Wall clock time and date at job start Mon Mar 30 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47018 * 2 1 4 4 C 1.38238 * 119.99692 * 269.72127 * 3 2 1 5 5 C 1.38233 * 120.00190 * 179.74547 * 4 3 2 6 6 C 1.38241 * 119.99675 * 0.55087 * 5 4 3 7 7 C 1.50700 * 119.99881 * 179.72822 * 6 5 4 8 8 H 1.08999 * 109.47247 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.47000 * 299.97419 * 7 6 5 10 10 C 1.50695 * 109.47494 * 59.97322 * 7 6 5 11 11 O 1.21297 * 119.99781 * 342.99449 * 10 7 6 12 12 N 1.34781 * 120.00067 * 162.98422 * 10 7 6 13 13 C 1.37100 * 119.99614 * 5.57916 * 12 10 7 14 14 H 1.07994 * 120.00593 * 10.31540 * 13 12 10 15 15 C 1.38953 * 119.99438 * 190.32522 * 13 12 10 16 16 N 1.31414 * 120.00184 * 20.03415 * 15 13 12 17 17 Si 1.86802 * 119.99582 * 200.03895 * 15 13 12 18 18 H 1.48497 * 109.47324 * 59.99843 * 17 15 13 19 19 H 1.48504 * 109.46929 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47114 * 299.99609 * 17 15 13 21 21 C 1.46496 * 119.99971 * 185.57274 * 12 10 7 22 22 C 1.53004 * 109.47314 * 83.93807 * 21 12 10 23 23 C 1.38234 * 120.00217 * 359.70205 * 6 5 4 24 24 C 1.38229 * 120.00341 * 89.99767 * 3 2 1 25 25 H 1.09006 * 109.46940 * 60.00486 * 1 2 3 26 26 H 1.08993 * 109.47457 * 300.00439 * 1 2 3 27 27 H 1.08998 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46940 * 119.99514 * 2 1 3 29 29 H 1.08993 * 109.47457 * 239.99561 * 2 1 3 30 30 H 1.08003 * 119.99808 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.00297 * 180.27667 * 5 4 3 32 32 H 1.09000 * 109.46957 * 185.00627 * 9 7 6 33 33 H 1.08998 * 109.46935 * 305.00742 * 9 7 6 34 34 H 1.09003 * 109.46920 * 65.00311 * 9 7 6 35 35 H 0.97003 * 119.99490 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47135 * 203.93752 * 21 12 10 37 37 H 1.09003 * 109.47084 * 323.93781 * 21 12 10 38 38 H 1.09001 * 109.46828 * 293.30424 * 22 21 12 39 39 H 1.09002 * 109.46661 * 53.30349 * 22 21 12 40 40 H 1.08993 * 109.47174 * 173.30131 * 22 21 12 41 41 H 1.07991 * 120.00438 * 179.97438 * 23 6 5 42 42 H 1.08002 * 120.00307 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7239 3.3755 -1.1974 6 6 2.9546 4.0272 -0.0002 7 6 3.4573 5.4479 -0.0003 8 1 3.5783 5.7906 1.0273 9 6 4.8054 5.5118 -0.7213 10 6 2.4652 6.3318 -0.7111 11 8 1.6215 5.8401 -1.4306 12 7 2.5151 7.6686 -0.5471 13 6 3.5361 8.2332 0.1729 14 1 4.3855 7.6343 0.4664 15 6 3.4779 9.5761 0.5253 16 7 2.3236 10.2042 0.5318 17 14 5.0405 10.4883 0.9896 18 1 5.9894 10.4578 -0.1522 19 1 4.7107 11.8979 1.3211 20 1 5.6634 9.8348 2.1686 21 6 1.4786 8.5184 -1.1384 22 6 0.2690 8.5730 -0.2032 23 6 2.7238 3.3758 1.1970 24 6 2.2626 2.0725 1.1971 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.0920 1.5599 -2.1325 31 1 2.9039 3.8846 -2.1327 32 1 5.2110 6.5206 -0.6443 33 1 5.4971 4.8059 -0.2615 34 1 4.6682 5.2544 -1.7716 35 1 2.2831 11.1418 0.7774 36 1 1.8722 9.5246 -1.2825 37 1 1.1756 8.1055 -2.1007 38 1 -0.1962 7.5885 -0.1530 39 1 0.5935 8.8728 0.7933 40 1 -0.4520 9.2965 -0.5835 41 1 2.9044 3.8847 2.1322 42 1 2.0822 1.5637 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067991217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:13 Heat of formation + Delta-G solvation = -17.057222 kcal Electronic energy + Delta-G solvation = -21655.117195 eV Core-core repulsion = 18599.903769 eV Total energy + Delta-G solvation = -3055.213425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.57905 -38.25670 -35.26030 -34.36009 -32.28004 -31.49145 -30.47026 -29.57532 -28.01292 -24.98791 -24.26037 -23.07153 -22.27236 -21.42345 -20.06506 -18.91459 -17.02455 -16.21738 -15.60002 -15.06026 -14.79270 -14.32685 -14.14563 -13.85598 -13.47926 -13.41463 -13.12453 -12.83482 -12.81487 -12.36465 -12.35496 -12.00999 -11.57357 -11.41371 -11.23037 -11.19235 -11.12764 -11.07365 -10.79617 -10.64956 -10.42492 -10.33305 -10.26493 -10.12692 -9.69562 -8.89129 -8.51453 -8.22869 -7.98787 -7.75536 -6.36551 -3.87380 1.78338 1.89929 3.09495 3.19023 3.20130 3.90836 4.05506 4.20788 4.85407 4.94758 5.03391 5.05283 5.34224 5.39441 5.41615 5.45790 5.64761 5.78869 5.84945 5.89809 5.92956 6.02122 6.08580 6.16678 6.22896 6.38565 6.46187 6.50944 6.57617 6.65297 6.69172 6.81043 6.87613 6.90017 6.99745 7.07068 7.24933 7.35260 7.44112 7.50889 7.75538 7.80009 8.44802 9.07483 9.57301 9.97599 10.61065 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.004666 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.009836 B = 5999.905728 C = 6446.902404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.096 4.096 4 C -0.127 4.127 5 C -0.071 4.071 6 C -0.055 4.055 7 C -0.059 4.059 8 H 0.093 0.907 9 C -0.137 4.137 10 C 0.460 3.540 11 O -0.603 6.603 12 N -0.439 5.439 13 C -0.336 4.336 14 H 0.104 0.896 15 C 0.035 3.965 16 N -0.859 5.859 17 Si 0.916 3.084 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.134 3.866 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.127 4.127 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.268 0.732 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.022 0.978 39 H 0.081 0.919 40 H 0.034 0.966 41 H 0.117 0.883 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 -11.475 0.657 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.096 4.096 4 C -0.145 4.145 5 C -0.089 4.089 6 C -0.055 4.055 7 C -0.081 4.081 8 H 0.111 0.889 9 C -0.194 4.194 10 C 0.248 3.752 11 O -0.490 6.490 12 N -0.156 5.156 13 C -0.464 4.464 14 H 0.121 0.879 15 C -0.170 4.170 16 N -0.497 5.497 17 Si 0.743 3.257 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.011 3.989 22 C -0.193 4.193 23 C -0.133 4.133 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.135 0.865 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.315 -11.455 0.349 11.535 hybrid contribution 0.655 0.764 0.428 1.094 sum 1.971 -10.690 0.777 10.898 Atomic orbital electron populations 1.21748 0.95089 1.01102 1.02443 1.20471 0.95961 0.93157 1.02130 1.19746 1.00512 0.95985 0.93398 1.20931 1.01367 0.95186 0.96992 1.20966 0.96586 0.93208 0.98187 1.19610 0.98136 0.94693 0.93074 1.20042 0.95504 0.90877 1.01659 0.88925 1.21763 0.94935 1.02839 0.99885 1.19802 0.86835 0.82734 0.85840 1.90525 1.41041 1.74236 1.43216 1.43784 1.23046 1.03838 1.44947 1.19778 0.98982 0.94407 1.33192 0.87895 1.25219 0.97581 0.97465 0.96734 1.70161 1.22986 1.11557 1.45017 0.86165 0.81907 0.78646 0.78993 1.19911 1.20922 1.19864 1.21220 0.88243 0.95902 0.93527 1.21903 0.96626 0.97796 1.02993 1.21018 1.00058 0.94748 0.97503 1.20816 1.01609 0.95038 0.97017 0.92492 0.92600 0.92864 0.91558 0.91509 0.86872 0.86034 0.90600 0.92918 0.92868 0.92163 0.88491 0.94728 0.95876 0.90065 0.94699 0.86457 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.89 37.16 0.37 -1.20 16 2 C -0.08 -0.90 6.07 -27.88 -0.17 -1.07 16 3 C -0.10 -1.40 5.13 -104.62 -0.54 -1.94 16 4 C -0.13 -2.01 9.70 -39.58 -0.38 -2.40 16 5 C -0.07 -1.31 7.89 -39.58 -0.31 -1.62 16 6 C -0.05 -1.03 4.57 -104.62 -0.48 -1.51 16 7 C -0.06 -1.20 2.05 -92.92 -0.19 -1.39 16 8 H 0.09 1.86 7.10 -51.93 -0.37 1.49 16 9 C -0.14 -2.40 8.63 37.16 0.32 -2.08 16 10 C 0.46 11.14 6.76 -10.99 -0.07 11.07 16 11 O -0.60 -15.95 14.28 5.54 0.08 -15.88 16 12 N -0.44 -11.01 2.64 -114.81 -0.30 -11.31 16 13 C -0.34 -8.23 8.63 -14.93 -0.13 -8.36 16 14 H 0.10 2.35 4.84 -52.49 -0.25 2.10 16 15 C 0.03 0.84 5.01 -17.47 -0.09 0.75 16 16 N -0.86 -21.46 8.45 55.50 0.47 -20.99 16 17 Si 0.92 18.85 29.60 -169.99 -5.03 13.82 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C 0.13 3.33 5.29 -4.04 -0.02 3.31 16 22 C -0.14 -3.21 9.53 37.16 0.35 -2.85 16 23 C -0.12 -1.94 9.67 -39.58 -0.38 -2.33 16 24 C -0.13 -1.90 9.70 -39.58 -0.38 -2.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.12 2.33 7.15 -52.49 -0.38 1.96 16 32 H 0.08 1.37 6.05 -51.93 -0.31 1.06 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.93 7.57 -51.93 -0.39 0.54 16 35 H 0.27 6.39 8.31 -40.82 -0.34 6.06 16 36 H 0.10 2.48 5.82 -51.93 -0.30 2.17 16 37 H 0.03 0.86 7.54 -51.93 -0.39 0.47 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.07 6.58 -51.93 -0.34 1.73 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.12 1.81 7.95 -52.49 -0.42 1.39 16 42 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -27.85 334.86 -8.36 -36.21 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.51 Total: 7.02 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.11 Total: -13.92 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.17 Total: -32.30 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.88 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.85 -8.36 -36.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.154 kcal (2) G-P(sol) polarization free energy of solvation -27.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds