Wall clock time and date at job start Mon Mar 30 2020 02:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.47018 * 2 1 4 4 C 1.38238 * 119.99692 * 269.72127 * 3 2 1 5 5 C 1.38233 * 120.00190 * 179.74547 * 4 3 2 6 6 C 1.38241 * 119.99675 * 0.55087 * 5 4 3 7 7 C 1.50700 * 119.99881 * 179.72822 * 6 5 4 8 8 H 1.08999 * 109.47247 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.47000 * 299.97419 * 7 6 5 10 10 C 1.50695 * 109.47494 * 59.97322 * 7 6 5 11 11 O 1.21297 * 119.99781 * 342.99449 * 10 7 6 12 12 N 1.34781 * 120.00067 * 162.98422 * 10 7 6 13 13 C 1.37100 * 119.99614 * 5.57916 * 12 10 7 14 14 H 1.07994 * 120.00593 * 10.31540 * 13 12 10 15 15 C 1.38953 * 119.99438 * 190.32522 * 13 12 10 16 16 N 1.31414 * 120.00184 * 20.03415 * 15 13 12 17 17 Si 1.86802 * 119.99582 * 200.03895 * 15 13 12 18 18 H 1.48497 * 109.47324 * 59.99843 * 17 15 13 19 19 H 1.48504 * 109.46929 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47114 * 299.99609 * 17 15 13 21 21 C 1.46496 * 119.99971 * 185.57274 * 12 10 7 22 22 C 1.53004 * 109.47314 * 83.93807 * 21 12 10 23 23 C 1.38234 * 120.00217 * 359.70205 * 6 5 4 24 24 C 1.38229 * 120.00341 * 89.99767 * 3 2 1 25 25 H 1.09006 * 109.46940 * 60.00486 * 1 2 3 26 26 H 1.08993 * 109.47457 * 300.00439 * 1 2 3 27 27 H 1.08998 * 109.47172 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46940 * 119.99514 * 2 1 3 29 29 H 1.08993 * 109.47457 * 239.99561 * 2 1 3 30 30 H 1.08003 * 119.99808 * 0.02562 * 4 3 2 31 31 H 1.07997 * 120.00297 * 180.27667 * 5 4 3 32 32 H 1.09000 * 109.46957 * 185.00627 * 9 7 6 33 33 H 1.08998 * 109.46935 * 305.00742 * 9 7 6 34 34 H 1.09003 * 109.46920 * 65.00311 * 9 7 6 35 35 H 0.97003 * 119.99490 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47135 * 203.93752 * 21 12 10 37 37 H 1.09003 * 109.47084 * 323.93781 * 21 12 10 38 38 H 1.09001 * 109.46828 * 293.30424 * 22 21 12 39 39 H 1.09002 * 109.46661 * 53.30349 * 22 21 12 40 40 H 1.08993 * 109.47174 * 173.30131 * 22 21 12 41 41 H 1.07991 * 120.00438 * 179.97438 * 23 6 5 42 42 H 1.08002 * 120.00307 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7239 3.3755 -1.1974 6 6 2.9546 4.0272 -0.0002 7 6 3.4573 5.4479 -0.0003 8 1 3.5783 5.7906 1.0273 9 6 4.8054 5.5118 -0.7213 10 6 2.4652 6.3318 -0.7111 11 8 1.6215 5.8401 -1.4306 12 7 2.5151 7.6686 -0.5471 13 6 3.5361 8.2332 0.1729 14 1 4.3855 7.6343 0.4664 15 6 3.4779 9.5761 0.5253 16 7 2.3236 10.2042 0.5318 17 14 5.0405 10.4883 0.9896 18 1 5.9894 10.4578 -0.1522 19 1 4.7107 11.8979 1.3211 20 1 5.6634 9.8348 2.1686 21 6 1.4786 8.5184 -1.1384 22 6 0.2690 8.5730 -0.2032 23 6 2.7238 3.3758 1.1970 24 6 2.2626 2.0725 1.1971 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 2.0920 1.5599 -2.1325 31 1 2.9039 3.8846 -2.1327 32 1 5.2110 6.5206 -0.6443 33 1 5.4971 4.8059 -0.2615 34 1 4.6682 5.2544 -1.7716 35 1 2.2831 11.1418 0.7774 36 1 1.8722 9.5246 -1.2825 37 1 1.1756 8.1055 -2.1007 38 1 -0.1962 7.5885 -0.1530 39 1 0.5935 8.8728 0.7933 40 1 -0.4520 9.2965 -0.5835 41 1 2.9044 3.8847 2.1322 42 1 2.0822 1.5637 2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067991217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:12 Heat of formation + Delta-G solvation = -29.255127 kcal Electronic energy + Delta-G solvation = -21655.646136 eV Core-core repulsion = 18599.903769 eV Total energy + Delta-G solvation = -3055.742366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12890 -39.81999 -37.03377 -35.80125 -33.64170 -33.34788 -31.73750 -31.38103 -29.27080 -26.83686 -25.69093 -24.55899 -23.54990 -22.93454 -21.44835 -20.71050 -18.79183 -17.95255 -16.94283 -16.45491 -16.29463 -15.97681 -15.74809 -15.49570 -14.84133 -14.68356 -14.49303 -14.33305 -14.08280 -13.99598 -13.77215 -13.61897 -13.17363 -12.95390 -12.81895 -12.63983 -12.55863 -12.40051 -12.33011 -12.08086 -11.95286 -11.90866 -11.65368 -11.57190 -11.54093 -10.81038 -10.18530 -9.70858 -9.66693 -9.30243 -8.22773 -5.79923 0.50950 0.62386 1.45664 1.51921 1.59648 2.07596 2.32779 2.84115 3.13698 3.20262 3.83342 3.96219 4.03351 4.20367 4.22855 4.37022 4.45508 4.49811 4.56381 4.60505 4.68466 4.75170 4.78645 4.82733 4.91055 4.97145 5.02666 5.10003 5.10712 5.11554 5.20515 5.25446 5.32138 5.41881 5.43375 5.52639 5.63461 5.77993 5.79575 5.88377 5.89844 6.23244 6.53633 7.17893 7.67105 8.07687 8.75627 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.004666 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.009836 B = 5999.905728 C = 6446.902404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.092 4.092 4 C -0.133 4.133 5 C -0.091 4.091 6 C -0.081 4.081 7 C -0.051 4.051 8 H 0.090 0.910 9 C -0.128 4.128 10 C 0.447 3.553 11 O -0.634 6.634 12 N -0.450 5.450 13 C -0.356 4.356 14 H 0.116 0.884 15 C -0.005 4.005 16 N -0.882 5.882 17 Si 0.984 3.016 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.134 3.866 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.126 4.126 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.269 0.731 36 H 0.090 0.910 37 H 0.024 0.976 38 H 0.010 0.990 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.128 0.872 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -13.072 1.810 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.092 4.092 4 C -0.151 4.151 5 C -0.109 4.109 6 C -0.081 4.081 7 C -0.072 4.072 8 H 0.108 0.892 9 C -0.186 4.186 10 C 0.237 3.763 11 O -0.523 6.523 12 N -0.168 5.168 13 C -0.483 4.483 14 H 0.134 0.866 15 C -0.207 4.207 16 N -0.520 5.520 17 Si 0.808 3.192 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.189 1.189 21 C 0.011 3.989 22 C -0.176 4.176 23 C -0.143 4.143 24 C -0.143 4.143 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.149 0.851 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.029 0.971 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.200 -13.058 1.507 13.327 hybrid contribution 0.301 1.212 0.053 1.250 sum 2.501 -11.846 1.560 12.207 Atomic orbital electron populations 1.21745 0.94697 1.02397 1.01487 1.20550 0.96117 0.90931 1.03862 1.20184 0.98776 0.97605 0.92606 1.21181 1.00874 0.94382 0.98661 1.20918 0.98209 0.94475 0.97307 1.19615 1.00177 0.94186 0.94153 1.19962 0.95436 0.90991 1.00848 0.89191 1.21701 0.94168 1.03140 0.99542 1.20580 0.87316 0.82820 0.85581 1.90485 1.42458 1.74770 1.44537 1.44024 1.23294 1.04368 1.45064 1.20167 0.99315 0.95119 1.33678 0.86613 1.26043 1.00337 0.97849 0.96468 1.70251 1.24647 1.11740 1.45409 0.85116 0.78148 0.77030 0.78859 1.19615 1.21095 1.18895 1.21159 0.88815 0.95492 0.93413 1.21720 0.96526 0.97518 1.01856 1.21229 1.00192 0.95786 0.97138 1.21188 1.00281 0.94321 0.98549 0.93812 0.93232 0.90491 0.89540 0.90142 0.85086 0.88095 0.91247 0.90175 0.93465 0.92066 0.89241 0.95720 0.97067 0.91703 0.92662 0.85442 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.89 71.98 0.71 -2.01 16 2 C -0.08 -1.47 6.07 29.85 0.18 -1.29 16 3 C -0.09 -2.46 5.13 -19.87 -0.10 -2.57 16 4 C -0.13 -4.11 9.70 22.27 0.22 -3.90 16 5 C -0.09 -3.39 7.89 22.27 0.18 -3.21 16 6 C -0.08 -3.06 4.57 -19.86 -0.09 -3.15 16 7 C -0.05 -2.08 2.05 -12.29 -0.03 -2.11 16 8 H 0.09 3.64 7.10 -2.39 -0.02 3.62 16 9 C -0.13 -4.49 8.63 71.98 0.62 -3.87 16 10 C 0.45 22.32 6.76 87.65 0.59 22.91 16 11 O -0.63 -34.79 14.28 -3.08 -0.04 -34.84 16 12 N -0.45 -23.15 2.64 -635.53 -1.68 -24.82 16 13 C -0.36 -17.53 8.63 84.04 0.73 -16.81 16 14 H 0.12 5.26 4.84 -2.91 -0.01 5.25 16 15 C 0.00 -0.23 5.01 84.93 0.43 0.20 16 16 N -0.88 -44.29 8.45 21.66 0.18 -44.10 16 17 Si 0.98 38.14 29.60 68.60 2.03 40.17 16 18 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.29 -11.06 7.11 99.48 0.71 -10.36 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 21 C 0.13 6.87 5.29 86.38 0.46 7.33 16 22 C -0.12 -5.72 9.53 71.98 0.69 -5.04 16 23 C -0.13 -4.10 9.67 22.27 0.22 -3.89 16 24 C -0.13 -3.47 9.70 22.27 0.22 -3.25 16 25 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.34 8.09 -2.38 -0.02 1.32 16 29 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 30 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.10 4.07 7.15 -2.91 -0.02 4.05 16 32 H 0.07 2.49 6.05 -2.39 -0.01 2.48 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 1.68 7.57 -2.39 -0.02 1.66 16 35 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 36 H 0.09 4.68 5.82 -2.39 -0.01 4.67 16 37 H 0.02 1.27 7.54 -2.39 -0.02 1.26 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.06 3.36 6.58 -2.39 -0.02 3.34 16 40 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.13 3.78 7.95 -2.92 -0.02 3.76 16 42 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -60.46 334.86 6.49 -53.97 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.99 Total: 30.27 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 5.01 Total: -20.65 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.49 Total: -68.93 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.04 Total: -34.84 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -60.46 6.49 -53.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067991217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.716 kcal (2) G-P(sol) polarization free energy of solvation -60.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds