 8 7 6 35 35 H 1.09003 * 109.47162 * 299.99621 * 8 7 6 36 36 H 0.97002 * 119.99716 * 0.02562 * 11 9 8 37 37 H 1.08992 * 109.47399 * 59.99666 * 14 12 11 38 38 H 1.09004 * 109.46724 * 180.02562 * 14 12 11 39 39 H 1.09001 * 109.47194 * 299.99493 * 14 12 11 40 40 H 0.97003 * 119.99231 * 179.97438 * 18 17 15 41 41 H 1.08005 * 120.00045 * 179.72338 * 23 6 5 42 42 H 1.08007 * 120.00323 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1971 6 6 2.9543 4.0273 0.0000 7 6 3.4565 5.4481 0.0000 8 6 4.9865 5.4482 -0.0001 9 6 5.4888 6.8690 -0.0007 10 8 4.7006 7.7908 -0.0016 11 7 6.8139 7.1154 -0.0003 12 6 7.3021 8.4967 -0.0015 13 1 6.6298 9.1192 -0.5919 14 6 7.3529 9.0208 1.4350 15 6 8.6838 8.5405 -0.6014 16 1 9.1514 7.6306 -0.9476 17 6 9.3512 9.7423 -0.7084 18 7 8.7816 10.8504 -0.2873 19 14 11.0642 9.7965 -1.4514 20 1 10.9613 10.0071 -2.9177 21 1 11.8321 10.9128 -0.8437 22 1 11.7609 8.5128 -1.1832 23 6 2.7184 3.3776 -1.1971 24 6 2.2624 2.0726 -1.1971 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0831 1.5632 2.1324 31 1 2.9043 3.8846 2.1325 32 1 3.0932 5.9619 0.8900 33 1 3.0931 5.9620 -0.8899 34 1 5.3499 4.9344 -0.8901 35 1 5.3499 4.9344 0.8900 36 1 7.4442 6.3781 0.0000 37 1 8.0252 8.3983 2.0253 38 1 7.7158 10.0487 1.4341 39 1 6.3535 8.9891 1.8689 40 1 9.2513 11.6958 -0.3622 41 1 2.8941 3.8882 -2.1324 42 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:45 Heat of formation + Delta-G solvation = -63.538124 kcal Electronic energy + Delta-G solvation = -20114.681513 eV Core-core repulsion = 17057.452525 eV Total energy + Delta-G solvation = -3057.228988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79359 -40.16668 -36.83645 -35.92874 -34.31549 -33.36061 -31.77041 -31.08401 -29.40155 -27.35154 -25.94253 -23.70444 -23.58085 -22.56349 -21.28231 -21.01456 -18.89614 -17.63793 -17.15026 -16.84951 -16.74944 -16.09620 -15.97906 -15.83246 -14.88136 -14.63266 -14.47158 -14.42784 -14.26120 -14.00350 -13.91604 -13.58134 -13.21551 -13.01566 -12.87437 -12.78257 -12.59238 -12.34417 -12.28681 -12.24720 -12.12592 -11.85067 -11.62463 -11.58488 -11.11546 -10.72797 -10.56865 -9.77719 -9.73030 -9.36306 -8.17946 -6.35654 0.44407 0.54879 1.44600 1.45186 1.56094 1.85757 2.35854 2.64656 2.90693 3.12227 3.78916 3.91599 3.97354 4.11285 4.15998 4.20840 4.39757 4.40158 4.55193 4.64445 4.67411 4.68951 4.75098 4.78418 4.92048 4.97205 5.09705 5.10030 5.11865 5.13847 5.26735 5.28298 5.41654 5.43803 5.57604 5.62002 5.69654 5.77539 5.79535 5.91214 6.10122 6.17336 6.72738 6.99263 7.32360 7.59220 8.88375 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041497 B = 0.002697 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.585961 B =10379.104767 C =10663.392160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.122 4.122 5 C -0.123 4.123 6 C -0.092 4.092 7 C -0.058 4.058 8 C -0.118 4.118 9 C 0.495 3.505 10 O -0.604 6.604 11 N -0.708 5.708 12 C 0.268 3.732 13 H -0.004 1.004 14 C -0.133 4.133 15 C -0.546 4.546 16 H 0.074 0.926 17 C 0.011 3.989 18 N -0.918 5.918 19 Si 0.974 3.026 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.124 4.124 24 C -0.123 4.123 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.405 0.595 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.011 0.989 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.616 -22.924 1.049 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.140 4.140 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.283 3.717 10 O -0.486 6.486 11 N -0.357 5.357 12 C 0.164 3.836 13 H 0.014 0.986 14 C -0.192 4.192 15 C -0.585 4.585 16 H 0.092 0.908 17 C -0.188 4.188 18 N -0.557 5.557 19 Si 0.799 3.201 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.142 4.142 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.241 0.759 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.117 -22.076 1.069 25.205 hybrid contribution 1.042 0.623 -0.317 1.255 sum -11.074 -21.452 0.752 24.154 Atomic orbital electron populations 1.21741 0.94403 1.02346 1.01791 1.20579 0.96374 0.91437 1.03637 1.20197 0.98858 0.97292 0.93009 1.21245 0.99733 0.94571 0.98472 1.21237 0.99737 0.95380 0.97734 1.19852 1.00076 0.95326 0.93988 1.20193 0.93477 0.92761 1.03128 1.21612 0.96543 0.91504 1.06109 1.21474 0.82391 0.92603 0.75275 1.90628 1.56469 1.48630 1.52869 1.46328 1.06673 1.10055 1.72634 1.18335 0.93336 0.78708 0.93185 0.98615 1.21891 0.97057 1.02739 0.97521 1.21556 1.00703 0.94773 1.41419 0.90828 1.25846 1.02492 0.94976 0.95525 1.70065 1.39545 0.99117 1.46931 0.85315 0.78492 0.78218 0.78120 1.20353 1.20943 1.18319 1.21237 0.99800 0.95391 0.97752 1.21243 0.99792 0.94535 0.98490 0.93027 0.93074 0.91120 0.90270 0.90221 0.84523 0.85432 0.91591 0.91756 0.87221 0.86989 0.75948 0.94034 0.91565 0.96959 0.92561 0.85577 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.90 71.98 0.71 -0.87 16 2 C -0.08 -0.98 6.06 29.85 0.18 -0.80 16 3 C -0.09 -1.58 5.13 -19.87 -0.10 -1.68 16 4 C -0.12 -2.17 9.70 22.27 0.22 -1.96 16 5 C -0.12 -2.54 9.70 22.27 0.22 -2.32 16 6 C -0.09 -2.11 5.13 -19.87 -0.10 -2.22 16 7 C -0.06 -1.56 4.63 29.85 0.14 -1.42 16 8 C -0.12 -3.20 5.68 29.85 0.17 -3.03 16 9 C 0.49 19.73 7.79 87.66 0.68 20.41 16 10 O -0.60 -29.90 15.64 -3.02 -0.05 -29.94 16 11 N -0.71 -29.65 5.07 -446.09 -2.26 -31.91 16 12 C 0.27 14.16 2.56 44.25 0.11 14.27 16 13 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 14 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 15 C -0.55 -29.22 8.73 25.60 0.22 -29.00 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C 0.01 0.62 5.30 84.65 0.45 1.07 16 18 N -0.92 -53.30 11.32 21.45 0.24 -53.06 16 19 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 C -0.12 -2.60 9.70 22.27 0.22 -2.38 16 24 C -0.12 -2.21 9.70 22.27 0.22 -1.99 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 30 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 33 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.41 14.12 8.54 -92.71 -0.79 13.32 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 42 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -68.14 351.60 4.15 -63.99 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.20 Total: 24.79 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.00 Total: -18.13 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.02 Total: -84.97 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.05 Total: -29.94 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -68.14 4.15 -63.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.450 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds